Wall clock time and date at job start Mon Mar 30 2020 01:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47036 * 2 1 4 4 C 1.46499 * 120.00189 * 270.82751 * 3 2 1 5 5 C 1.47205 * 109.47283 * 270.00676 * 4 3 2 6 6 N 4.13043 * 140.07759 * 309.10049 * 2 1 3 7 7 C 1.34774 * 120.00198 * 90.83461 * 3 2 1 8 8 O 1.21290 * 119.99841 * 5.09017 * 7 3 2 9 9 C 1.50696 * 120.00235 * 185.09385 * 7 3 2 10 10 H 1.09001 * 109.47148 * 34.10864 * 9 7 3 11 11 C 1.50696 * 109.47168 * 274.10765 * 9 7 3 12 12 H 1.08003 * 120.00169 * 335.06577 * 11 9 7 13 13 C 1.37878 * 119.99889 * 154.78964 * 11 9 7 14 14 N 1.31521 * 120.00082 * 184.47327 * 13 11 9 15 15 Si 1.86794 * 120.00276 * 4.48240 * 13 11 9 16 16 H 1.48497 * 109.47545 * 85.15318 * 15 13 11 17 17 H 1.48504 * 109.47276 * 205.15645 * 15 13 11 18 18 H 1.48507 * 109.46815 * 325.15196 * 15 13 11 19 19 C 1.50699 * 109.47159 * 154.10719 * 9 7 3 20 20 C 1.38237 * 119.99917 * 66.62775 * 19 9 7 21 21 C 1.38235 * 119.99887 * 179.80858 * 20 19 9 22 22 C 1.38237 * 120.00242 * 0.39780 * 21 20 19 23 23 C 1.38237 * 119.99659 * 359.85349 * 22 21 20 24 24 C 1.38235 * 120.00092 * 246.89846 * 19 9 7 25 25 H 1.08999 * 109.47495 * 184.82844 * 1 2 3 26 26 H 1.09000 * 109.47595 * 304.83330 * 1 2 3 27 27 H 1.09000 * 109.47246 * 64.83269 * 1 2 3 28 28 H 1.09005 * 109.47054 * 239.99781 * 2 1 3 29 29 H 1.09000 * 109.46666 * 120.00155 * 2 1 3 30 30 H 1.09000 * 109.46869 * 30.00011 * 4 3 2 31 31 H 1.08997 * 109.47209 * 150.00193 * 4 3 2 32 32 H 0.96997 * 119.99812 * 180.02562 * 14 13 11 33 33 H 1.08000 * 120.00076 * 359.97438 * 20 19 9 34 34 H 1.07999 * 120.00467 * 180.22780 * 21 20 19 35 35 H 1.08000 * 120.00270 * 179.83339 * 22 21 20 36 36 H 1.08000 * 119.99701 * 179.97438 * 23 22 21 37 37 H 1.07996 * 120.00015 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2452 2.0779 -1.2686 5 6 3.6295 1.8486 -1.7136 6 7 4.6977 1.6717 -2.0571 7 6 2.2589 2.0109 1.1670 8 8 2.1602 1.4063 2.2139 9 6 2.6505 3.4661 1.1713 10 1 2.1416 3.9817 0.3569 11 6 4.1415 3.5856 0.9877 12 1 4.7880 2.7691 1.2737 13 6 4.6798 4.7350 0.4492 14 7 5.9706 4.8060 0.2072 15 14 3.5759 6.1917 0.0636 16 1 3.4030 7.0188 1.2847 17 1 4.1961 7.0131 -1.0069 18 1 2.2509 5.7013 -0.3938 19 6 2.2547 4.0889 2.4852 20 6 2.8782 3.6926 3.6536 21 6 2.5178 4.2668 4.8584 22 6 1.5284 5.2314 4.8958 23 6 0.9013 5.6240 3.7281 24 6 1.2643 5.0526 2.5228 25 1 -0.3634 -1.0240 0.0865 26 1 -0.3634 0.5870 0.8435 27 1 -0.3634 0.4370 -0.9301 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.5541 1.6974 -2.0207 31 1 2.0800 3.1465 -1.1308 32 1 6.3493 5.6148 -0.1713 33 1 3.6486 2.9363 3.6249 34 1 3.0074 3.9599 5.7708 35 1 1.2450 5.6781 5.8374 36 1 0.1280 6.3773 3.7574 37 1 0.7745 5.3593 1.6105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535253084.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:04 Heat of formation + Delta-G solvation = 3.064755 kcal Electronic energy + Delta-G solvation = -21153.410432 eV Core-core repulsion = 18088.266608 eV Total energy + Delta-G solvation = -3065.143825 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.28735 -39.60462 -37.74198 -36.32598 -35.54692 -33.46629 -32.05660 -31.59616 -29.45119 -28.52841 -25.80302 -24.00582 -23.32714 -22.13075 -20.67150 -19.19221 -18.47294 -18.05101 -17.53305 -17.13497 -16.48296 -15.86900 -15.60064 -15.19822 -14.93978 -14.87829 -14.61367 -14.39304 -14.07663 -13.83432 -13.81121 -13.59660 -13.42054 -13.16484 -12.96458 -12.69094 -12.66883 -12.41689 -12.04130 -11.94920 -11.80107 -11.57352 -11.43879 -10.85106 -10.50407 -9.88032 -9.60889 -9.35347 -8.31652 -6.41380 0.64736 0.72236 1.29451 1.42254 1.45971 1.49437 1.84416 2.03427 2.31644 2.51767 3.01193 3.15341 3.27683 3.89046 4.09794 4.21998 4.26992 4.30485 4.38472 4.40161 4.44537 4.52017 4.66916 4.71209 4.84175 4.93846 4.96214 5.15922 5.22511 5.35258 5.41216 5.44562 5.66373 5.71911 5.77624 5.97111 6.15945 6.29479 6.40108 6.62422 6.79333 7.22720 7.30617 8.83106 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013858 B = 0.009869 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.980399 B = 2836.401880 C = 4075.825365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.610 5.610 4 C 0.207 3.793 5 C 0.211 3.789 6 N -0.479 5.479 7 C 0.539 3.461 8 O -0.572 6.572 9 C 0.026 3.974 10 H 0.089 0.911 11 C -0.490 4.490 12 H 0.015 0.985 13 C 0.035 3.965 14 N -0.934 5.934 15 Si 0.913 3.087 16 H -0.269 1.269 17 H -0.293 1.293 18 H -0.203 1.203 19 C -0.068 4.068 20 C -0.098 4.098 21 C -0.140 4.140 22 C -0.135 4.135 23 C -0.126 4.126 24 C -0.146 4.146 25 H 0.080 0.920 26 H 0.037 0.963 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.183 0.817 31 H 0.130 0.870 32 H 0.266 0.734 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.646 -1.072 -1.493 17.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.019 4.019 3 N -0.343 5.343 4 C 0.081 3.919 5 C -0.108 4.108 6 N -0.158 5.158 7 C 0.329 3.671 8 O -0.451 6.451 9 C 0.005 3.995 10 H 0.107 0.893 11 C -0.528 4.528 12 H 0.034 0.966 13 C -0.165 4.165 14 N -0.571 5.571 15 Si 0.735 3.265 16 H -0.194 1.194 17 H -0.219 1.219 18 H -0.125 1.125 19 C -0.069 4.069 20 C -0.116 4.116 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.144 4.144 24 C -0.164 4.164 25 H 0.099 0.901 26 H 0.056 0.944 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.200 0.800 31 H 0.148 0.852 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.145 0.855 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.977 -1.592 -1.517 16.128 hybrid contribution 0.760 0.529 0.253 0.960 sum -15.217 -1.064 -1.264 15.307 Atomic orbital electron populations 1.22056 0.93356 1.03050 1.02791 1.21653 0.96136 0.80954 1.03168 1.47931 1.66144 1.15310 1.04916 1.19529 0.83873 1.01579 0.86924 1.30354 0.96106 0.92119 0.92262 1.81116 1.13262 1.10315 1.11096 1.21043 0.73074 0.90040 0.82934 1.90575 1.52959 1.68768 1.32791 1.18519 0.96731 0.90102 0.94153 0.89326 1.20191 0.88688 1.01666 1.42231 0.96636 1.25732 0.96017 1.00790 0.93965 1.70052 1.13973 1.28975 1.44122 0.86264 0.81800 0.79735 0.78670 1.19393 1.21914 1.12498 1.20178 0.94635 0.96767 0.95334 1.20855 0.98648 0.98689 0.93403 1.21344 0.99014 0.98164 0.97318 1.21355 0.96689 0.97765 0.99433 1.21400 1.00647 1.00352 0.92001 1.21337 0.97638 0.97927 0.99540 0.90091 0.94393 0.89611 0.88211 0.92654 0.79991 0.85233 0.92528 0.89864 0.85465 0.83460 0.83071 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 10.24 71.98 0.74 -2.02 16 2 C 0.10 2.49 6.18 86.38 0.53 3.02 16 3 N -0.61 -18.68 2.43 -832.38 -2.02 -20.71 16 4 C 0.21 5.10 5.69 84.58 0.48 5.58 16 5 C 0.21 7.58 14.99 89.44 1.34 8.93 16 6 N -0.48 -21.33 18.54 20.01 0.37 -20.96 16 7 C 0.54 21.93 6.73 87.66 0.59 22.52 16 8 O -0.57 -26.80 14.66 -3.06 -0.04 -26.84 16 9 C 0.03 1.12 1.16 -13.04 -0.02 1.10 16 10 H 0.09 3.26 3.46 -2.39 -0.01 3.25 16 11 C -0.49 -26.14 7.33 25.60 0.19 -25.96 16 12 H 0.02 0.99 8.05 -2.91 -0.02 0.97 16 13 C 0.03 1.90 5.47 84.65 0.46 2.36 16 14 N -0.93 -56.92 13.96 21.45 0.30 -56.62 16 15 Si 0.91 39.18 26.01 68.60 1.78 40.96 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 17 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.20 -6.76 6.13 99.48 0.61 -6.15 16 19 C -0.07 -2.87 3.86 -19.87 -0.08 -2.95 16 20 C -0.10 -4.34 8.03 22.27 0.18 -4.16 16 21 C -0.14 -5.13 10.05 22.27 0.22 -4.90 16 22 C -0.13 -4.09 10.05 22.27 0.22 -3.87 16 23 C -0.13 -3.76 10.05 22.27 0.22 -3.54 16 24 C -0.15 -5.08 8.61 22.27 0.19 -4.88 16 25 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.10 1.88 8.08 -2.38 -0.02 1.86 16 29 H 0.05 1.68 7.33 -2.39 -0.02 1.66 16 30 H 0.18 2.04 8.07 -2.39 -0.02 2.02 16 31 H 0.13 3.10 5.80 -2.39 -0.01 3.09 16 32 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.08 4.23 7.63 -2.91 -0.02 4.21 16 34 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 35 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 36 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.14 3.90 7.96 -2.91 -0.02 3.88 16 Total: -1.00 -79.79 317.66 6.65 -73.14 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.98 Total: 19.79 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 5.28 Total: -8.76 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -1.35 Total: -98.28 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.04 Total: -26.84 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 1.78 Total: 40.96 kcal Total: -79.79 6.65 -73.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535253084.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.206 kcal (2) G-P(sol) polarization free energy of solvation -79.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds