Wall clock time and date at job start Mon Mar 30 2020 01:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 119.99877 * 2 1 4 4 C 1.53001 * 109.47033 * 90.00165 * 3 2 1 5 5 C 1.47202 * 109.47257 * 179.97438 * 4 3 2 6 6 N 4.80471 * 118.48432 * 19.97315 * 2 1 3 7 7 C 1.34771 * 120.00259 * 180.27727 * 2 1 3 8 8 O 1.21289 * 120.00305 * 185.32927 * 7 2 1 9 9 C 1.50697 * 119.99899 * 5.32681 * 7 2 1 10 10 H 1.08999 * 109.47220 * 49.19306 * 9 7 2 11 11 C 1.50696 * 109.47452 * 289.18892 * 9 7 2 12 12 H 1.08005 * 119.99925 * 326.25046 * 11 9 7 13 13 C 1.37882 * 120.00306 * 146.24414 * 11 9 7 14 14 N 1.31513 * 119.99677 * 5.29804 * 13 11 9 15 15 Si 1.86799 * 120.00183 * 185.29212 * 13 11 9 16 16 H 1.48502 * 109.47150 * 90.00403 * 15 13 11 17 17 H 1.48503 * 109.47025 * 210.00074 * 15 13 11 18 18 H 1.48495 * 109.47157 * 330.00512 * 15 13 11 19 19 C 1.50703 * 109.47433 * 169.18963 * 9 7 2 20 20 C 1.38232 * 119.99869 * 66.74871 * 19 9 7 21 21 C 1.38239 * 120.00044 * 179.79288 * 20 19 9 22 22 C 1.38231 * 119.99671 * 0.43865 * 21 20 19 23 23 C 1.38228 * 120.00418 * 359.81679 * 22 21 20 24 24 C 1.38236 * 120.00288 * 247.02935 * 19 9 7 25 25 H 1.08996 * 109.47188 * 86.83091 * 1 2 3 26 26 H 1.08999 * 109.46690 * 206.83151 * 1 2 3 27 27 H 1.08997 * 109.46917 * 326.82787 * 1 2 3 28 28 H 1.08996 * 109.47075 * 209.99801 * 3 2 1 29 29 H 1.09000 * 109.47139 * 330.00204 * 3 2 1 30 30 H 1.08999 * 109.47353 * 299.99954 * 4 3 2 31 31 H 1.09000 * 109.47126 * 60.00031 * 4 3 2 32 32 H 0.96998 * 119.99999 * 179.97438 * 14 13 11 33 33 H 1.08008 * 120.00214 * 0.02562 * 20 19 9 34 34 H 1.07999 * 120.00087 * 180.28329 * 21 20 19 35 35 H 1.08001 * 119.99979 * 179.83625 * 22 21 20 36 36 H 1.08003 * 120.00596 * 179.97438 * 23 22 21 37 37 H 1.08005 * 119.99701 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4425 5 6 3.1890 2.9849 1.4426 6 7 3.7565 3.9691 1.4425 7 6 2.1389 -1.1671 -0.0056 8 8 3.3479 -1.1699 0.0919 9 6 1.3904 -2.4688 -0.1331 10 1 0.6920 -2.4061 -0.9677 11 6 0.6294 -2.7374 1.1396 12 1 1.0380 -2.4249 2.0892 13 6 -0.5886 -3.3820 1.0916 14 7 -1.0378 -3.8548 -0.0504 15 14 -1.6004 -3.5839 2.6488 16 1 -2.5047 -2.4165 2.8063 17 1 -2.4080 -4.8267 2.5567 18 1 -0.6930 -3.6688 3.8212 19 6 2.3682 -3.5887 -0.3795 20 6 3.2656 -3.9523 0.6072 21 6 4.1597 -4.9824 0.3828 22 6 4.1626 -5.6428 -0.8316 23 6 3.2688 -5.2758 -1.8201 24 6 2.3718 -4.2485 -1.5942 25 1 -0.3633 0.0568 -1.0260 26 1 -0.3633 -0.9170 0.4639 27 1 -0.3633 0.8602 0.5623 28 1 3.1499 1.1384 -0.5138 29 1 1.6084 2.0284 -0.5138 30 1 1.5001 1.8407 1.9564 31 1 3.0416 0.9508 1.9563 32 1 -1.8944 -4.3086 -0.0841 33 1 3.2656 -3.4340 1.5548 34 1 4.8577 -5.2695 1.1553 35 1 4.8629 -6.4458 -1.0079 36 1 3.2713 -5.7915 -2.7691 37 1 1.6735 -3.9617 -2.3666 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597769877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:19 Heat of formation + Delta-G solvation = -2.395968 kcal Electronic energy + Delta-G solvation = -20600.621721 eV Core-core repulsion = 17535.241101 eV Total energy + Delta-G solvation = -3065.380619 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.98421 -39.42198 -37.88815 -36.37860 -35.53269 -32.99268 -32.27460 -31.47495 -29.07800 -27.42712 -26.06969 -24.61445 -23.14270 -22.05482 -19.91327 -18.66894 -18.48883 -17.69572 -17.42496 -16.79814 -16.29882 -15.91727 -15.71812 -15.52219 -15.29798 -14.56421 -14.43363 -14.04271 -13.89358 -13.67740 -13.56367 -13.44241 -13.34447 -13.20054 -12.85904 -12.77841 -12.67709 -12.47902 -12.11873 -11.91973 -11.81615 -11.55525 -11.18815 -10.58890 -10.30166 -9.49909 -9.46026 -9.19046 -8.12959 -6.21452 0.81238 0.86048 1.48818 1.53548 1.59959 1.65771 1.77842 2.03139 2.33123 2.50039 3.13802 3.19040 3.32699 4.00412 4.13611 4.28056 4.34581 4.42405 4.51927 4.53638 4.61927 4.67410 4.90020 4.93456 4.94054 5.03746 5.07859 5.18948 5.41880 5.44365 5.52455 5.72906 5.83965 5.88184 5.93325 6.02755 6.31141 6.45101 6.54705 6.64287 6.82315 7.42086 7.55547 8.94357 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.007266 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.931371 B = 3852.413502 C = 5283.423575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.609 5.609 3 C 0.121 3.879 4 C -0.035 4.035 5 C 0.245 3.755 6 N -0.492 5.492 7 C 0.526 3.474 8 O -0.587 6.587 9 C 0.056 3.944 10 H 0.067 0.933 11 C -0.505 4.505 12 H 0.055 0.945 13 C 0.041 3.959 14 N -0.901 5.901 15 Si 0.945 3.055 16 H -0.260 1.260 17 H -0.293 1.293 18 H -0.276 1.276 19 C -0.041 4.041 20 C -0.104 4.104 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.133 4.133 24 C -0.141 4.141 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.140 0.860 31 H 0.104 0.896 32 H 0.266 0.734 33 H 0.098 0.902 34 H 0.132 0.868 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 3.124 -0.319 3.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.341 5.341 3 C -0.003 4.003 4 C -0.076 4.076 5 C -0.072 4.072 6 N -0.170 5.170 7 C 0.317 3.683 8 O -0.468 6.468 9 C 0.035 3.965 10 H 0.085 0.915 11 C -0.543 4.543 12 H 0.073 0.927 13 C -0.162 4.162 14 N -0.537 5.537 15 Si 0.770 3.230 16 H -0.185 1.185 17 H -0.219 1.219 18 H -0.201 1.201 19 C -0.042 4.042 20 C -0.123 4.123 21 C -0.157 4.157 22 C -0.163 4.163 23 C -0.151 4.151 24 C -0.159 4.159 25 H 0.068 0.932 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.086 0.914 29 H 0.129 0.871 30 H 0.158 0.842 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.150 0.850 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.812 4.519 -0.363 4.882 hybrid contribution -0.915 -0.682 0.718 1.349 sum 0.897 3.837 0.355 3.956 Atomic orbital electron populations 1.22206 0.77552 1.05828 1.02063 1.47703 1.08096 1.04549 1.73703 1.21318 0.98381 0.85912 0.94711 1.19760 1.00962 0.86288 1.00577 1.29276 0.92261 0.94005 0.91652 1.81226 1.11655 1.13918 1.10174 1.21455 0.87019 0.86742 0.73094 1.90564 1.15980 1.88158 1.52091 1.18007 0.92287 0.86390 0.99843 0.91547 1.20618 1.03145 1.39238 0.91262 0.92698 1.25474 0.98218 0.94131 0.98338 1.70019 1.20525 1.36716 1.26460 0.85757 0.78953 0.77925 0.80320 1.18463 1.21927 1.20061 1.20215 0.93976 0.97260 0.92730 1.20869 0.95747 0.97115 0.98534 1.21324 0.99438 0.96633 0.98278 1.21243 1.00287 1.01185 0.93616 1.21282 0.96173 0.97528 1.00088 1.21140 0.99582 0.98266 0.96955 0.93182 0.89178 0.88804 0.91378 0.87093 0.84202 0.87772 0.92438 0.88358 0.84964 0.83940 0.84553 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.84 10.04 127.77 1.28 3.12 16 2 N -0.61 -19.13 2.87 -846.76 -2.43 -21.56 16 3 C 0.12 2.92 5.34 86.38 0.46 3.38 16 4 C -0.03 -0.72 6.03 28.79 0.17 -0.54 16 5 C 0.25 5.92 15.43 89.44 1.38 7.30 16 6 N -0.49 -14.57 18.54 20.01 0.37 -14.19 16 7 C 0.53 21.51 6.89 87.66 0.60 22.12 16 8 O -0.59 -26.61 14.91 -3.06 -0.05 -26.66 16 9 C 0.06 2.52 1.58 -13.03 -0.02 2.50 16 10 H 0.07 3.20 6.90 -2.39 -0.02 3.19 16 11 C -0.50 -23.46 5.55 25.60 0.14 -23.32 16 12 H 0.05 2.60 7.82 -2.91 -0.02 2.58 16 13 C 0.04 1.92 4.98 84.66 0.42 2.34 16 14 N -0.90 -44.86 12.86 21.45 0.28 -44.58 16 15 Si 0.94 37.76 29.54 68.60 2.03 39.78 16 16 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 17 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 19 C -0.04 -1.87 4.41 -19.87 -0.09 -1.95 16 20 C -0.10 -4.58 8.12 22.27 0.18 -4.40 16 21 C -0.14 -5.15 10.05 22.27 0.22 -4.93 16 22 C -0.15 -4.92 10.05 22.27 0.22 -4.70 16 23 C -0.13 -4.78 10.05 22.27 0.22 -4.56 16 24 C -0.14 -5.99 9.67 22.27 0.22 -5.78 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 3.22 4.64 -2.39 -0.01 3.20 16 27 H 0.09 1.87 8.10 -2.39 -0.02 1.85 16 28 H 0.07 1.91 7.50 -2.39 -0.02 1.89 16 29 H 0.11 1.97 8.07 -2.39 -0.02 1.95 16 30 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.27 12.77 8.31 -92.71 -0.77 12.00 16 33 H 0.10 4.45 7.87 -2.91 -0.02 4.43 16 34 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 35 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 36 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 37 H 0.11 4.46 7.96 -2.91 -0.02 4.44 16 Total: -1.00 -60.94 323.97 6.69 -54.26 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 1.07 Total: 22.37 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 5.42 Total: -9.42 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -1.79 Total: -80.34 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.05 Total: -26.66 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.78 kcal Total: -60.94 6.69 -54.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597769877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.861 kcal (2) G-P(sol) polarization free energy of solvation -60.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds