Wall clock time and date at job start Mon Mar 30 2020 01:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47036 * 2 1 4 4 C 1.46499 * 120.00189 * 270.82751 * 3 2 1 5 5 C 1.47205 * 109.47283 * 270.00676 * 4 3 2 6 6 N 4.13043 * 140.07759 * 309.10049 * 2 1 3 7 7 C 1.34774 * 120.00198 * 90.83461 * 3 2 1 8 8 O 1.21290 * 119.99841 * 5.09017 * 7 3 2 9 9 C 1.50696 * 120.00235 * 185.09385 * 7 3 2 10 10 H 1.09001 * 109.47148 * 34.10864 * 9 7 3 11 11 C 1.50696 * 109.47168 * 274.10765 * 9 7 3 12 12 H 1.08003 * 120.00169 * 335.06577 * 11 9 7 13 13 C 1.37878 * 119.99889 * 154.78964 * 11 9 7 14 14 N 1.31521 * 120.00082 * 184.47327 * 13 11 9 15 15 Si 1.86794 * 120.00276 * 4.48240 * 13 11 9 16 16 H 1.48497 * 109.47545 * 85.15318 * 15 13 11 17 17 H 1.48504 * 109.47276 * 205.15645 * 15 13 11 18 18 H 1.48507 * 109.46815 * 325.15196 * 15 13 11 19 19 C 1.50699 * 109.47159 * 154.10719 * 9 7 3 20 20 C 1.38237 * 119.99917 * 66.62775 * 19 9 7 21 21 C 1.38235 * 119.99887 * 179.80858 * 20 19 9 22 22 C 1.38237 * 120.00242 * 0.39780 * 21 20 19 23 23 C 1.38237 * 119.99659 * 359.85349 * 22 21 20 24 24 C 1.38235 * 120.00092 * 246.89846 * 19 9 7 25 25 H 1.08999 * 109.47495 * 184.82844 * 1 2 3 26 26 H 1.09000 * 109.47595 * 304.83330 * 1 2 3 27 27 H 1.09000 * 109.47246 * 64.83269 * 1 2 3 28 28 H 1.09005 * 109.47054 * 239.99781 * 2 1 3 29 29 H 1.09000 * 109.46666 * 120.00155 * 2 1 3 30 30 H 1.09000 * 109.46869 * 30.00011 * 4 3 2 31 31 H 1.08997 * 109.47209 * 150.00193 * 4 3 2 32 32 H 0.96997 * 119.99812 * 180.02562 * 14 13 11 33 33 H 1.08000 * 120.00076 * 359.97438 * 20 19 9 34 34 H 1.07999 * 120.00467 * 180.22780 * 21 20 19 35 35 H 1.08000 * 120.00270 * 179.83339 * 22 21 20 36 36 H 1.08000 * 119.99701 * 179.97438 * 23 22 21 37 37 H 1.07996 * 120.00015 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2452 2.0779 -1.2686 5 6 3.6295 1.8486 -1.7136 6 7 4.6977 1.6717 -2.0571 7 6 2.2589 2.0109 1.1670 8 8 2.1602 1.4063 2.2139 9 6 2.6505 3.4661 1.1713 10 1 2.1416 3.9817 0.3569 11 6 4.1415 3.5856 0.9877 12 1 4.7880 2.7691 1.2737 13 6 4.6798 4.7350 0.4492 14 7 5.9706 4.8060 0.2072 15 14 3.5759 6.1917 0.0636 16 1 3.4030 7.0188 1.2847 17 1 4.1961 7.0131 -1.0069 18 1 2.2509 5.7013 -0.3938 19 6 2.2547 4.0889 2.4852 20 6 2.8782 3.6926 3.6536 21 6 2.5178 4.2668 4.8584 22 6 1.5284 5.2314 4.8958 23 6 0.9013 5.6240 3.7281 24 6 1.2643 5.0526 2.5228 25 1 -0.3634 -1.0240 0.0865 26 1 -0.3634 0.5870 0.8435 27 1 -0.3634 0.4370 -0.9301 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.5541 1.6974 -2.0207 31 1 2.0800 3.1465 -1.1308 32 1 6.3493 5.6148 -0.1713 33 1 3.6486 2.9363 3.6249 34 1 3.0074 3.9599 5.7708 35 1 1.2450 5.6781 5.8374 36 1 0.1280 6.3773 3.7574 37 1 0.7745 5.3593 1.6105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535253084.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:05 Heat of formation + Delta-G solvation = 23.711401 kcal Electronic energy + Delta-G solvation = -21152.515127 eV Core-core repulsion = 18088.266608 eV Total energy + Delta-G solvation = -3064.248519 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.79019 -38.18762 -36.22633 -34.88588 -33.75289 -31.71328 -30.90332 -30.15447 -27.86016 -27.22302 -24.12584 -22.68662 -21.86823 -20.73876 -19.19030 -17.38284 -16.97239 -16.57091 -16.15502 -15.77484 -14.73133 -14.45146 -14.14597 -13.70642 -13.63297 -13.44983 -13.17380 -12.74318 -12.58918 -12.45151 -12.35182 -12.19525 -11.95622 -11.83375 -11.62064 -11.23010 -11.02154 -10.98168 -10.85323 -10.51073 -10.23704 -9.96558 -9.60893 -8.98438 -8.74525 -8.53748 -8.15517 -7.85352 -6.27635 -4.32898 2.09519 2.18211 2.90442 3.09078 3.21818 3.27042 3.38157 3.46526 3.90229 4.21097 4.56074 4.57886 5.01449 5.08559 5.25171 5.41867 5.48931 5.50209 5.55660 5.57409 5.67834 5.74377 5.85109 5.95461 6.14164 6.22499 6.27836 6.30844 6.41574 6.69158 6.83025 6.87082 7.13089 7.24843 7.25567 7.56689 7.70169 7.82330 8.21779 8.23721 8.71698 8.84939 9.27736 10.82942 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013858 B = 0.009869 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.980399 B = 2836.401880 C = 4075.825365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.108 3.892 3 N -0.616 5.616 4 C 0.214 3.786 5 C 0.189 3.811 6 N -0.409 5.409 7 C 0.545 3.455 8 O -0.540 6.540 9 C 0.023 3.977 10 H 0.065 0.935 11 C -0.508 4.508 12 H 0.080 0.920 13 C 0.090 3.910 14 N -0.874 5.874 15 Si 0.859 3.141 16 H -0.265 1.265 17 H -0.286 1.286 18 H -0.261 1.261 19 C -0.042 4.042 20 C -0.063 4.063 21 C -0.132 4.132 22 C -0.140 4.140 23 C -0.132 4.132 24 C -0.138 4.138 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.268 0.732 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.029 -2.629 -0.804 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.014 4.014 3 N -0.351 5.351 4 C 0.087 3.913 5 C -0.131 4.131 6 N -0.086 5.086 7 C 0.336 3.664 8 O -0.415 6.415 9 C 0.002 3.998 10 H 0.083 0.917 11 C -0.546 4.546 12 H 0.098 0.902 13 C -0.116 4.116 14 N -0.508 5.508 15 Si 0.686 3.314 16 H -0.189 1.189 17 H -0.212 1.212 18 H -0.186 1.186 19 C -0.043 4.043 20 C -0.081 4.081 21 C -0.150 4.150 22 C -0.158 4.158 23 C -0.150 4.150 24 C -0.157 4.157 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.140 0.860 32 H 0.079 0.921 33 H 0.141 0.859 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.317 -3.108 -0.805 11.763 hybrid contribution -0.695 1.123 -0.089 1.323 sum -12.012 -1.986 -0.894 12.208 Atomic orbital electron populations 1.22134 0.96047 1.01911 1.02246 1.21393 0.94024 0.82858 1.03170 1.47896 1.67579 1.14211 1.05381 1.18820 0.85224 1.00744 0.86473 1.29418 0.95522 0.94096 0.94043 1.81094 1.10988 1.07943 1.08616 1.21168 0.72943 0.90236 0.82039 1.90596 1.51462 1.68309 1.31180 1.18601 0.99798 0.88573 0.92837 0.91707 1.20350 0.86766 1.03837 1.43617 0.90227 1.24893 0.94844 0.97759 0.94096 1.69864 1.11271 1.28099 1.41598 0.87142 0.81107 0.83958 0.79224 1.18942 1.21238 1.18570 1.20178 0.92817 0.95313 0.96041 1.20954 0.98022 0.97864 0.91257 1.21086 0.98291 0.97802 0.97864 1.20894 0.98272 0.99192 0.97474 1.20878 1.00597 1.00556 0.92946 1.21010 0.98339 0.98890 0.97418 0.91967 0.92123 0.92603 0.91033 0.89733 0.86962 0.86001 0.92141 0.85906 0.87069 0.87322 0.87250 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 10.24 37.16 0.38 -1.38 16 2 C 0.11 1.42 6.18 -4.05 -0.02 1.39 16 3 N -0.62 -9.92 2.43 -177.03 -0.43 -10.35 16 4 C 0.21 3.00 5.69 -6.83 -0.04 2.96 16 5 C 0.19 3.46 14.99 -20.76 -0.31 3.15 16 6 N -0.41 -8.84 18.54 42.15 0.78 -8.06 16 7 C 0.55 11.01 6.73 -10.99 -0.07 10.94 16 8 O -0.54 -12.12 14.66 5.55 0.08 -12.04 16 9 C 0.02 0.50 1.16 -94.08 -0.11 0.39 16 10 H 0.07 1.29 3.46 -51.93 -0.18 1.11 16 11 C -0.51 -12.96 7.33 -34.44 -0.25 -13.21 16 12 H 0.08 2.35 8.05 -52.48 -0.42 1.93 16 13 C 0.09 2.38 5.47 -17.82 -0.10 2.28 16 14 N -0.87 -25.24 13.96 55.43 0.77 -24.46 16 15 Si 0.86 19.59 26.01 -169.99 -4.42 15.17 16 16 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.26 -5.19 6.13 56.52 0.35 -4.84 16 19 C -0.04 -0.91 3.86 -104.62 -0.40 -1.31 16 20 C -0.06 -1.35 8.03 -39.58 -0.32 -1.67 16 21 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16 22 C -0.14 -2.38 10.05 -39.58 -0.40 -2.78 16 23 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 24 C -0.14 -2.65 8.61 -39.58 -0.34 -2.99 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 29 H 0.08 1.27 7.33 -51.93 -0.38 0.89 16 30 H 0.11 0.98 8.07 -51.93 -0.42 0.56 16 31 H 0.12 1.72 5.80 -51.93 -0.30 1.42 16 32 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.12 2.82 7.63 -52.49 -0.40 2.42 16 34 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.11 1.89 7.96 -52.49 -0.42 1.47 16 LS Contribution 317.66 15.07 4.79 4.79 Total: -1.00 -32.37 317.66 -5.88 -38.25 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.67 Total: 4.46 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -2.78 Total: -7.76 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 1.12 Total: -42.86 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.08 Total: -12.04 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.42 Total: 15.17 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.37 -5.88 -38.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535253084.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.961 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds