Wall clock time and date at job start Mon Mar 30 2020 01:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47106 * 2 1 4 4 C 1.50696 * 109.46815 * 239.99610 * 2 1 3 5 5 C 1.38365 * 119.84509 * 100.00337 * 4 2 1 6 6 C 1.37947 * 120.14940 * 179.97438 * 5 4 2 7 7 C 1.39629 * 119.84839 * 359.97438 * 6 5 4 8 8 C 1.43205 * 120.15217 * 180.02562 * 7 6 5 9 9 N 6.84433 * 109.47126 * 239.99681 * 2 1 3 10 10 C 1.39630 * 119.69955 * 0.27680 * 7 6 5 11 11 C 1.37951 * 119.84578 * 359.46927 * 10 7 6 12 12 N 1.46901 * 109.46605 * 119.99867 * 2 1 3 13 13 C 1.47490 * 110.99395 * 199.02699 * 12 2 1 14 14 C 1.53514 * 87.92894 * 138.70318 * 13 12 2 15 15 O 1.42909 * 114.16985 * 87.62218 * 14 13 12 16 16 C 1.50701 * 114.16921 * 220.32451 * 14 13 12 17 17 H 1.08002 * 119.99338 * 93.84730 * 16 14 13 18 18 C 1.37874 * 120.00279 * 273.84281 * 16 14 13 19 19 N 1.31521 * 119.99603 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 119.99997 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46844 * 60.00360 * 20 18 16 22 22 H 1.48503 * 109.47108 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47248 * 300.00222 * 20 18 16 24 24 C 1.47475 * 111.00167 * 294.99333 * 12 2 1 25 25 H 1.09000 * 109.47357 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47249 * 300.00225 * 1 2 3 27 27 H 1.09003 * 109.47472 * 60.00358 * 1 2 3 28 28 H 1.07993 * 119.92724 * 359.97438 * 5 4 2 29 29 H 1.08003 * 120.07687 * 179.97438 * 6 5 4 30 30 H 1.07999 * 120.08232 * 179.69881 * 10 7 6 31 31 H 1.08002 * 119.92809 * 180.23515 * 11 10 7 32 32 H 1.08998 * 113.47462 * 253.46991 * 13 12 2 33 33 H 1.08994 * 113.47681 * 23.93969 * 13 12 2 34 34 H 0.96701 * 113.99619 * 86.15612 * 15 14 13 35 35 H 0.96999 * 119.99501 * 179.97438 * 19 18 16 36 36 H 1.09000 * 113.47927 * 336.07482 * 24 12 2 37 37 H 1.09004 * 113.47300 * 106.53329 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 -1.2304 5 6 2.4583 0.0231 -2.3235 6 6 2.9197 -0.6208 -3.4528 7 6 2.9568 -2.0161 -3.4910 8 6 3.4351 -2.6912 -4.6598 9 7 3.8115 -3.2268 -5.5882 10 6 2.5204 -2.7502 -2.3864 11 6 2.0662 -2.0934 -1.2615 12 7 2.0195 -0.6925 1.1995 13 6 3.4230 -0.3359 1.4797 14 6 3.0495 -0.2643 2.9670 15 8 3.1499 -1.5121 3.6563 16 6 3.6876 0.8818 3.7089 17 1 3.1574 1.8163 3.8180 18 6 4.9482 0.7372 4.2484 19 7 5.5939 -0.4007 4.1151 20 14 5.7394 2.1581 5.1674 21 1 4.8923 2.5290 6.3293 22 1 7.0850 1.7505 5.6453 23 1 5.8700 3.3245 4.2577 24 6 1.6472 0.0421 2.4229 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.4295 1.1022 -2.2924 29 1 3.2516 -0.0470 -4.3055 30 1 2.5417 -3.8297 -2.4111 31 1 1.7319 -2.6598 -0.4049 32 1 4.1284 -1.1336 1.2470 33 1 3.7190 0.6253 1.0596 34 1 4.0343 -1.7027 3.9979 35 1 6.4809 -0.5023 4.4943 36 1 1.4693 1.1042 2.2544 37 1 0.8477 -0.4352 2.9895 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617443500.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:46 Heat of formation + Delta-G solvation = 24.449626 kcal Electronic energy + Delta-G solvation = -20257.594658 eV Core-core repulsion = 17193.378151 eV Total energy + Delta-G solvation = -3064.216507 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.36951 -40.06826 -37.66605 -36.46331 -34.15839 -33.91085 -31.98713 -30.84623 -28.81085 -26.87702 -25.76361 -24.78867 -23.64438 -21.61012 -20.38383 -19.84321 -19.15870 -17.15308 -17.05844 -16.85427 -16.19525 -15.62463 -15.53846 -15.47398 -15.06475 -14.70976 -14.64029 -14.32464 -13.93111 -13.80348 -13.55586 -13.45929 -13.32734 -13.11412 -12.91634 -12.78426 -12.47058 -12.37182 -12.21992 -11.99383 -11.81652 -11.65246 -11.06448 -10.59134 -9.99722 -9.90437 -9.67554 -9.59293 -8.21680 -6.38964 -0.19500 0.47199 1.45530 1.47156 1.54787 1.58497 1.92792 2.39828 2.85218 2.92225 2.99751 3.25283 3.71734 3.93752 4.01701 4.10263 4.22198 4.30452 4.39704 4.51259 4.51477 4.61963 4.69138 4.82328 4.92370 5.00474 5.02583 5.13780 5.24010 5.25659 5.32126 5.37802 5.45955 5.58509 5.70452 5.80204 5.91722 6.02098 6.41011 6.43161 6.67118 7.34414 7.61167 8.82793 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.004430 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.059395 B = 6319.399949 C = 6734.117859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.071 3.929 3 H 0.059 0.941 4 C -0.043 4.043 5 C -0.119 4.119 6 C -0.062 4.062 7 C -0.049 4.049 8 C 0.284 3.716 9 N -0.468 5.468 10 C -0.069 4.069 11 C -0.104 4.104 12 N -0.459 5.459 13 C -0.004 4.004 14 C 0.216 3.784 15 O -0.584 6.584 16 C -0.557 4.557 17 H 0.067 0.933 18 C 0.028 3.972 19 N -0.920 5.920 20 Si 0.964 3.036 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.268 1.268 24 C 0.019 3.981 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.143 0.857 31 H 0.130 0.870 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.383 0.617 35 H 0.273 0.727 36 H 0.079 0.921 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.440 2.716 -10.444 13.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.038 4.038 3 H 0.077 0.923 4 C -0.044 4.044 5 C -0.137 4.137 6 C -0.082 4.082 7 C -0.053 4.053 8 C -0.030 4.030 9 N -0.144 5.144 10 C -0.090 4.090 11 C -0.122 4.122 12 N -0.182 5.182 13 C -0.133 4.133 14 C 0.175 3.825 15 O -0.395 6.395 16 C -0.595 4.595 17 H 0.085 0.915 18 C -0.172 4.172 19 N -0.561 5.561 20 Si 0.790 3.210 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.193 1.193 24 C -0.110 4.110 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.169 0.831 29 H 0.172 0.828 30 H 0.161 0.839 31 H 0.148 0.852 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.237 0.763 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.543 1.055 -12.128 14.321 hybrid contribution 1.391 1.434 1.159 2.310 sum -6.152 2.489 -10.969 12.820 Atomic orbital electron populations 1.21761 0.91663 1.02832 1.02732 1.21371 0.97381 0.95615 0.89386 0.92330 1.20135 0.95531 0.94215 0.94558 1.21183 0.99108 1.01285 0.92134 1.21309 0.96343 0.91652 0.98912 1.16045 1.06639 0.93256 0.89314 1.25876 0.92217 0.92433 0.92515 1.81247 1.11183 1.09697 1.12241 1.21299 0.95729 1.00764 0.91168 1.21017 0.99254 0.94297 0.97629 1.68923 1.05127 1.43538 1.00596 1.24365 0.90881 0.97849 1.00225 1.19762 0.92204 0.82683 0.87877 1.86011 1.38247 1.39474 1.75800 1.21862 1.01657 0.99523 1.36475 0.91497 1.25781 0.97126 0.98498 0.95775 1.69373 1.14497 1.26085 1.46154 0.85510 0.77323 0.79295 0.78916 1.19740 1.20898 1.19335 1.23894 0.98246 0.97203 0.91638 0.92104 0.92221 0.90085 0.83113 0.82790 0.83919 0.85215 0.93609 0.92351 0.76295 0.91712 0.90325 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.15 71.98 0.66 -2.30 16 2 C 0.07 1.95 1.88 44.17 0.08 2.03 16 3 H 0.06 1.59 7.41 -2.39 -0.02 1.58 16 4 C -0.04 -1.06 4.68 -19.81 -0.09 -1.15 16 5 C -0.12 -2.34 9.65 22.23 0.21 -2.12 16 6 C -0.06 -1.12 9.76 22.54 0.22 -0.90 16 7 C -0.05 -1.02 5.73 -21.36 -0.12 -1.15 16 8 C 0.28 6.71 15.33 88.33 1.35 8.06 16 9 N -0.47 -13.09 18.54 19.00 0.35 -12.74 16 10 C -0.07 -1.50 9.76 22.54 0.22 -1.28 16 11 C -0.10 -2.60 9.30 22.23 0.21 -2.39 16 12 N -0.46 -16.58 5.36 -907.24 -4.86 -21.45 16 13 C 0.00 -0.15 6.86 83.57 0.57 0.42 16 14 C 0.22 10.40 1.57 -11.20 -0.02 10.38 16 15 O -0.58 -31.01 13.54 -148.98 -2.02 -33.03 16 16 C -0.56 -28.47 8.68 25.60 0.22 -28.25 16 17 H 0.07 3.30 7.81 -2.91 -0.02 3.28 16 18 C 0.03 1.42 5.40 84.65 0.46 1.87 16 19 N -0.92 -48.54 11.02 21.45 0.24 -48.31 16 20 Si 0.96 40.24 29.54 68.60 2.03 42.26 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 22 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 24 C 0.02 0.74 5.98 83.57 0.50 1.24 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.35 7.34 -2.39 -0.02 1.34 16 27 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.15 2.31 8.03 -2.91 -0.02 2.29 16 29 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 30 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.13 3.59 7.70 -2.91 -0.02 3.57 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.06 2.46 7.57 -2.39 -0.02 2.44 16 34 H 0.38 21.07 6.34 -74.06 -0.47 20.60 16 35 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 36 H 0.08 2.82 7.79 -2.39 -0.02 2.80 16 37 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 Total: -1.00 -58.14 320.03 0.83 -57.31 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.62 Total: 31.48 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 4.48 Total: -15.54 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -4.27 Total: -82.49 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -2.02 Total: -33.03 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.26 kcal Total: -58.14 0.83 -57.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617443500.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.760 kcal (2) G-P(sol) polarization free energy of solvation -58.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds