Wall clock time and date at job start Mon Mar 30 2020 01:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 119.99877 * 2 1 4 4 C 1.53001 * 109.47033 * 90.00165 * 3 2 1 5 5 C 1.47202 * 109.47257 * 179.97438 * 4 3 2 6 6 N 4.80471 * 118.48432 * 19.97315 * 2 1 3 7 7 C 1.34771 * 120.00259 * 180.27727 * 2 1 3 8 8 O 1.21289 * 120.00305 * 185.32927 * 7 2 1 9 9 C 1.50697 * 119.99899 * 5.32681 * 7 2 1 10 10 H 1.08999 * 109.47220 * 49.19306 * 9 7 2 11 11 C 1.50696 * 109.47452 * 289.18892 * 9 7 2 12 12 H 1.08005 * 119.99925 * 326.25046 * 11 9 7 13 13 C 1.37882 * 120.00306 * 146.24414 * 11 9 7 14 14 N 1.31513 * 119.99677 * 5.29804 * 13 11 9 15 15 Si 1.86799 * 120.00183 * 185.29212 * 13 11 9 16 16 H 1.48502 * 109.47150 * 90.00403 * 15 13 11 17 17 H 1.48503 * 109.47025 * 210.00074 * 15 13 11 18 18 H 1.48495 * 109.47157 * 330.00512 * 15 13 11 19 19 C 1.50703 * 109.47433 * 169.18963 * 9 7 2 20 20 C 1.38232 * 119.99869 * 66.74871 * 19 9 7 21 21 C 1.38239 * 120.00044 * 179.79288 * 20 19 9 22 22 C 1.38231 * 119.99671 * 0.43865 * 21 20 19 23 23 C 1.38228 * 120.00418 * 359.81679 * 22 21 20 24 24 C 1.38236 * 120.00288 * 247.02935 * 19 9 7 25 25 H 1.08996 * 109.47188 * 86.83091 * 1 2 3 26 26 H 1.08999 * 109.46690 * 206.83151 * 1 2 3 27 27 H 1.08997 * 109.46917 * 326.82787 * 1 2 3 28 28 H 1.08996 * 109.47075 * 209.99801 * 3 2 1 29 29 H 1.09000 * 109.47139 * 330.00204 * 3 2 1 30 30 H 1.08999 * 109.47353 * 299.99954 * 4 3 2 31 31 H 1.09000 * 109.47126 * 60.00031 * 4 3 2 32 32 H 0.96998 * 119.99999 * 179.97438 * 14 13 11 33 33 H 1.08008 * 120.00214 * 0.02562 * 20 19 9 34 34 H 1.07999 * 120.00087 * 180.28329 * 21 20 19 35 35 H 1.08001 * 119.99979 * 179.83625 * 22 21 20 36 36 H 1.08003 * 120.00596 * 179.97438 * 23 22 21 37 37 H 1.08005 * 119.99701 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4425 5 6 3.1890 2.9849 1.4426 6 7 3.7565 3.9691 1.4425 7 6 2.1389 -1.1671 -0.0056 8 8 3.3479 -1.1699 0.0919 9 6 1.3904 -2.4688 -0.1331 10 1 0.6920 -2.4061 -0.9677 11 6 0.6294 -2.7374 1.1396 12 1 1.0380 -2.4249 2.0892 13 6 -0.5886 -3.3820 1.0916 14 7 -1.0378 -3.8548 -0.0504 15 14 -1.6004 -3.5839 2.6488 16 1 -2.5047 -2.4165 2.8063 17 1 -2.4080 -4.8267 2.5567 18 1 -0.6930 -3.6688 3.8212 19 6 2.3682 -3.5887 -0.3795 20 6 3.2656 -3.9523 0.6072 21 6 4.1597 -4.9824 0.3828 22 6 4.1626 -5.6428 -0.8316 23 6 3.2688 -5.2758 -1.8201 24 6 2.3718 -4.2485 -1.5942 25 1 -0.3633 0.0568 -1.0260 26 1 -0.3633 -0.9170 0.4639 27 1 -0.3633 0.8602 0.5623 28 1 3.1499 1.1384 -0.5138 29 1 1.6084 2.0284 -0.5138 30 1 1.5001 1.8407 1.9564 31 1 3.0416 0.9508 1.9563 32 1 -1.8944 -4.3086 -0.0841 33 1 3.2656 -3.4340 1.5548 34 1 4.8577 -5.2695 1.1553 35 1 4.8629 -6.4458 -1.0079 36 1 3.2713 -5.7915 -2.7691 37 1 1.6735 -3.9617 -2.3666 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597769877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:19 Heat of formation + Delta-G solvation = 11.270275 kcal Electronic energy + Delta-G solvation = -20600.029108 eV Core-core repulsion = 17535.241101 eV Total energy + Delta-G solvation = -3064.788007 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.47773 -37.94849 -36.71636 -35.00302 -33.86371 -31.51887 -30.91676 -29.93664 -27.48489 -26.16274 -24.53282 -23.20208 -21.59324 -20.56770 -18.45503 -17.53928 -16.82976 -16.18857 -15.96359 -15.38360 -14.83644 -14.58911 -14.35380 -14.05098 -13.80706 -13.28682 -12.98529 -12.57580 -12.50896 -12.32850 -12.24645 -12.16864 -11.82785 -11.67977 -11.59546 -11.39583 -11.05761 -10.99972 -10.82757 -10.44247 -10.27704 -10.00498 -9.48322 -8.85594 -8.65506 -8.12520 -7.94298 -7.61955 -6.35311 -4.40405 2.36870 2.39968 2.74239 2.82553 3.12583 3.22825 3.24567 3.55074 3.62543 4.19584 4.27188 4.80223 5.00863 5.03825 5.17411 5.48075 5.71755 5.72424 5.79950 5.80969 5.89832 5.97276 6.14021 6.20000 6.24764 6.48905 6.58672 6.68815 6.82964 6.95262 7.12041 7.20390 7.36929 7.44454 7.55733 7.58597 7.71309 7.93897 7.97561 8.14113 8.61763 9.07990 9.22142 10.72068 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.007266 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.931371 B = 3852.413502 C = 5283.423575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.616 5.616 3 C 0.123 3.877 4 C -0.047 4.047 5 C 0.219 3.781 6 N -0.450 5.450 7 C 0.529 3.471 8 O -0.560 6.560 9 C 0.053 3.947 10 H 0.087 0.913 11 C -0.511 4.511 12 H 0.064 0.936 13 C 0.074 3.926 14 N -0.872 5.872 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.271 1.271 19 C -0.014 4.014 20 C -0.080 4.080 21 C -0.136 4.136 22 C -0.148 4.148 23 C -0.134 4.134 24 C -0.118 4.118 25 H 0.043 0.957 26 H 0.121 0.879 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.268 0.732 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 2.995 -0.588 3.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.350 5.350 3 C -0.002 4.002 4 C -0.088 4.088 5 C -0.099 4.099 6 N -0.128 5.128 7 C 0.321 3.679 8 O -0.438 6.438 9 C 0.032 3.968 10 H 0.105 0.895 11 C -0.549 4.549 12 H 0.083 0.917 13 C -0.131 4.131 14 N -0.508 5.508 15 Si 0.721 3.279 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.015 4.015 20 C -0.098 4.098 21 C -0.154 4.154 22 C -0.166 4.166 23 C -0.152 4.152 24 C -0.136 4.136 25 H 0.061 0.939 26 H 0.139 0.861 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.078 0.922 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.878 4.350 -0.637 4.781 hybrid contribution -0.972 -0.622 0.847 1.431 sum 0.906 3.728 0.210 3.842 Atomic orbital electron populations 1.22190 0.78619 1.05629 1.01206 1.47765 1.07418 1.04520 1.75264 1.21139 0.98816 0.86833 0.93452 1.19811 0.99912 0.87531 1.01554 1.29204 0.93307 0.94440 0.92945 1.81190 1.10314 1.12458 1.08836 1.21761 0.87433 0.85971 0.72781 1.90591 1.15091 1.87640 1.50513 1.18134 0.92524 0.85050 1.01091 0.89516 1.20616 1.03136 1.39782 0.91327 0.91739 1.24969 0.97462 0.94272 0.96428 1.69923 1.20258 1.35565 1.25006 0.86535 0.80171 0.77960 0.83215 1.20150 1.21015 1.19559 1.20034 0.93123 0.96600 0.91746 1.20837 0.94336 0.95626 0.98995 1.20967 0.99898 0.97639 0.96931 1.20799 1.00308 1.00911 0.94594 1.20892 0.97204 0.98519 0.98550 1.20981 0.98440 0.96987 0.97193 0.93883 0.86088 0.92897 0.89727 0.90480 0.87240 0.86736 0.92203 0.86941 0.87643 0.87790 0.87632 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 10.04 59.85 0.60 1.58 16 2 N -0.62 -9.98 2.87 -181.57 -0.52 -10.51 16 3 C 0.12 1.60 5.34 -4.04 -0.02 1.58 16 4 C -0.05 -0.53 6.03 -29.52 -0.18 -0.71 16 5 C 0.22 2.84 15.43 -20.76 -0.32 2.51 16 6 N -0.45 -6.94 18.54 42.15 0.78 -6.15 16 7 C 0.53 10.66 6.89 -10.99 -0.08 10.59 16 8 O -0.56 -12.43 14.91 5.55 0.08 -12.35 16 9 C 0.05 1.16 1.58 -94.08 -0.15 1.01 16 10 H 0.09 2.00 6.90 -51.93 -0.36 1.64 16 11 C -0.51 -11.64 5.55 -34.44 -0.19 -11.83 16 12 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 13 C 0.07 1.73 4.98 -17.82 -0.09 1.64 16 14 N -0.87 -21.31 12.86 55.43 0.71 -20.59 16 15 Si 0.89 18.42 29.54 -169.99 -5.02 13.40 16 16 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 C -0.01 -0.31 4.41 -104.62 -0.46 -0.77 16 20 C -0.08 -1.72 8.12 -39.58 -0.32 -2.05 16 21 C -0.14 -2.61 10.05 -39.58 -0.40 -3.01 16 22 C -0.15 -2.68 10.05 -39.59 -0.40 -3.08 16 23 C -0.13 -2.50 10.05 -39.59 -0.40 -2.90 16 24 C -0.12 -2.47 9.67 -39.58 -0.38 -2.85 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.12 2.19 4.64 -51.93 -0.24 1.95 16 27 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.08 1.22 7.50 -51.93 -0.39 0.83 16 29 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 33 H 0.11 2.45 7.87 -52.48 -0.41 2.04 16 34 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 35 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 37 H 0.11 2.23 7.96 -52.48 -0.42 1.81 16 LS Contribution 323.97 15.07 4.88 4.88 Total: -1.00 -27.53 323.97 -6.61 -34.13 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -4.74 Total: 5.49 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.78 Total: -8.30 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.97 Total: -37.25 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.08 Total: -12.35 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.02 Total: 13.40 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.53 -6.61 -34.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597769877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.404 kcal (2) G-P(sol) polarization free energy of solvation -27.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds