Wall clock time and date at job start Mon Mar 30 2020 01:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 120.00039 * 2 1 4 4 C 1.53005 * 109.47006 * 270.00253 * 3 2 1 5 5 C 1.47204 * 109.47273 * 180.02562 * 4 3 2 6 6 N 4.80472 * 118.48476 * 340.02475 * 2 1 3 7 7 C 1.34778 * 120.00286 * 179.97438 * 2 1 3 8 8 O 1.21285 * 120.00192 * 184.70778 * 7 2 1 9 9 C 1.50700 * 119.99910 * 4.71123 * 7 2 1 10 10 H 1.09001 * 109.46547 * 334.46381 * 9 7 2 11 11 C 1.50703 * 109.46811 * 94.46103 * 9 7 2 12 12 H 1.08001 * 119.99716 * 237.06149 * 11 9 7 13 13 C 1.37873 * 119.99937 * 56.79472 * 11 9 7 14 14 N 1.31516 * 120.00112 * 9.56861 * 13 11 9 15 15 Si 1.86798 * 119.99899 * 189.56902 * 13 11 9 16 16 H 1.48500 * 109.47057 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.47302 * 119.99605 * 15 13 11 18 18 H 1.48494 * 109.47349 * 239.99657 * 15 13 11 19 19 C 1.50692 * 109.47305 * 214.46382 * 9 7 2 20 20 C 1.38239 * 120.00343 * 216.05130 * 19 9 7 21 21 C 1.38229 * 120.00385 * 179.80856 * 20 19 9 22 22 C 1.38238 * 119.99589 * 0.39617 * 21 20 19 23 23 C 1.38234 * 120.00237 * 359.85547 * 22 21 20 24 24 C 1.38236 * 120.00153 * 359.95834 * 23 22 21 25 25 H 1.09004 * 109.47081 * 265.20867 * 1 2 3 26 26 H 1.09001 * 109.46886 * 25.20784 * 1 2 3 27 27 H 1.08996 * 109.46890 * 145.21126 * 1 2 3 28 28 H 1.09005 * 109.47413 * 29.99515 * 3 2 1 29 29 H 1.08999 * 109.47782 * 150.00331 * 3 2 1 30 30 H 1.09006 * 109.46954 * 299.99302 * 4 3 2 31 31 H 1.08996 * 109.47282 * 59.99359 * 4 3 2 32 32 H 0.97001 * 119.99916 * 180.02562 * 14 13 11 33 33 H 1.08002 * 119.99108 * 359.97438 * 20 19 9 34 34 H 1.07993 * 120.00317 * 180.22623 * 21 20 19 35 35 H 1.08004 * 120.00004 * 179.83153 * 22 21 20 36 36 H 1.08003 * 120.00160 * 179.97438 * 23 22 21 37 37 H 1.07992 * 119.99830 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.1890 2.9849 -1.4426 6 7 3.7565 3.9690 -1.4427 7 6 2.1389 -1.1672 0.0005 8 8 3.3487 -1.1689 0.0867 9 6 1.3893 -2.4702 -0.1061 10 1 0.3754 -2.3378 0.2715 11 6 1.3358 -2.9022 -1.5489 12 1 0.3824 -3.0775 -2.0250 13 6 2.5037 -3.0684 -2.2625 14 7 3.6633 -3.0354 -1.6429 15 14 2.4390 -3.3406 -4.1094 16 1 1.0244 -3.3361 -4.5611 17 1 3.1819 -2.2535 -4.7963 18 1 3.0593 -4.6489 -4.4390 19 6 2.0950 -3.5238 0.7080 20 6 2.1338 -4.8315 0.2615 21 6 2.7845 -5.7972 1.0063 22 6 3.3894 -5.4568 2.2017 23 6 3.3462 -4.1502 2.6509 24 6 2.6987 -3.1836 1.9041 25 1 -0.3633 -0.0858 1.0241 26 1 -0.3633 0.9298 -0.4377 27 1 -0.3633 -0.8440 -0.5863 28 1 1.6084 2.0285 0.5138 29 1 3.1500 1.1385 0.5138 30 1 3.0416 0.9508 -1.9564 31 1 1.5001 1.8407 -1.9564 32 1 4.4850 -3.1520 -2.1450 33 1 1.6579 -5.0980 -0.6707 34 1 2.8179 -6.8181 0.6556 35 1 3.8955 -6.2118 2.7851 36 1 3.8184 -3.8843 3.5851 37 1 2.6654 -2.1628 2.2549 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597769878.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:22 Heat of formation + Delta-G solvation = 26.374620 kcal Electronic energy + Delta-G solvation = -20991.387213 eV Core-core repulsion = 17927.254180 eV Total energy + Delta-G solvation = -3064.133033 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.26540 -37.76113 -36.56510 -34.78004 -33.53376 -31.53892 -30.61519 -29.73306 -27.36135 -26.18200 -24.45777 -23.04105 -21.34387 -20.36857 -18.35753 -17.40234 -16.80070 -15.99528 -15.66245 -15.09051 -14.81652 -14.42681 -14.31024 -13.86190 -13.61552 -13.22872 -12.70472 -12.55859 -12.39999 -12.24755 -12.18255 -12.06529 -11.74848 -11.70706 -11.40166 -11.27361 -11.00059 -10.75182 -10.67901 -10.41416 -10.06917 -9.67589 -9.42353 -8.61355 -8.32462 -7.91417 -7.75053 -7.40229 -6.03937 -4.23568 2.52501 2.58260 2.85421 2.93123 3.20890 3.32246 3.32431 3.70094 4.05725 4.33609 4.39152 4.96482 5.13076 5.19996 5.31640 5.58582 5.60973 5.83251 5.87757 5.94119 5.95753 6.03417 6.14106 6.25333 6.30646 6.46539 6.62682 6.69480 6.81425 7.12295 7.16569 7.27851 7.51818 7.61779 7.69343 7.70995 7.78848 8.13024 8.21840 8.34269 8.76217 9.41267 9.56689 10.90514 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015407 B = 0.007437 C = 0.005897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.958427 B = 3763.879395 C = 4747.313547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.636 5.636 3 C 0.128 3.872 4 C -0.048 4.048 5 C 0.221 3.779 6 N -0.454 5.454 7 C 0.523 3.477 8 O -0.501 6.501 9 C 0.064 3.936 10 H 0.053 0.947 11 C -0.544 4.544 12 H 0.067 0.933 13 C 0.075 3.925 14 N -0.810 5.810 15 Si 0.878 3.122 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.001 4.001 20 C -0.068 4.068 21 C -0.140 4.140 22 C -0.149 4.149 23 C -0.136 4.136 24 C -0.116 4.116 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.262 0.738 33 H 0.124 0.876 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.987 1.713 3.770 8.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.374 5.374 3 C 0.002 3.998 4 C -0.090 4.090 5 C -0.097 4.097 6 N -0.132 5.132 7 C 0.313 3.687 8 O -0.372 6.372 9 C 0.043 3.957 10 H 0.071 0.929 11 C -0.581 4.581 12 H 0.085 0.915 13 C -0.136 4.136 14 N -0.440 5.440 15 Si 0.705 3.295 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.002 4.002 20 C -0.086 4.086 21 C -0.158 4.158 22 C -0.167 4.167 23 C -0.154 4.154 24 C -0.134 4.134 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.072 0.928 33 H 0.142 0.858 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.212 3.130 3.815 7.177 hybrid contribution 0.064 -0.401 -1.324 1.385 sum -5.148 2.729 2.491 6.337 Atomic orbital electron populations 1.21683 0.80517 1.02742 1.00858 1.48106 1.06302 1.05134 1.77826 1.21016 0.98991 0.86694 0.93094 1.19855 0.99767 0.87506 1.01825 1.29257 0.93253 0.94403 0.92796 1.81169 1.10323 1.12655 1.09025 1.21657 0.88557 0.84742 0.73696 1.90649 1.14080 1.86367 1.46057 1.17940 0.93423 0.87628 0.96754 0.92874 1.20553 0.93138 1.50654 0.93796 0.91516 1.25066 0.95751 0.94878 0.97888 1.70222 0.97198 1.42007 1.34588 0.86759 0.78288 0.77969 0.86477 1.19568 1.20996 1.20968 1.19868 0.94416 0.94643 0.91252 1.20974 0.97265 0.92377 0.98025 1.20974 1.00463 0.98685 0.95711 1.20745 1.02480 0.95952 0.97496 1.20785 1.01381 0.93656 0.99626 1.20866 0.99199 0.97733 0.95628 0.93851 0.92361 0.90010 0.91021 0.89663 0.86638 0.87525 0.92804 0.85786 0.88014 0.88216 0.88180 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 9.82 59.85 0.59 1.67 16 2 N -0.64 -10.44 2.87 -181.56 -0.52 -10.96 16 3 C 0.13 1.80 5.38 -4.04 -0.02 1.78 16 4 C -0.05 -0.63 6.03 -29.51 -0.18 -0.81 16 5 C 0.22 3.20 15.43 -20.76 -0.32 2.88 16 6 N -0.45 -7.61 18.54 42.15 0.78 -6.83 16 7 C 0.52 11.11 5.28 -10.98 -0.06 11.05 16 8 O -0.50 -12.49 12.99 5.55 0.07 -12.42 16 9 C 0.06 1.38 2.06 -94.08 -0.19 1.19 16 10 H 0.05 1.03 6.27 -51.93 -0.33 0.70 16 11 C -0.54 -12.69 7.11 -34.44 -0.24 -12.94 16 12 H 0.07 1.52 7.83 -52.49 -0.41 1.11 16 13 C 0.07 1.84 4.56 -17.82 -0.08 1.76 16 14 N -0.81 -21.52 9.76 55.43 0.54 -20.98 16 15 Si 0.88 19.37 29.55 -169.99 -5.02 14.35 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C 0.00 -0.02 4.18 -104.63 -0.44 -0.45 16 20 C -0.07 -1.51 8.33 -39.58 -0.33 -1.84 16 21 C -0.14 -2.79 10.05 -39.58 -0.40 -3.19 16 22 C -0.15 -2.83 10.05 -39.58 -0.40 -3.22 16 23 C -0.14 -2.68 10.05 -39.58 -0.40 -3.08 16 24 C -0.12 -2.49 8.51 -39.58 -0.34 -2.83 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.57 8.04 -51.93 -0.42 0.15 16 27 H 0.08 1.13 6.46 -51.93 -0.34 0.79 16 28 H 0.07 0.79 8.07 -51.93 -0.42 0.38 16 29 H 0.08 1.38 7.36 -51.93 -0.38 1.00 16 30 H 0.12 1.83 8.14 -51.93 -0.42 1.41 16 31 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.12 2.79 6.70 -52.49 -0.35 2.44 16 34 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.10 1.61 8.06 -52.48 -0.42 1.18 16 36 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 37 H 0.10 2.10 7.06 -52.49 -0.37 1.73 16 LS Contribution 316.56 15.07 4.77 4.77 Total: -1.00 -29.74 316.56 -6.87 -36.61 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.68 Total: 3.49 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -2.81 Total: -8.03 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.80 Total: -38.77 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.42 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.74 -6.87 -36.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597769878.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.987 kcal (2) G-P(sol) polarization free energy of solvation -29.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds