Wall clock time and date at job start Mon Mar 30 2020 01:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 120.00039 * 2 1 4 4 C 1.53005 * 109.47006 * 270.00253 * 3 2 1 5 5 C 1.47204 * 109.47273 * 180.02562 * 4 3 2 6 6 N 4.80472 * 118.48476 * 340.02475 * 2 1 3 7 7 C 1.34778 * 120.00286 * 179.97438 * 2 1 3 8 8 O 1.21285 * 120.00192 * 184.70778 * 7 2 1 9 9 C 1.50700 * 119.99910 * 4.71123 * 7 2 1 10 10 H 1.09001 * 109.46547 * 334.46381 * 9 7 2 11 11 C 1.50703 * 109.46811 * 94.46103 * 9 7 2 12 12 H 1.08001 * 119.99716 * 237.06149 * 11 9 7 13 13 C 1.37873 * 119.99937 * 56.79472 * 11 9 7 14 14 N 1.31516 * 120.00112 * 9.56861 * 13 11 9 15 15 Si 1.86798 * 119.99899 * 189.56902 * 13 11 9 16 16 H 1.48500 * 109.47057 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.47302 * 119.99605 * 15 13 11 18 18 H 1.48494 * 109.47349 * 239.99657 * 15 13 11 19 19 C 1.50692 * 109.47305 * 214.46382 * 9 7 2 20 20 C 1.38239 * 120.00343 * 216.05130 * 19 9 7 21 21 C 1.38229 * 120.00385 * 179.80856 * 20 19 9 22 22 C 1.38238 * 119.99589 * 0.39617 * 21 20 19 23 23 C 1.38234 * 120.00237 * 359.85547 * 22 21 20 24 24 C 1.38236 * 120.00153 * 359.95834 * 23 22 21 25 25 H 1.09004 * 109.47081 * 265.20867 * 1 2 3 26 26 H 1.09001 * 109.46886 * 25.20784 * 1 2 3 27 27 H 1.08996 * 109.46890 * 145.21126 * 1 2 3 28 28 H 1.09005 * 109.47413 * 29.99515 * 3 2 1 29 29 H 1.08999 * 109.47782 * 150.00331 * 3 2 1 30 30 H 1.09006 * 109.46954 * 299.99302 * 4 3 2 31 31 H 1.08996 * 109.47282 * 59.99359 * 4 3 2 32 32 H 0.97001 * 119.99916 * 180.02562 * 14 13 11 33 33 H 1.08002 * 119.99108 * 359.97438 * 20 19 9 34 34 H 1.07993 * 120.00317 * 180.22623 * 21 20 19 35 35 H 1.08004 * 120.00004 * 179.83153 * 22 21 20 36 36 H 1.08003 * 120.00160 * 179.97438 * 23 22 21 37 37 H 1.07992 * 119.99830 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.1890 2.9849 -1.4426 6 7 3.7565 3.9690 -1.4427 7 6 2.1389 -1.1672 0.0005 8 8 3.3487 -1.1689 0.0867 9 6 1.3893 -2.4702 -0.1061 10 1 0.3754 -2.3378 0.2715 11 6 1.3358 -2.9022 -1.5489 12 1 0.3824 -3.0775 -2.0250 13 6 2.5037 -3.0684 -2.2625 14 7 3.6633 -3.0354 -1.6429 15 14 2.4390 -3.3406 -4.1094 16 1 1.0244 -3.3361 -4.5611 17 1 3.1819 -2.2535 -4.7963 18 1 3.0593 -4.6489 -4.4390 19 6 2.0950 -3.5238 0.7080 20 6 2.1338 -4.8315 0.2615 21 6 2.7845 -5.7972 1.0063 22 6 3.3894 -5.4568 2.2017 23 6 3.3462 -4.1502 2.6509 24 6 2.6987 -3.1836 1.9041 25 1 -0.3633 -0.0858 1.0241 26 1 -0.3633 0.9298 -0.4377 27 1 -0.3633 -0.8440 -0.5863 28 1 1.6084 2.0285 0.5138 29 1 3.1500 1.1385 0.5138 30 1 3.0416 0.9508 -1.9564 31 1 1.5001 1.8407 -1.9564 32 1 4.4850 -3.1520 -2.1450 33 1 1.6579 -5.0980 -0.6707 34 1 2.8179 -6.8181 0.6556 35 1 3.8955 -6.2118 2.7851 36 1 3.8184 -3.8843 3.5851 37 1 2.6654 -2.1628 2.2549 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597769878.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:22 Heat of formation + Delta-G solvation = 10.511764 kcal Electronic energy + Delta-G solvation = -20992.075078 eV Core-core repulsion = 17927.254180 eV Total energy + Delta-G solvation = -3064.820898 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.80082 -39.25536 -37.85768 -36.19235 -35.27806 -32.99246 -32.09425 -31.32480 -29.00230 -27.31730 -26.07254 -24.49580 -22.94215 -21.91483 -19.85199 -18.60012 -18.42745 -17.49300 -17.24607 -16.58217 -16.40563 -15.73939 -15.68494 -15.40156 -15.15479 -14.59068 -14.25859 -14.00277 -13.83794 -13.67871 -13.56267 -13.40008 -13.23604 -12.95000 -12.82210 -12.78273 -12.62624 -12.38380 -12.14114 -11.84951 -11.69503 -11.31729 -11.12674 -10.48402 -9.97902 -9.37514 -9.23415 -9.01135 -7.90079 -6.11575 0.93151 0.99828 1.43277 1.50753 1.57105 1.65779 1.74855 2.37578 2.46700 2.58786 3.17653 3.32092 3.40455 4.06046 4.17565 4.35502 4.40041 4.54399 4.55211 4.60214 4.66464 4.78375 4.90866 4.98120 5.03908 5.10452 5.13277 5.20963 5.26962 5.53698 5.60088 5.80134 5.93851 6.00120 6.04965 6.08165 6.48552 6.52201 6.59337 6.75115 7.04551 7.54269 8.01332 9.01912 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015407 B = 0.007437 C = 0.005897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.958427 B = 3763.879395 C = 4747.313547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.632 5.632 3 C 0.128 3.872 4 C -0.035 4.035 5 C 0.244 3.756 6 N -0.491 5.491 7 C 0.523 3.477 8 O -0.547 6.547 9 C 0.055 3.945 10 H 0.072 0.928 11 C -0.536 4.536 12 H 0.070 0.930 13 C 0.039 3.961 14 N -0.840 5.840 15 Si 0.927 3.073 16 H -0.258 1.258 17 H -0.292 1.292 18 H -0.292 1.292 19 C -0.019 4.019 20 C -0.091 4.091 21 C -0.145 4.145 22 C -0.148 4.148 23 C -0.141 4.141 24 C -0.133 4.133 25 H 0.060 0.940 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.142 0.858 32 H 0.249 0.751 33 H 0.110 0.890 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.512 2.004 4.233 9.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.368 5.368 3 C 0.003 3.997 4 C -0.077 4.077 5 C -0.073 4.073 6 N -0.170 5.170 7 C 0.313 3.687 8 O -0.422 6.422 9 C 0.033 3.967 10 H 0.090 0.910 11 C -0.574 4.574 12 H 0.088 0.912 13 C -0.168 4.168 14 N -0.472 5.472 15 Si 0.754 3.246 16 H -0.182 1.182 17 H -0.219 1.219 18 H -0.219 1.219 19 C -0.020 4.020 20 C -0.109 4.109 21 C -0.163 4.163 22 C -0.166 4.166 23 C -0.159 4.159 24 C -0.151 4.151 25 H 0.078 0.922 26 H 0.116 0.884 27 H 0.088 0.912 28 H 0.131 0.869 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.160 0.840 32 H 0.058 0.942 33 H 0.128 0.872 34 H 0.143 0.857 35 H 0.152 0.848 36 H 0.144 0.856 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.805 3.445 4.272 8.742 hybrid contribution 0.460 -0.505 -1.399 1.557 sum -6.344 2.940 2.872 7.559 Atomic orbital electron populations 1.21938 0.77857 1.04367 1.02195 1.48010 1.07979 1.04587 1.76243 1.21135 0.98398 0.86490 0.93692 1.19792 1.00688 0.85863 1.01336 1.29333 0.92312 0.94015 0.91595 1.81198 1.11432 1.14049 1.10292 1.21454 0.87916 0.85931 0.73361 1.90623 1.15943 1.87274 1.48353 1.18045 0.94552 0.88180 0.95891 0.91042 1.20778 0.92801 1.49147 0.94644 0.91192 1.25566 0.95630 0.95090 1.00523 1.70399 0.97281 1.44405 1.35136 0.85996 0.78532 0.76863 0.83232 1.18154 1.21907 1.21917 1.20012 0.95170 0.94967 0.91875 1.20984 0.98694 0.93070 0.98159 1.21290 0.99666 0.99450 0.95890 1.21126 1.01760 0.96492 0.97256 1.21148 1.00624 0.93711 1.00367 1.20944 1.00118 0.98044 0.95978 0.92157 0.88439 0.91242 0.86909 0.92371 0.89351 0.83982 0.94158 0.87227 0.85711 0.84795 0.85590 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.74 9.82 127.77 1.25 2.99 16 2 N -0.63 -19.68 2.87 -846.73 -2.43 -22.12 16 3 C 0.13 3.36 5.38 86.38 0.46 3.82 16 4 C -0.04 -0.87 6.03 28.79 0.17 -0.70 16 5 C 0.24 6.76 15.43 89.44 1.38 8.14 16 6 N -0.49 -16.02 18.54 20.01 0.37 -15.65 16 7 C 0.52 22.19 5.28 87.66 0.46 22.65 16 8 O -0.55 -27.97 12.99 -3.04 -0.04 -28.01 16 9 C 0.05 2.36 2.06 -13.03 -0.03 2.33 16 10 H 0.07 2.71 6.27 -2.39 -0.01 2.70 16 11 C -0.54 -24.95 7.11 25.60 0.18 -24.77 16 12 H 0.07 3.13 7.83 -2.91 -0.02 3.11 16 13 C 0.04 1.93 4.56 84.65 0.39 2.32 16 14 N -0.84 -45.81 9.76 21.45 0.21 -45.60 16 15 Si 0.93 40.09 29.55 68.60 2.03 42.11 16 16 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 17 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 19 C -0.02 -0.87 4.18 -19.87 -0.08 -0.95 16 20 C -0.09 -4.04 8.33 22.27 0.19 -3.85 16 21 C -0.14 -5.64 10.05 22.27 0.22 -5.41 16 22 C -0.15 -5.36 10.05 22.27 0.22 -5.13 16 23 C -0.14 -5.35 10.05 22.27 0.22 -5.13 16 24 C -0.13 -5.71 8.51 22.27 0.19 -5.52 16 25 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.10 1.42 8.04 -2.39 -0.02 1.40 16 27 H 0.07 1.74 6.46 -2.39 -0.02 1.73 16 28 H 0.11 2.07 8.07 -2.38 -0.02 2.05 16 29 H 0.06 1.88 7.36 -2.39 -0.02 1.86 16 30 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 31 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 33 H 0.11 5.05 6.70 -2.91 -0.02 5.03 16 34 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 35 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 36 H 0.13 4.04 8.06 -2.91 -0.02 4.01 16 37 H 0.09 4.06 7.06 -2.91 -0.02 4.04 16 Total: -1.00 -65.98 316.56 6.45 -59.53 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 1.07 Total: 18.93 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 5.24 Total: -9.20 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -1.85 Total: -83.37 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.04 Total: -28.01 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.11 kcal Total: -65.98 6.45 -59.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597769878.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.045 kcal (2) G-P(sol) polarization free energy of solvation -65.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds