Wall clock time and date at job start Mon Mar 30 2020 01:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47237 * 2 1 4 4 C 1.47197 * 109.46971 * 239.99699 * 2 1 3 5 5 N 2.60797 * 109.47050 * 239.99859 * 2 1 3 6 6 N 1.46504 * 109.46784 * 120.00088 * 2 1 3 7 7 C 1.46490 * 120.00187 * 59.72160 * 6 2 1 8 8 C 1.34783 * 119.99685 * 239.99687 * 6 2 1 9 9 O 1.21279 * 119.99700 * 174.33386 * 8 6 2 10 10 C 1.50703 * 119.99906 * 354.33537 * 8 6 2 11 11 H 1.08997 * 109.47457 * 326.14718 * 10 8 6 12 12 C 1.50701 * 109.47049 * 86.14638 * 10 8 6 13 13 H 1.08002 * 119.99787 * 32.87957 * 12 10 8 14 14 C 1.37873 * 120.00171 * 212.87047 * 12 10 8 15 15 N 1.31515 * 119.99771 * 354.39695 * 14 12 10 16 16 Si 1.86790 * 120.00189 * 174.39480 * 14 12 10 17 17 H 1.48499 * 109.47354 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47285 * 120.00484 * 16 14 12 19 19 H 1.48504 * 109.47280 * 240.00250 * 16 14 12 20 20 C 1.50700 * 109.46820 * 206.14707 * 10 8 6 21 21 C 1.38230 * 120.00024 * 292.80377 * 20 10 8 22 22 C 1.38240 * 120.00214 * 179.78828 * 21 20 10 23 23 C 1.38234 * 119.99393 * 0.44124 * 22 21 20 24 24 C 1.38237 * 120.00354 * 359.80881 * 23 22 21 25 25 C 1.38229 * 119.99641 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47577 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46968 * 300.00646 * 1 2 3 28 28 H 1.08995 * 109.46856 * 59.99520 * 1 2 3 29 29 H 1.09002 * 109.47841 * 265.38726 * 7 6 2 30 30 H 1.09004 * 109.47311 * 25.38841 * 7 6 2 31 31 H 1.09003 * 109.47538 * 145.38566 * 7 6 2 32 32 H 0.97002 * 120.00297 * 179.97438 * 15 14 12 33 33 H 1.08004 * 120.00229 * 359.97438 * 21 20 10 34 34 H 1.08001 * 120.00040 * 180.27279 * 22 21 20 35 35 H 1.08001 * 119.99501 * 179.83374 * 23 22 21 36 36 H 1.08004 * 120.00091 * 179.97438 * 24 23 22 37 37 H 1.08007 * 119.99913 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3993 -1.2295 -2.1294 6 7 2.0183 -0.6907 1.1962 7 6 1.6593 -2.0913 1.4311 8 6 2.7932 -0.0356 2.0834 9 8 3.1125 -0.5732 3.1226 10 6 3.2629 1.3647 1.7840 11 1 3.4312 1.4702 0.7123 12 6 2.2140 2.3518 2.2272 13 1 1.6025 2.1384 3.0915 14 6 2.0351 3.5275 1.5296 15 7 2.8506 3.8390 0.5460 16 14 0.6344 4.6778 1.9813 17 1 -0.1328 4.1022 3.1150 18 1 1.1864 5.9982 2.3775 19 1 -0.2636 4.8478 0.8109 20 6 4.5486 1.6320 2.5232 21 6 4.5502 1.7038 3.9036 22 6 5.7304 1.9447 4.5819 23 6 6.9074 2.1228 3.8792 24 6 6.9049 2.0562 2.4984 25 6 5.7255 1.8109 1.8205 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 0.7798 -2.1384 2.0732 30 1 1.4404 -2.5749 0.4791 31 1 2.4908 -2.6032 1.9158 32 1 2.7246 4.6660 0.0549 33 1 3.6299 1.5687 4.4525 34 1 5.7324 1.9963 5.6607 35 1 7.8290 2.3137 4.4090 36 1 7.8244 2.1959 1.9494 37 1 5.7236 1.7585 0.7417 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001534405199.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:51 Heat of formation + Delta-G solvation = 4.288811 kcal Electronic energy + Delta-G solvation = -21027.079667 eV Core-core repulsion = 17961.988922 eV Total energy + Delta-G solvation = -3065.090746 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.22470 -39.54486 -38.22752 -36.32807 -35.49173 -32.88259 -31.91563 -31.49983 -29.68720 -27.73911 -25.59199 -25.02814 -23.17435 -22.31685 -20.70819 -18.72060 -18.50276 -18.17282 -17.31020 -16.67484 -16.22387 -15.90987 -15.61726 -15.46517 -15.06196 -14.83671 -14.27434 -14.06394 -13.97353 -13.84551 -13.70879 -13.52191 -13.24902 -13.19468 -12.92074 -12.79604 -12.73579 -12.65631 -12.22012 -12.12278 -11.83418 -11.56054 -11.23754 -10.65166 -10.43601 -9.83524 -9.52916 -9.23614 -8.15861 -6.27034 0.77180 0.81401 1.33764 1.47238 1.53179 1.61788 1.64432 1.85048 2.37635 2.49347 2.86095 3.12678 3.27947 3.95580 4.07717 4.22932 4.29296 4.32462 4.44426 4.52832 4.58389 4.64755 4.84367 4.87212 4.92088 4.96576 5.01077 5.09122 5.31760 5.37906 5.48357 5.59135 5.72490 5.81111 5.86629 5.97418 6.21993 6.32685 6.39661 6.48717 6.78714 7.34538 7.40998 8.91675 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012597 B = 0.008993 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.210408 B = 3112.677035 C = 4249.837661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.229 3.771 3 H 0.140 0.860 4 C 0.223 3.777 5 N -0.460 5.460 6 N -0.610 5.610 7 C 0.084 3.916 8 C 0.532 3.468 9 O -0.574 6.574 10 C 0.054 3.946 11 H 0.068 0.932 12 C -0.511 4.511 13 H 0.054 0.946 14 C 0.043 3.957 15 N -0.900 5.900 16 Si 0.946 3.054 17 H -0.268 1.268 18 H -0.292 1.292 19 H -0.266 1.266 20 C -0.048 4.048 21 C -0.102 4.102 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.133 4.133 25 C -0.140 4.140 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.268 0.732 33 H 0.100 0.900 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.250 -4.089 0.865 4.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.122 3.878 3 H 0.157 0.843 4 C -0.096 4.096 5 N -0.137 5.137 6 N -0.344 5.344 7 C -0.057 4.057 8 C 0.324 3.676 9 O -0.453 6.453 10 C 0.033 3.967 11 H 0.086 0.914 12 C -0.549 4.549 13 H 0.072 0.928 14 C -0.160 4.160 15 N -0.537 5.537 16 Si 0.772 3.228 17 H -0.193 1.193 18 H -0.218 1.218 19 H -0.191 1.191 20 C -0.049 4.049 21 C -0.120 4.120 22 C -0.157 4.157 23 C -0.159 4.159 24 C -0.151 4.151 25 C -0.159 4.159 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.152 0.848 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.485 -5.069 -0.115 5.283 hybrid contribution -0.681 1.002 0.368 1.266 sum -2.165 -4.067 0.253 4.614 Atomic orbital electron populations 1.22079 0.88940 1.04445 1.05081 1.18912 0.97507 0.96112 0.75285 0.84296 1.29958 0.92263 0.92807 0.94564 1.81127 1.09792 1.10313 1.12466 1.47865 1.51746 1.13119 1.21673 1.21702 1.01421 0.80383 1.02227 1.21560 0.75490 0.88310 0.82261 1.90557 1.58545 1.69933 1.26294 1.18076 0.92097 0.88553 0.98008 0.91389 1.20675 1.17416 1.03048 1.13750 0.92801 1.25455 0.97603 0.98373 0.94519 1.70017 1.36824 1.24864 1.21954 0.85679 0.79842 0.78463 0.78846 1.19253 1.21842 1.19125 1.20206 0.94673 0.95801 0.94267 1.20926 0.97802 0.98974 0.94299 1.21351 0.92801 1.01111 1.00396 1.21267 0.98469 1.02061 0.94140 1.21282 0.97750 1.00980 0.95112 1.21135 0.93118 1.02242 0.99358 0.89980 0.89745 0.89116 0.90919 0.89980 0.92218 0.92237 0.88166 0.84780 0.83758 0.84515 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.15 71.98 0.66 -2.73 16 2 C 0.23 7.07 2.85 43.19 0.12 7.19 16 3 H 0.14 5.09 5.12 -2.39 -0.01 5.08 16 4 C 0.22 7.07 13.92 89.44 1.25 8.32 16 5 N -0.46 -15.92 18.54 20.00 0.37 -15.55 16 6 N -0.61 -20.87 2.74 -832.81 -2.28 -23.15 16 7 C 0.08 2.32 9.35 127.77 1.19 3.52 16 8 C 0.53 22.71 6.73 87.66 0.59 23.30 16 9 O -0.57 -27.12 14.89 -3.03 -0.05 -27.17 16 10 C 0.05 2.46 1.48 -13.03 -0.02 2.44 16 11 H 0.07 3.23 5.60 -2.39 -0.01 3.22 16 12 C -0.51 -24.30 7.05 25.60 0.18 -24.12 16 13 H 0.05 2.66 7.82 -2.91 -0.02 2.63 16 14 C 0.04 2.04 5.45 84.65 0.46 2.50 16 15 N -0.90 -44.65 12.88 21.45 0.28 -44.38 16 16 Si 0.95 38.11 29.54 68.60 2.03 40.14 16 17 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 20 C -0.05 -2.24 4.57 -19.87 -0.09 -2.33 16 21 C -0.10 -4.52 8.04 22.27 0.18 -4.34 16 22 C -0.14 -5.16 10.05 22.27 0.22 -4.94 16 23 C -0.14 -4.77 10.05 22.27 0.22 -4.55 16 24 C -0.13 -4.81 10.05 22.27 0.22 -4.59 16 25 C -0.14 -6.00 9.67 22.27 0.22 -5.78 16 26 H 0.08 1.53 7.66 -2.39 -0.02 1.51 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 1.87 7.29 -2.38 -0.02 1.85 16 31 H 0.06 1.79 7.66 -2.39 -0.02 1.77 16 32 H 0.27 12.75 8.31 -92.71 -0.77 11.98 16 33 H 0.10 4.66 7.65 -2.91 -0.02 4.64 16 34 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 35 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 36 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 37 H 0.11 4.49 7.96 -2.91 -0.02 4.46 16 Total: -1.00 -59.44 321.97 6.83 -52.61 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 1.07 Total: 23.61 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 5.41 Total: -6.10 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -1.63 Total: -83.08 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.05 Total: -27.17 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -59.44 6.83 -52.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534405199.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.896 kcal (2) G-P(sol) polarization free energy of solvation -59.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds