Wall clock time and date at job start Mon Mar 30 2020 01:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47005 * 2 1 4 4 C 1.47198 * 109.46685 * 120.00087 * 2 1 3 5 5 N 2.60800 * 109.46824 * 120.00200 * 2 1 3 6 6 N 1.46496 * 109.47052 * 239.99587 * 2 1 3 7 7 C 1.46497 * 120.00678 * 300.00310 * 6 2 1 8 8 C 1.34781 * 119.99864 * 119.99851 * 6 2 1 9 9 O 1.21289 * 119.99740 * 0.02562 * 8 6 2 10 10 C 1.50698 * 120.00369 * 180.27648 * 8 6 2 11 11 H 1.08997 * 109.47151 * 59.72470 * 10 8 6 12 12 C 1.50703 * 109.46737 * 299.72774 * 10 8 6 13 13 H 1.07996 * 120.00629 * 325.45724 * 12 10 8 14 14 C 1.37888 * 119.99701 * 145.45747 * 12 10 8 15 15 N 1.31520 * 119.99824 * 5.25620 * 14 12 10 16 16 Si 1.86794 * 120.00030 * 185.26216 * 14 12 10 17 17 H 1.48498 * 109.47360 * 89.99503 * 16 14 12 18 18 H 1.48496 * 109.47134 * 210.00056 * 16 14 12 19 19 H 1.48502 * 109.46956 * 329.99566 * 16 14 12 20 20 C 1.50691 * 109.47296 * 179.72985 * 10 8 6 21 21 C 1.38236 * 120.00377 * 66.11324 * 20 10 8 22 22 C 1.38230 * 120.00032 * 179.78940 * 21 20 10 23 23 C 1.38233 * 120.00423 * 0.44158 * 22 21 20 24 24 C 1.38241 * 119.99515 * 359.81067 * 23 22 21 25 25 C 1.38225 * 119.99928 * 359.97438 * 24 23 22 26 26 H 1.09003 * 109.46812 * 59.99899 * 1 2 3 27 27 H 1.08997 * 109.47005 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46943 * 299.99605 * 1 2 3 29 29 H 1.08998 * 109.47535 * 270.00129 * 7 6 2 30 30 H 1.09003 * 109.46801 * 29.99876 * 7 6 2 31 31 H 1.08999 * 109.47290 * 149.99287 * 7 6 2 32 32 H 0.97000 * 119.99377 * 179.97438 * 15 14 12 33 33 H 1.08000 * 119.99592 * 359.97438 * 21 20 10 34 34 H 1.08009 * 120.00003 * 180.27648 * 22 21 20 35 35 H 1.08002 * 120.00510 * 179.83901 * 23 22 21 36 36 H 1.07998 * 119.99716 * 180.02562 * 24 23 22 37 37 H 1.08003 * 120.00007 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6939 1.2019 5 7 2.3993 -1.2295 2.1294 6 7 2.0184 -0.6907 -1.1961 7 6 1.6645 -2.0932 -1.4280 8 6 2.7932 -0.0357 -2.0833 9 8 3.0866 1.1254 -1.8912 10 6 3.2905 -0.7442 -3.3169 11 1 2.4403 -1.0868 -3.9067 12 6 4.1304 -1.9281 -2.9119 13 1 4.7464 -1.8756 -2.0264 14 6 4.1126 -3.0784 -3.6720 15 7 3.4448 -3.1078 -4.8047 16 14 5.0367 -4.5950 -3.0930 17 1 4.1400 -5.4312 -2.2552 18 1 5.4879 -5.3792 -4.2704 19 1 6.2169 -4.1800 -2.2929 20 6 4.1232 0.2045 -4.1399 21 6 5.3267 0.6734 -3.6473 22 6 6.0926 1.5402 -4.4041 23 6 5.6508 1.9454 -5.6496 24 6 4.4447 1.4806 -6.1401 25 6 3.6810 0.6103 -5.3851 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.4157 -2.7378 -0.9717 30 1 0.6905 -2.3002 -0.9846 31 1 1.6238 -2.2852 -2.5002 32 1 3.4325 -3.9169 -5.3395 33 1 5.6699 0.3600 -2.6724 34 1 7.0351 1.9031 -4.0211 35 1 6.2479 2.6248 -6.2398 36 1 4.0997 1.7969 -7.1134 37 1 2.7386 0.2475 -5.7681 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001534405197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:48 Heat of formation + Delta-G solvation = 17.872400 kcal Electronic energy + Delta-G solvation = -20886.474505 eV Core-core repulsion = 17821.972788 eV Total energy + Delta-G solvation = -3064.501717 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.67018 -38.07744 -36.65564 -34.90004 -33.85020 -31.39162 -30.79445 -29.95363 -27.34413 -26.39986 -24.50669 -23.38571 -21.61937 -20.89624 -18.85237 -17.41574 -16.95569 -16.39262 -15.89189 -15.26895 -14.63047 -14.43449 -14.16024 -13.78216 -13.74623 -13.07697 -12.97015 -12.75788 -12.50302 -12.46257 -12.14304 -12.01436 -11.83465 -11.68571 -11.66274 -11.38266 -11.07908 -11.05966 -11.02484 -10.42811 -10.29030 -10.03187 -9.48780 -8.87090 -8.69264 -8.29039 -7.96150 -7.63883 -6.33376 -4.37907 2.34704 2.37445 2.68427 2.91818 3.15366 3.24537 3.27104 3.46910 3.80497 4.10794 4.24380 4.78242 5.03134 5.09087 5.17708 5.49854 5.68219 5.71091 5.77659 5.78391 5.88432 6.01922 6.12814 6.19736 6.27799 6.46915 6.55282 6.59594 6.81588 6.91778 7.04494 7.11971 7.35635 7.42510 7.57822 7.66360 7.70602 7.90028 7.91874 8.07654 8.62751 8.97846 9.26213 10.74520 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.008341 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.461293 B = 3356.243030 C = 4675.292527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.229 3.771 3 H 0.136 0.864 4 C 0.206 3.794 5 N -0.433 5.433 6 N -0.608 5.608 7 C 0.092 3.908 8 C 0.532 3.468 9 O -0.559 6.559 10 C 0.056 3.944 11 H 0.093 0.907 12 C -0.512 4.512 13 H 0.061 0.939 14 C 0.077 3.923 15 N -0.875 5.875 16 Si 0.892 3.108 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.272 1.272 20 C -0.011 4.011 21 C -0.085 4.085 22 C -0.134 4.134 23 C -0.148 4.148 24 C -0.132 4.132 25 C -0.116 4.116 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.268 0.732 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.322 4.504 1.554 7.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.121 3.879 3 H 0.154 0.846 4 C -0.114 4.114 5 N -0.110 5.110 6 N -0.342 5.342 7 C -0.051 4.051 8 C 0.324 3.676 9 O -0.437 6.437 10 C 0.035 3.965 11 H 0.110 0.890 12 C -0.549 4.549 13 H 0.080 0.920 14 C -0.128 4.128 15 N -0.511 5.511 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.013 4.013 21 C -0.103 4.103 22 C -0.152 4.152 23 C -0.166 4.166 24 C -0.150 4.150 25 C -0.134 4.134 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.639 4.178 2.858 6.866 hybrid contribution 0.548 -0.907 -0.131 1.067 sum -4.091 3.272 2.726 5.905 Atomic orbital electron populations 1.22099 0.92167 1.03502 1.03584 1.18370 0.94726 0.97062 0.77761 0.84612 1.29822 0.93175 0.93764 0.94650 1.81123 1.08707 1.08949 1.12248 1.47847 1.52404 1.13555 1.20418 1.21829 0.98489 0.80201 1.04556 1.21957 0.74678 0.85893 0.85032 1.90590 1.57770 1.17736 1.77604 1.18125 0.97269 0.92301 0.88823 0.88981 1.20625 1.27361 0.95753 1.11175 0.92048 1.24893 0.94866 0.98663 0.94384 1.69907 1.40765 1.28634 1.11766 0.86568 0.80452 0.82572 0.78515 1.20211 1.20961 1.19680 1.19992 0.94735 0.92387 0.94138 1.20820 0.94399 0.96049 0.99075 1.20949 0.99472 0.99557 0.95255 1.20801 0.97154 1.02029 0.96602 1.20897 0.95617 0.99261 0.99210 1.20962 0.99769 0.97595 0.95079 0.90078 0.91421 0.91017 0.92542 0.93144 0.88432 0.92256 0.87204 0.87639 0.87742 0.87563 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.13 37.16 0.34 -1.24 16 2 C 0.23 3.22 3.10 -70.72 -0.22 3.00 16 3 H 0.14 1.94 6.90 -51.93 -0.36 1.58 16 4 C 0.21 3.23 14.43 -20.76 -0.30 2.93 16 5 N -0.43 -7.68 18.54 42.15 0.78 -6.89 16 6 N -0.61 -10.43 2.74 -177.17 -0.49 -10.91 16 7 C 0.09 1.50 8.50 59.85 0.51 2.01 16 8 C 0.53 10.94 6.96 -10.98 -0.08 10.86 16 9 O -0.56 -12.43 14.75 5.55 0.08 -12.35 16 10 C 0.06 1.24 1.58 -94.08 -0.15 1.09 16 11 H 0.09 2.12 6.40 -51.93 -0.33 1.79 16 12 C -0.51 -12.12 5.53 -34.43 -0.19 -12.31 16 13 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 14 C 0.08 1.85 5.40 -17.81 -0.10 1.76 16 15 N -0.88 -21.72 12.85 55.43 0.71 -21.01 16 16 Si 0.89 19.46 29.54 -169.99 -5.02 14.44 16 17 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 C -0.01 -0.26 4.30 -104.63 -0.45 -0.71 16 21 C -0.09 -1.86 8.31 -39.58 -0.33 -2.19 16 22 C -0.13 -2.59 10.05 -39.59 -0.40 -2.99 16 23 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 24 C -0.13 -2.45 10.05 -39.59 -0.40 -2.85 16 25 C -0.12 -2.41 9.67 -39.59 -0.38 -2.80 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.66 6.66 -51.93 -0.35 0.31 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.01 7.89 -51.93 -0.41 0.60 16 30 H 0.05 0.66 6.43 -51.93 -0.33 0.32 16 31 H 0.10 1.77 6.09 -51.93 -0.32 1.45 16 32 H 0.27 6.42 8.31 -40.82 -0.34 6.09 16 33 H 0.11 2.45 7.89 -52.49 -0.41 2.04 16 34 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 35 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 36 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.11 2.23 7.96 -52.48 -0.42 1.81 16 LS Contribution 319.58 15.07 4.82 4.82 Total: -1.00 -27.86 319.58 -6.24 -34.10 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -4.59 Total: 4.31 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -2.54 Total: -6.50 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 1.01 Total: -38.81 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.08 Total: -12.35 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.86 -6.24 -34.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534405197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.971 kcal (2) G-P(sol) polarization free energy of solvation -27.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds