Wall clock time and date at job start Mon Mar 30 2020 01:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47237 * 2 1 4 4 C 1.47197 * 109.46971 * 239.99699 * 2 1 3 5 5 N 2.60797 * 109.47050 * 239.99859 * 2 1 3 6 6 N 1.46504 * 109.46784 * 120.00088 * 2 1 3 7 7 C 1.46490 * 120.00187 * 59.72160 * 6 2 1 8 8 C 1.34783 * 119.99685 * 239.99687 * 6 2 1 9 9 O 1.21279 * 119.99700 * 174.33386 * 8 6 2 10 10 C 1.50703 * 119.99906 * 354.33537 * 8 6 2 11 11 H 1.08997 * 109.47457 * 326.14718 * 10 8 6 12 12 C 1.50701 * 109.47049 * 86.14638 * 10 8 6 13 13 H 1.08002 * 119.99787 * 32.87957 * 12 10 8 14 14 C 1.37873 * 120.00171 * 212.87047 * 12 10 8 15 15 N 1.31515 * 119.99771 * 354.39695 * 14 12 10 16 16 Si 1.86790 * 120.00189 * 174.39480 * 14 12 10 17 17 H 1.48499 * 109.47354 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47285 * 120.00484 * 16 14 12 19 19 H 1.48504 * 109.47280 * 240.00250 * 16 14 12 20 20 C 1.50700 * 109.46820 * 206.14707 * 10 8 6 21 21 C 1.38230 * 120.00024 * 292.80377 * 20 10 8 22 22 C 1.38240 * 120.00214 * 179.78828 * 21 20 10 23 23 C 1.38234 * 119.99393 * 0.44124 * 22 21 20 24 24 C 1.38237 * 120.00354 * 359.80881 * 23 22 21 25 25 C 1.38229 * 119.99641 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47577 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46968 * 300.00646 * 1 2 3 28 28 H 1.08995 * 109.46856 * 59.99520 * 1 2 3 29 29 H 1.09002 * 109.47841 * 265.38726 * 7 6 2 30 30 H 1.09004 * 109.47311 * 25.38841 * 7 6 2 31 31 H 1.09003 * 109.47538 * 145.38566 * 7 6 2 32 32 H 0.97002 * 120.00297 * 179.97438 * 15 14 12 33 33 H 1.08004 * 120.00229 * 359.97438 * 21 20 10 34 34 H 1.08001 * 120.00040 * 180.27279 * 22 21 20 35 35 H 1.08001 * 119.99501 * 179.83374 * 23 22 21 36 36 H 1.08004 * 120.00091 * 179.97438 * 24 23 22 37 37 H 1.08007 * 119.99913 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3993 -1.2295 -2.1294 6 7 2.0183 -0.6907 1.1962 7 6 1.6593 -2.0913 1.4311 8 6 2.7932 -0.0356 2.0834 9 8 3.1125 -0.5732 3.1226 10 6 3.2629 1.3647 1.7840 11 1 3.4312 1.4702 0.7123 12 6 2.2140 2.3518 2.2272 13 1 1.6025 2.1384 3.0915 14 6 2.0351 3.5275 1.5296 15 7 2.8506 3.8390 0.5460 16 14 0.6344 4.6778 1.9813 17 1 -0.1328 4.1022 3.1150 18 1 1.1864 5.9982 2.3775 19 1 -0.2636 4.8478 0.8109 20 6 4.5486 1.6320 2.5232 21 6 4.5502 1.7038 3.9036 22 6 5.7304 1.9447 4.5819 23 6 6.9074 2.1228 3.8792 24 6 6.9049 2.0562 2.4984 25 6 5.7255 1.8109 1.8205 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 0.7798 -2.1384 2.0732 30 1 1.4404 -2.5749 0.4791 31 1 2.4908 -2.6032 1.9158 32 1 2.7246 4.6660 0.0549 33 1 3.6299 1.5687 4.4525 34 1 5.7324 1.9963 5.6607 35 1 7.8290 2.3137 4.4090 36 1 7.8244 2.1959 1.9494 37 1 5.7236 1.7585 0.7417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001534405199.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:51 Heat of formation + Delta-G solvation = 17.800839 kcal Electronic energy + Delta-G solvation = -21026.493742 eV Core-core repulsion = 17961.988922 eV Total energy + Delta-G solvation = -3064.504820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.67492 -38.03782 -36.76370 -34.88772 -33.77081 -31.20002 -30.66102 -29.94799 -28.16423 -26.26778 -24.13522 -23.55008 -21.60895 -20.79070 -19.17967 -17.31070 -16.81170 -16.57323 -15.81690 -15.15399 -14.62128 -14.41770 -14.09872 -13.94445 -13.72199 -13.24798 -12.87119 -12.71822 -12.48487 -12.42538 -12.21317 -12.12955 -11.90328 -11.67361 -11.59472 -11.52192 -11.09911 -11.03922 -10.90379 -10.43799 -10.26270 -10.00139 -9.51204 -8.89429 -8.72358 -8.41683 -7.96051 -7.64637 -6.35813 -4.42498 2.33306 2.37658 2.70642 2.98034 3.13338 3.23962 3.26800 3.47256 3.76207 4.17854 4.23371 4.76652 5.01147 5.25899 5.30207 5.44692 5.70519 5.74171 5.78138 5.79579 5.88296 5.95241 6.07554 6.15725 6.21333 6.32576 6.47012 6.57214 6.73505 6.88551 6.96599 7.08789 7.35438 7.43129 7.57425 7.68666 7.69850 7.82513 7.91734 8.08272 8.62173 8.95322 9.23183 10.71908 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012597 B = 0.008993 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.210408 B = 3112.677035 C = 4249.837661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.227 3.773 3 H 0.163 0.837 4 C 0.206 3.794 5 N -0.438 5.438 6 N -0.614 5.614 7 C 0.086 3.914 8 C 0.534 3.466 9 O -0.546 6.546 10 C 0.051 3.949 11 H 0.082 0.918 12 C -0.512 4.512 13 H 0.067 0.933 14 C 0.074 3.926 15 N -0.876 5.876 16 Si 0.896 3.104 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.279 1.279 20 C -0.021 4.021 21 C -0.077 4.077 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.134 4.134 25 C -0.117 4.117 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.268 0.732 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 -3.985 0.623 4.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.119 3.881 3 H 0.180 0.820 4 C -0.113 4.113 5 N -0.115 5.115 6 N -0.349 5.349 7 C -0.057 4.057 8 C 0.326 3.674 9 O -0.423 6.423 10 C 0.030 3.970 11 H 0.100 0.900 12 C -0.550 4.550 13 H 0.085 0.915 14 C -0.131 4.131 15 N -0.511 5.511 16 Si 0.722 3.278 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.205 1.205 20 C -0.022 4.022 21 C -0.095 4.095 22 C -0.156 4.156 23 C -0.164 4.164 24 C -0.153 4.153 25 C -0.136 4.136 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.135 0.865 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.343 -4.944 -0.330 5.134 hybrid contribution -0.790 0.995 0.427 1.341 sum -2.133 -3.949 0.098 4.489 Atomic orbital electron populations 1.22064 0.91949 1.02671 1.04406 1.18853 0.95395 0.97643 0.76161 0.82009 1.29985 0.93014 0.93435 0.94895 1.81107 1.09074 1.09509 1.11783 1.47899 1.52911 1.12048 1.22090 1.21524 1.01175 0.82310 1.00658 1.21797 0.75073 0.88485 0.82052 1.90586 1.57213 1.69427 1.25033 1.18190 0.92064 0.87824 0.98963 0.90032 1.20690 1.17400 1.02541 1.14351 0.91455 1.24955 0.96061 0.97469 0.94607 1.69933 1.35593 1.24509 1.21086 0.86453 0.81828 0.80715 0.78769 1.19322 1.20775 1.20474 1.20040 0.94031 0.94531 0.93634 1.20912 0.97161 0.97045 0.94363 1.20995 0.93339 1.02392 0.98835 1.20822 0.97414 1.03857 0.94308 1.20892 0.97527 1.02511 0.94325 1.20992 0.92301 1.00939 0.99321 0.92286 0.89356 0.90853 0.92707 0.92280 0.91141 0.92184 0.86483 0.87530 0.87727 0.87579 0.87092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.15 37.16 0.34 -1.56 16 2 C 0.23 3.56 2.85 -70.71 -0.20 3.36 16 3 H 0.16 2.91 5.12 -51.93 -0.27 2.64 16 4 C 0.21 3.35 13.92 -20.76 -0.29 3.06 16 5 N -0.44 -7.76 18.54 42.15 0.78 -6.98 16 6 N -0.61 -10.57 2.74 -177.16 -0.49 -11.06 16 7 C 0.09 1.24 9.35 59.84 0.56 1.80 16 8 C 0.53 11.14 6.73 -10.98 -0.07 11.06 16 9 O -0.55 -12.58 14.89 5.56 0.08 -12.50 16 10 C 0.05 1.12 1.48 -94.07 -0.14 0.98 16 11 H 0.08 1.86 5.60 -51.93 -0.29 1.56 16 12 C -0.51 -11.88 7.05 -34.44 -0.24 -12.12 16 13 H 0.07 1.61 7.82 -52.49 -0.41 1.20 16 14 C 0.07 1.74 5.45 -17.82 -0.10 1.64 16 15 N -0.88 -21.38 12.88 55.43 0.71 -20.67 16 16 Si 0.90 18.58 29.54 -169.99 -5.02 13.56 16 17 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 20 C -0.02 -0.48 4.57 -104.63 -0.48 -0.96 16 21 C -0.08 -1.68 8.04 -39.58 -0.32 -1.99 16 22 C -0.14 -2.65 10.05 -39.58 -0.40 -3.05 16 23 C -0.15 -2.65 10.05 -39.58 -0.40 -3.05 16 24 C -0.13 -2.54 10.05 -39.59 -0.40 -2.94 16 25 C -0.12 -2.48 9.67 -39.59 -0.38 -2.86 16 26 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 27 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.74 7.29 -51.93 -0.38 0.36 16 31 H 0.07 1.08 7.66 -51.93 -0.40 0.68 16 32 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 33 H 0.12 2.61 7.65 -52.48 -0.40 2.21 16 34 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 37 H 0.11 2.27 7.96 -52.48 -0.42 1.85 16 LS Contribution 321.97 15.07 4.85 4.85 Total: -1.00 -27.37 321.97 -6.23 -33.60 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -4.63 Total: 5.82 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.52 Total: -6.62 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 1.01 Total: -38.71 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.50 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.37 -6.23 -33.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534405199.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.398 kcal (2) G-P(sol) polarization free energy of solvation -27.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds