Wall clock time and date at job start Mon Mar 30 2020 01:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47106 * 2 1 4 4 C 1.50696 * 109.46815 * 239.99610 * 2 1 3 5 5 C 1.38365 * 119.84509 * 100.00337 * 4 2 1 6 6 C 1.37947 * 120.14940 * 179.97438 * 5 4 2 7 7 C 1.39629 * 119.84839 * 359.97438 * 6 5 4 8 8 C 1.43205 * 120.15217 * 180.02562 * 7 6 5 9 9 N 6.84433 * 109.47126 * 239.99681 * 2 1 3 10 10 C 1.39630 * 119.69955 * 0.27680 * 7 6 5 11 11 C 1.37951 * 119.84578 * 359.46927 * 10 7 6 12 12 N 1.46901 * 109.46605 * 119.99867 * 2 1 3 13 13 C 1.47490 * 110.99395 * 199.02699 * 12 2 1 14 14 C 1.53514 * 87.92894 * 138.70318 * 13 12 2 15 15 O 1.42909 * 114.16985 * 87.62218 * 14 13 12 16 16 C 1.50701 * 114.16921 * 220.32451 * 14 13 12 17 17 H 1.08002 * 119.99338 * 93.84730 * 16 14 13 18 18 C 1.37874 * 120.00279 * 273.84281 * 16 14 13 19 19 N 1.31521 * 119.99603 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 119.99997 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46844 * 60.00360 * 20 18 16 22 22 H 1.48503 * 109.47108 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47248 * 300.00222 * 20 18 16 24 24 C 1.47475 * 111.00167 * 294.99333 * 12 2 1 25 25 H 1.09000 * 109.47357 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47249 * 300.00225 * 1 2 3 27 27 H 1.09003 * 109.47472 * 60.00358 * 1 2 3 28 28 H 1.07993 * 119.92724 * 359.97438 * 5 4 2 29 29 H 1.08003 * 120.07687 * 179.97438 * 6 5 4 30 30 H 1.07999 * 120.08232 * 179.69881 * 10 7 6 31 31 H 1.08002 * 119.92809 * 180.23515 * 11 10 7 32 32 H 1.08998 * 113.47462 * 253.46991 * 13 12 2 33 33 H 1.08994 * 113.47681 * 23.93969 * 13 12 2 34 34 H 0.96701 * 113.99619 * 86.15612 * 15 14 13 35 35 H 0.96999 * 119.99501 * 179.97438 * 19 18 16 36 36 H 1.09000 * 113.47927 * 336.07482 * 24 12 2 37 37 H 1.09004 * 113.47300 * 106.53329 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 -1.2304 5 6 2.4583 0.0231 -2.3235 6 6 2.9197 -0.6208 -3.4528 7 6 2.9568 -2.0161 -3.4910 8 6 3.4351 -2.6912 -4.6598 9 7 3.8115 -3.2268 -5.5882 10 6 2.5204 -2.7502 -2.3864 11 6 2.0662 -2.0934 -1.2615 12 7 2.0195 -0.6925 1.1995 13 6 3.4230 -0.3359 1.4797 14 6 3.0495 -0.2643 2.9670 15 8 3.1499 -1.5121 3.6563 16 6 3.6876 0.8818 3.7089 17 1 3.1574 1.8163 3.8180 18 6 4.9482 0.7372 4.2484 19 7 5.5939 -0.4007 4.1151 20 14 5.7394 2.1581 5.1674 21 1 4.8923 2.5290 6.3293 22 1 7.0850 1.7505 5.6453 23 1 5.8700 3.3245 4.2577 24 6 1.6472 0.0421 2.4229 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.4295 1.1022 -2.2924 29 1 3.2516 -0.0470 -4.3055 30 1 2.5417 -3.8297 -2.4111 31 1 1.7319 -2.6598 -0.4049 32 1 4.1284 -1.1336 1.2470 33 1 3.7190 0.6253 1.0596 34 1 4.0343 -1.7027 3.9979 35 1 6.4809 -0.5023 4.4943 36 1 1.4693 1.1042 2.2544 37 1 0.8477 -0.4352 2.9895 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617443500.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:47 Heat of formation + Delta-G solvation = 41.711783 kcal Electronic energy + Delta-G solvation = -20256.846115 eV Core-core repulsion = 17193.378151 eV Total energy + Delta-G solvation = -3063.467964 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.06363 -38.83202 -36.55680 -34.86097 -32.69361 -32.05439 -31.07840 -29.77049 -27.11440 -25.35407 -24.22370 -23.53100 -22.70136 -20.34510 -18.89979 -18.66635 -17.33508 -15.92358 -15.67594 -15.10414 -14.78463 -14.54894 -14.19743 -14.04086 -13.92348 -13.57349 -13.41981 -13.16431 -12.76295 -12.53643 -12.22063 -12.06704 -11.92419 -11.64316 -11.49839 -11.25093 -11.10460 -10.89897 -10.76973 -10.59878 -10.29380 -10.05217 -9.31998 -9.00941 -8.73239 -8.63286 -8.24095 -7.96786 -6.30713 -4.40671 0.76413 1.36985 2.59249 2.92576 3.18124 3.24354 3.26128 3.83315 3.87769 4.21564 4.56777 4.81496 4.85289 4.91528 4.98867 5.34637 5.42381 5.44908 5.55552 5.66969 5.78856 5.88039 5.93826 6.02882 6.07936 6.21351 6.25879 6.27489 6.33832 6.41869 6.63577 6.70106 6.85251 7.01275 7.08443 7.31078 7.40732 7.72744 7.88676 7.96898 8.61245 9.29826 9.64290 10.75234 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.004430 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.059395 B = 6319.399949 C = 6734.117859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.073 3.927 3 H 0.056 0.944 4 C -0.030 4.030 5 C -0.121 4.121 6 C -0.072 4.072 7 C -0.046 4.046 8 C 0.263 3.737 9 N -0.433 5.433 10 C -0.073 4.073 11 C -0.090 4.090 12 N -0.463 5.463 13 C -0.019 4.019 14 C 0.248 3.752 15 O -0.570 6.570 16 C -0.537 4.537 17 H 0.065 0.935 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.903 3.097 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.007 3.993 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.144 0.856 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.390 0.610 35 H 0.272 0.728 36 H 0.064 0.936 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.914 1.219 -9.363 11.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.037 4.037 3 H 0.074 0.926 4 C -0.031 4.031 5 C -0.139 4.139 6 C -0.093 4.093 7 C -0.049 4.049 8 C -0.052 4.052 9 N -0.108 5.108 10 C -0.093 4.093 11 C -0.108 4.108 12 N -0.186 5.186 13 C -0.148 4.148 14 C 0.206 3.794 15 O -0.383 6.383 16 C -0.575 4.575 17 H 0.084 0.916 18 C -0.130 4.130 19 N -0.538 5.538 20 Si 0.730 3.270 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.201 1.201 24 C -0.122 4.122 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.162 0.838 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.246 0.754 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.995 -0.444 -11.034 13.072 hybrid contribution 1.263 1.918 0.845 2.447 sum -5.732 1.474 -10.190 11.784 Atomic orbital electron populations 1.21784 0.93532 1.02636 1.01567 1.21294 0.95868 0.95823 0.90672 0.92637 1.20143 0.94480 0.94113 0.94387 1.20986 0.99918 1.00252 0.92783 1.21033 0.97797 0.92047 0.98424 1.15987 1.06360 0.92712 0.89851 1.25824 0.93178 0.93268 0.92913 1.81220 1.09878 1.08658 1.11091 1.21207 0.96458 0.99966 0.91685 1.21095 0.98101 0.94140 0.97453 1.69023 1.07272 1.42882 0.99382 1.24688 0.89541 0.98765 1.01792 1.19342 0.89284 0.83755 0.87007 1.86027 1.38753 1.38189 1.75287 1.21543 1.01165 0.98933 1.35863 0.91640 1.25050 0.96629 0.96305 0.95022 1.69283 1.14321 1.24652 1.45522 0.86468 0.78375 0.81985 0.80125 1.19927 1.20992 1.20056 1.24027 1.00613 0.96238 0.91322 0.91788 0.92022 0.92636 0.85250 0.85380 0.85241 0.83831 0.91296 0.92371 0.75399 0.91736 0.91774 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.15 37.16 0.34 -1.36 16 2 C 0.07 1.06 1.88 -68.87 -0.13 0.93 16 3 H 0.06 0.82 7.41 -51.93 -0.38 0.44 16 4 C -0.03 -0.40 4.68 -104.53 -0.49 -0.89 16 5 C -0.12 -1.37 9.65 -39.64 -0.38 -1.75 16 6 C -0.07 -0.77 9.76 -39.17 -0.38 -1.15 16 7 C -0.05 -0.53 5.73 -106.93 -0.61 -1.14 16 8 C 0.26 3.34 15.33 -22.47 -0.34 2.99 16 9 N -0.43 -6.32 18.54 41.83 0.78 -5.54 16 10 C -0.07 -0.84 9.76 -39.17 -0.38 -1.22 16 11 C -0.09 -1.17 9.30 -39.64 -0.37 -1.54 16 12 N -0.46 -8.48 5.36 -237.99 -1.28 -9.76 16 13 C -0.02 -0.40 6.86 -7.54 -0.05 -0.45 16 14 C 0.25 5.92 1.57 -91.24 -0.14 5.77 16 15 O -0.57 -14.77 13.54 -35.23 -0.48 -15.25 16 16 C -0.54 -13.70 8.68 -34.44 -0.30 -13.99 16 17 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 18 C 0.07 1.83 5.40 -17.82 -0.10 1.74 16 19 N -0.90 -23.36 11.02 55.43 0.61 -22.75 16 20 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 C 0.01 0.13 5.98 -7.55 -0.05 0.09 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.77 7.34 -51.93 -0.38 0.39 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.13 1.24 8.03 -52.49 -0.42 0.82 16 29 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 30 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.14 1.98 7.70 -52.49 -0.40 1.58 16 32 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.06 1.24 7.57 -51.93 -0.39 0.84 16 34 H 0.39 10.38 6.34 45.56 0.29 10.67 16 35 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.06 1.20 7.79 -51.93 -0.40 0.79 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 320.03 15.07 4.82 4.82 Total: -1.00 -27.14 320.03 -8.13 -35.27 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -4.18 Total: 10.44 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -3.39 Total: -11.97 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.11 Total: -38.04 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.48 Total: -15.25 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.14 -8.13 -35.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617443500.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.986 kcal (2) G-P(sol) polarization free energy of solvation -27.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds