Wall clock time and date at job start Mon Mar 30 2020 01:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47005 * 2 1 4 4 C 1.47198 * 109.46685 * 120.00087 * 2 1 3 5 5 N 2.60800 * 109.46824 * 120.00200 * 2 1 3 6 6 N 1.46496 * 109.47052 * 239.99587 * 2 1 3 7 7 C 1.46497 * 120.00678 * 300.00310 * 6 2 1 8 8 C 1.34781 * 119.99864 * 119.99851 * 6 2 1 9 9 O 1.21289 * 119.99740 * 0.02562 * 8 6 2 10 10 C 1.50698 * 120.00369 * 180.27648 * 8 6 2 11 11 H 1.08997 * 109.47151 * 59.72470 * 10 8 6 12 12 C 1.50703 * 109.46737 * 299.72774 * 10 8 6 13 13 H 1.07996 * 120.00629 * 325.45724 * 12 10 8 14 14 C 1.37888 * 119.99701 * 145.45747 * 12 10 8 15 15 N 1.31520 * 119.99824 * 5.25620 * 14 12 10 16 16 Si 1.86794 * 120.00030 * 185.26216 * 14 12 10 17 17 H 1.48498 * 109.47360 * 89.99503 * 16 14 12 18 18 H 1.48496 * 109.47134 * 210.00056 * 16 14 12 19 19 H 1.48502 * 109.46956 * 329.99566 * 16 14 12 20 20 C 1.50691 * 109.47296 * 179.72985 * 10 8 6 21 21 C 1.38236 * 120.00377 * 66.11324 * 20 10 8 22 22 C 1.38230 * 120.00032 * 179.78940 * 21 20 10 23 23 C 1.38233 * 120.00423 * 0.44158 * 22 21 20 24 24 C 1.38241 * 119.99515 * 359.81067 * 23 22 21 25 25 C 1.38225 * 119.99928 * 359.97438 * 24 23 22 26 26 H 1.09003 * 109.46812 * 59.99899 * 1 2 3 27 27 H 1.08997 * 109.47005 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46943 * 299.99605 * 1 2 3 29 29 H 1.08998 * 109.47535 * 270.00129 * 7 6 2 30 30 H 1.09003 * 109.46801 * 29.99876 * 7 6 2 31 31 H 1.08999 * 109.47290 * 149.99287 * 7 6 2 32 32 H 0.97000 * 119.99377 * 179.97438 * 15 14 12 33 33 H 1.08000 * 119.99592 * 359.97438 * 21 20 10 34 34 H 1.08009 * 120.00003 * 180.27648 * 22 21 20 35 35 H 1.08002 * 120.00510 * 179.83901 * 23 22 21 36 36 H 1.07998 * 119.99716 * 180.02562 * 24 23 22 37 37 H 1.08003 * 120.00007 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6939 1.2019 5 7 2.3993 -1.2295 2.1294 6 7 2.0184 -0.6907 -1.1961 7 6 1.6645 -2.0932 -1.4280 8 6 2.7932 -0.0357 -2.0833 9 8 3.0866 1.1254 -1.8912 10 6 3.2905 -0.7442 -3.3169 11 1 2.4403 -1.0868 -3.9067 12 6 4.1304 -1.9281 -2.9119 13 1 4.7464 -1.8756 -2.0264 14 6 4.1126 -3.0784 -3.6720 15 7 3.4448 -3.1078 -4.8047 16 14 5.0367 -4.5950 -3.0930 17 1 4.1400 -5.4312 -2.2552 18 1 5.4879 -5.3792 -4.2704 19 1 6.2169 -4.1800 -2.2929 20 6 4.1232 0.2045 -4.1399 21 6 5.3267 0.6734 -3.6473 22 6 6.0926 1.5402 -4.4041 23 6 5.6508 1.9454 -5.6496 24 6 4.4447 1.4806 -6.1401 25 6 3.6810 0.6103 -5.3851 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.4157 -2.7378 -0.9717 30 1 0.6905 -2.3002 -0.9846 31 1 1.6238 -2.2852 -2.5002 32 1 3.4325 -3.9169 -5.3395 33 1 5.6699 0.3600 -2.6724 34 1 7.0351 1.9031 -4.0211 35 1 6.2479 2.6248 -6.2398 36 1 4.0997 1.7969 -7.1134 37 1 2.7386 0.2475 -5.7681 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001534405197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:48 Heat of formation + Delta-G solvation = 3.707663 kcal Electronic energy + Delta-G solvation = -20887.088734 eV Core-core repulsion = 17821.972788 eV Total energy + Delta-G solvation = -3065.115946 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20890 -39.56638 -38.06582 -36.34503 -35.57195 -33.00855 -32.10816 -31.49229 -28.96759 -27.75410 -26.04061 -24.80527 -23.17152 -22.40641 -20.40152 -18.76249 -18.63749 -18.02122 -17.37403 -16.82148 -16.14978 -16.04811 -15.65952 -15.29575 -15.06709 -14.62599 -14.24059 -14.08957 -14.06498 -13.92822 -13.61938 -13.48137 -13.29724 -13.00850 -12.89711 -12.84008 -12.77626 -12.68712 -12.20745 -12.13791 -11.90040 -11.61166 -11.25829 -10.65701 -10.41959 -9.73771 -9.51367 -9.22294 -8.19772 -6.27359 0.80157 0.82812 1.32852 1.39032 1.44426 1.50385 1.64662 1.86431 2.41275 2.46697 2.86809 3.09398 3.28962 3.99020 4.09952 4.26493 4.33835 4.37454 4.40396 4.49989 4.58979 4.80049 4.84568 4.91745 4.94197 5.01366 5.12549 5.20094 5.32364 5.39621 5.48697 5.66749 5.67812 5.83199 5.87226 5.97039 6.26244 6.34493 6.41396 6.49986 6.74466 7.35827 7.39378 8.87785 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.008341 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.461293 B = 3356.243030 C = 4675.292527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.228 3.772 3 H 0.136 0.864 4 C 0.223 3.777 5 N -0.467 5.467 6 N -0.604 5.604 7 C 0.095 3.905 8 C 0.531 3.469 9 O -0.580 6.580 10 C 0.059 3.941 11 H 0.078 0.922 12 C -0.508 4.508 13 H 0.041 0.959 14 C 0.049 3.951 15 N -0.895 5.895 16 Si 0.934 3.066 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.039 4.039 21 C -0.112 4.112 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.129 4.129 25 C -0.136 4.136 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.038 0.962 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.268 0.732 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.871 5.311 1.148 8.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.121 3.879 3 H 0.154 0.846 4 C -0.096 4.096 5 N -0.145 5.145 6 N -0.337 5.337 7 C -0.047 4.047 8 C 0.323 3.677 9 O -0.460 6.460 10 C 0.038 3.962 11 H 0.096 0.904 12 C -0.546 4.546 13 H 0.060 0.940 14 C -0.154 4.154 15 N -0.531 5.531 16 Si 0.761 3.239 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.208 1.208 20 C -0.040 4.040 21 C -0.131 4.131 22 C -0.155 4.155 23 C -0.161 4.161 24 C -0.147 4.147 25 C -0.154 4.154 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.149 0.851 35 H 0.162 0.838 36 H 0.158 0.842 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.212 4.969 2.474 7.614 hybrid contribution 0.743 -1.089 -0.012 1.319 sum -4.469 3.879 2.462 6.410 Atomic orbital electron populations 1.22111 0.88409 1.04657 1.05292 1.18748 0.97362 0.96148 0.75633 0.84650 1.30052 0.92154 0.92948 0.94434 1.81143 1.09836 1.10034 1.13459 1.47801 1.51338 1.13797 1.20746 1.21787 0.99995 0.79383 1.03534 1.21634 0.75077 0.85651 0.85354 1.90563 1.58774 1.18467 1.78192 1.17990 0.96537 0.92092 0.89571 0.90408 1.20557 1.27060 0.96653 1.10313 0.94025 1.25298 0.95468 1.00200 0.94463 1.69970 1.41771 1.29010 1.12366 0.85917 0.79329 0.80668 0.77999 1.19136 1.20961 1.20833 1.20125 0.95291 0.93480 0.95083 1.20829 0.95219 0.97955 0.99057 1.21288 1.00063 0.98510 0.95634 1.21253 0.97065 1.01651 0.96140 1.21307 0.95369 0.97838 1.00160 1.21134 1.00494 0.98758 0.95019 0.89333 0.90517 0.88357 0.94352 0.89099 0.90356 0.92260 0.89139 0.85106 0.83791 0.84223 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.13 71.98 0.66 -1.91 16 2 C 0.23 6.13 3.10 43.19 0.13 6.26 16 3 H 0.14 3.75 6.90 -2.39 -0.02 3.73 16 4 C 0.22 6.79 14.43 89.44 1.29 8.08 16 5 N -0.47 -16.27 18.54 20.01 0.37 -15.89 16 6 N -0.60 -20.59 2.74 -832.81 -2.28 -22.87 16 7 C 0.10 3.09 8.50 127.77 1.09 4.18 16 8 C 0.53 22.28 6.96 87.66 0.61 22.89 16 9 O -0.58 -26.24 14.75 -3.06 -0.05 -26.29 16 10 C 0.06 2.70 1.58 -13.03 -0.02 2.68 16 11 H 0.08 3.73 6.40 -2.39 -0.02 3.71 16 12 C -0.51 -24.84 5.53 25.60 0.14 -24.70 16 13 H 0.04 2.16 7.82 -2.91 -0.02 2.14 16 14 C 0.05 2.38 5.40 84.66 0.46 2.84 16 15 N -0.89 -45.06 12.85 21.45 0.28 -44.78 16 16 Si 0.93 40.31 29.54 68.60 2.03 42.33 16 17 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 C -0.04 -1.77 4.30 -19.87 -0.09 -1.86 16 21 C -0.11 -5.00 8.31 22.27 0.19 -4.81 16 22 C -0.14 -5.10 10.05 22.27 0.22 -4.88 16 23 C -0.14 -4.77 10.05 22.27 0.22 -4.54 16 24 C -0.13 -4.51 10.05 22.27 0.22 -4.29 16 25 C -0.14 -5.64 9.67 22.27 0.22 -5.43 16 26 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.08 1.24 6.66 -2.39 -0.02 1.22 16 28 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.04 1.38 7.89 -2.39 -0.02 1.36 16 30 H 0.09 2.18 6.43 -2.39 -0.02 2.17 16 31 H 0.08 2.88 6.09 -2.39 -0.01 2.87 16 32 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16 33 H 0.09 4.24 7.89 -2.91 -0.02 4.22 16 34 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 35 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 36 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 37 H 0.11 4.51 7.96 -2.91 -0.02 4.48 16 Total: -1.00 -61.07 319.58 6.76 -54.31 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 1.08 Total: 18.69 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.34 Total: -5.49 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -1.63 Total: -83.55 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.05 Total: -26.29 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.33 kcal Total: -61.07 6.76 -54.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534405197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.013 kcal (2) G-P(sol) polarization free energy of solvation -61.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds