Wall clock time and date at job start Mon Mar 30 2020 01:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47264 * 2 1 4 4 C 1.47202 * 109.47417 * 119.99968 * 2 1 3 5 5 N 2.60800 * 109.47165 * 119.99991 * 2 1 3 6 6 C 1.53000 * 109.46948 * 240.00340 * 2 1 3 7 7 N 1.46497 * 109.47364 * 64.99775 * 6 2 1 8 8 C 1.34779 * 119.99719 * 179.97438 * 7 6 2 9 9 O 1.21279 * 120.00262 * 0.02562 * 8 7 6 10 10 C 1.50704 * 119.99436 * 180.02562 * 8 7 6 11 11 H 1.09002 * 109.47422 * 299.99642 * 10 8 7 12 12 C 1.50693 * 109.47439 * 60.00382 * 10 8 7 13 13 H 1.08000 * 120.00340 * 26.76476 * 12 10 8 14 14 C 1.37881 * 119.99815 * 206.77375 * 12 10 8 15 15 N 1.31511 * 120.00067 * 353.45428 * 14 12 10 16 16 Si 1.86804 * 119.99818 * 173.45980 * 14 12 10 17 17 H 1.48505 * 109.47005 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.47038 * 299.99602 * 16 14 12 19 19 H 1.48498 * 109.47233 * 59.99667 * 16 14 12 20 20 C 1.50706 * 109.46760 * 180.02562 * 10 8 7 21 21 C 1.38245 * 119.99323 * 292.96581 * 20 10 8 22 22 C 1.38237 * 119.99094 * 179.78969 * 21 20 10 23 23 C 1.38235 * 120.00776 * 0.44132 * 22 21 20 24 24 C 1.38233 * 119.99369 * 359.81414 * 23 22 21 25 25 C 1.38230 * 120.00270 * 113.23960 * 20 10 8 26 26 H 1.09005 * 109.47328 * 59.99570 * 1 2 3 27 27 H 1.09000 * 109.47264 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47185 * 300.00095 * 1 2 3 29 29 H 1.08999 * 109.47292 * 304.99542 * 6 2 1 30 30 H 1.09002 * 109.46697 * 185.00135 * 6 2 1 31 31 H 0.96998 * 119.99820 * 0.02562 * 7 6 2 32 32 H 0.97003 * 120.00089 * 354.55726 * 15 14 12 33 33 H 1.07993 * 119.99971 * 0.02562 * 21 20 10 34 34 H 1.08007 * 119.99517 * 180.27674 * 22 21 20 35 35 H 1.07995 * 120.00434 * 179.83260 * 23 22 21 36 36 H 1.08007 * 119.99900 * 180.02562 * 24 23 22 37 37 H 1.07998 * 119.99906 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3993 -1.2294 2.1294 6 6 2.0399 -0.7212 -1.2493 7 7 1.6523 0.0354 -2.4424 8 6 1.9963 -0.4131 -3.6659 9 8 2.6264 -1.4432 -3.7793 10 6 1.5981 0.3656 -4.8932 11 1 0.5118 0.4439 -4.9373 12 6 2.1990 1.7461 -4.8293 13 1 3.1093 1.9136 -4.2727 14 6 1.5866 2.7954 -5.4812 15 7 0.5532 2.5706 -6.2629 16 14 2.2249 4.5362 -5.2542 17 1 1.4002 5.4745 -6.0572 18 1 2.1447 4.9096 -3.8191 19 1 3.6376 4.6084 -5.7062 20 6 2.1003 -0.3449 -6.1237 21 6 3.4588 -0.4349 -6.3637 22 6 3.9196 -1.0904 -7.4901 23 6 3.0219 -1.6479 -8.3813 24 6 1.6634 -1.5532 -8.1440 25 6 1.2025 -0.9015 -7.0153 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.6054 -1.7197 -1.2952 30 1 3.1262 -0.7994 -1.2056 31 1 1.1488 0.8595 -2.3517 32 1 0.2706 1.6605 -6.4436 33 1 4.1600 0.0035 -5.6691 34 1 4.9811 -1.1647 -7.6753 35 1 3.3818 -2.1576 -9.2628 36 1 0.9619 -1.9891 -8.8401 37 1 0.1412 -0.8276 -6.8299 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617708986.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:09 Heat of formation + Delta-G solvation = -21.704259 kcal Electronic energy + Delta-G solvation = -20216.934955 eV Core-core repulsion = 17150.717066 eV Total energy + Delta-G solvation = -3066.217890 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.00502 -39.56356 -38.42041 -36.30973 -35.80134 -33.30452 -32.56695 -31.60649 -29.21817 -27.36151 -25.57705 -24.10105 -23.23075 -22.34296 -21.28734 -19.34581 -18.38973 -17.79234 -17.27989 -16.80333 -16.55348 -15.93771 -15.64283 -15.55468 -15.21160 -14.92038 -14.54413 -14.20124 -14.11745 -14.01846 -13.80824 -13.77175 -13.43150 -13.19624 -12.77352 -12.67037 -12.51879 -12.24635 -11.98262 -11.91487 -11.87671 -11.75430 -10.83975 -10.60352 -10.51230 -9.95669 -9.62512 -9.30379 -8.53672 -6.31723 0.68450 0.73895 1.57371 1.64132 1.68992 1.69649 1.88113 1.90172 2.36520 2.64275 3.02159 3.17071 3.27789 3.68016 3.90120 4.14330 4.21211 4.24457 4.33683 4.42733 4.43870 4.65901 4.73521 4.74890 4.87360 4.91645 4.94982 5.04144 5.29580 5.31978 5.35873 5.59091 5.72411 5.75812 5.80130 6.10267 6.22517 6.34804 6.45415 6.61208 6.74308 7.46296 7.49568 8.84146 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013914 B = 0.006128 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.941514 B = 4568.222688 C = 5911.860857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.007 3.993 3 H 0.150 0.850 4 C 0.243 3.757 5 N -0.481 5.481 6 C 0.130 3.870 7 N -0.710 5.710 8 C 0.533 3.467 9 O -0.591 6.591 10 C 0.043 3.957 11 H 0.053 0.947 12 C -0.587 4.587 13 H 0.052 0.948 14 C -0.007 4.007 15 N -0.923 5.923 16 Si 1.105 2.895 17 H -0.291 1.291 18 H -0.256 1.256 19 H -0.285 1.285 20 C -0.047 4.047 21 C -0.107 4.107 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.128 4.128 25 C -0.149 4.149 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.417 0.583 32 H 0.266 0.734 33 H 0.095 0.905 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.080 -1.798 4.767 5.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.014 4.014 3 H 0.167 0.833 4 C -0.074 4.074 5 N -0.157 5.157 6 C 0.005 3.995 7 N -0.363 5.363 8 C 0.322 3.678 9 O -0.472 6.472 10 C 0.022 3.978 11 H 0.071 0.929 12 C -0.624 4.624 13 H 0.070 0.930 14 C -0.208 4.208 15 N -0.558 5.558 16 Si 0.928 3.072 17 H -0.217 1.217 18 H -0.181 1.181 19 H -0.211 1.211 20 C -0.048 4.048 21 C -0.126 4.126 22 C -0.154 4.154 23 C -0.161 4.161 24 C -0.146 4.146 25 C -0.167 4.167 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.254 0.746 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.153 0.847 35 H 0.165 0.835 36 H 0.159 0.841 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.379 -1.762 5.741 6.018 hybrid contribution 0.034 -1.133 -0.023 1.134 sum -0.345 -2.895 5.719 6.419 Atomic orbital electron populations 1.21893 0.89861 1.03855 1.04846 1.19093 0.98710 1.00165 0.83454 0.83258 1.29158 0.91860 0.92430 0.93999 1.81244 1.10479 1.10706 1.13320 1.21160 0.99960 0.95352 0.83058 1.45637 1.58242 1.28185 1.04266 1.21027 0.77318 0.83673 0.85790 1.90584 1.42324 1.26604 1.87724 1.18109 0.97795 0.94459 0.87449 0.92878 1.21658 1.12753 0.91659 1.36363 0.93018 1.26935 0.94027 1.07734 0.92147 1.70867 1.26026 1.24391 1.34491 0.83070 0.75078 0.71232 0.77822 1.21711 1.18079 1.21139 1.20239 0.93905 0.93729 0.96965 1.20843 0.95328 0.98946 0.97446 1.21355 1.00490 0.98815 0.94743 1.21299 0.93095 1.01414 1.00256 1.21322 0.96526 0.99555 0.97201 1.21182 0.99051 1.00069 0.96423 0.89512 0.91826 0.89605 0.91539 0.92206 0.74558 0.92325 0.88673 0.84745 0.83543 0.84096 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.02 71.98 0.65 -1.33 16 2 C 0.01 0.12 2.80 -12.60 -0.04 0.09 16 3 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 4 C 0.24 5.27 14.65 89.44 1.31 6.58 16 5 N -0.48 -13.31 18.54 20.01 0.37 -12.94 16 6 C 0.13 3.20 5.02 86.38 0.43 3.63 16 7 N -0.71 -21.64 5.18 -463.06 -2.40 -24.04 16 8 C 0.53 22.02 7.04 87.66 0.62 22.63 16 9 O -0.59 -27.74 15.46 -3.03 -0.05 -27.78 16 10 C 0.04 1.96 1.92 -13.03 -0.03 1.93 16 11 H 0.05 2.50 6.82 -2.39 -0.02 2.48 16 12 C -0.59 -28.05 7.42 25.60 0.19 -27.86 16 13 H 0.05 2.49 7.82 -2.91 -0.02 2.47 16 14 C -0.01 -0.33 5.45 84.66 0.46 0.13 16 15 N -0.92 -49.49 13.56 21.45 0.29 -49.20 16 16 Si 1.11 44.12 29.91 68.60 2.05 46.17 16 17 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 19 H -0.29 -11.23 7.11 99.48 0.71 -10.53 16 20 C -0.05 -2.18 4.03 -19.86 -0.08 -2.26 16 21 C -0.11 -4.80 8.36 22.27 0.19 -4.62 16 22 C -0.14 -5.12 10.05 22.27 0.22 -4.90 16 23 C -0.14 -4.83 10.05 22.27 0.22 -4.61 16 24 C -0.13 -4.58 10.05 22.27 0.22 -4.35 16 25 C -0.15 -6.25 9.25 22.27 0.21 -6.05 16 26 H 0.09 1.17 7.18 -2.38 -0.02 1.15 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.42 11.13 7.54 -92.71 -0.70 10.43 16 32 H 0.27 14.34 6.30 -92.71 -0.58 13.76 16 33 H 0.10 4.44 7.86 -2.91 -0.02 4.41 16 34 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 35 H 0.15 3.77 8.06 -2.91 -0.02 3.74 16 36 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 37 H 0.11 4.45 7.96 -2.91 -0.02 4.43 16 Total: -1.00 -66.43 325.43 5.42 -61.01 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.57 Total: 27.75 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 4.58 Total: -20.97 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -1.74 Total: -86.18 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.05 Total: -27.78 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.05 Total: 46.17 kcal Total: -66.43 5.42 -61.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617708986.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.305 kcal (2) G-P(sol) polarization free energy of solvation -66.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds