Wall clock time and date at job start Mon Mar 30 2020 01:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46899 * 2 1 4 4 C 1.47195 * 109.47351 * 239.99568 * 2 1 3 5 5 N 2.60791 * 109.47327 * 239.99773 * 2 1 3 6 6 C 1.53005 * 109.47106 * 119.99426 * 2 1 3 7 7 N 1.46506 * 109.47004 * 295.00267 * 6 2 1 8 8 C 1.34777 * 119.99848 * 179.97438 * 7 6 2 9 9 O 1.21285 * 119.99724 * 359.97438 * 8 7 6 10 10 C 1.50693 * 120.00295 * 180.02562 * 8 7 6 11 11 H 1.08999 * 109.47004 * 300.00020 * 10 8 7 12 12 C 1.50699 * 109.47081 * 59.99512 * 10 8 7 13 13 H 1.07998 * 120.00567 * 235.34798 * 12 10 8 14 14 C 1.37882 * 119.99625 * 55.35003 * 12 10 8 15 15 N 1.31511 * 120.00426 * 1.97090 * 14 12 10 16 16 Si 1.86801 * 119.99783 * 181.97621 * 14 12 10 17 17 H 1.48504 * 109.47226 * 89.99912 * 16 14 12 18 18 H 1.48502 * 109.47051 * 209.99669 * 16 14 12 19 19 H 1.48507 * 109.47232 * 329.99969 * 16 14 12 20 20 C 1.50698 * 109.47478 * 179.97438 * 10 8 7 21 21 C 1.38234 * 119.99959 * 226.94687 * 20 10 8 22 22 C 1.38234 * 119.99754 * 179.79053 * 21 20 10 23 23 C 1.38240 * 119.99922 * 0.43213 * 22 21 20 24 24 C 1.38230 * 120.00171 * 359.82219 * 23 22 21 25 25 C 1.38235 * 119.99712 * 47.21708 * 20 10 8 26 26 H 1.09001 * 109.47258 * 300.00340 * 1 2 3 27 27 H 1.09002 * 109.46885 * 60.00368 * 1 2 3 28 28 H 1.09001 * 109.46820 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46831 * 54.99779 * 6 2 1 30 30 H 1.08997 * 109.46914 * 175.00088 * 6 2 1 31 31 H 0.96996 * 119.99720 * 359.97438 * 7 6 2 32 32 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 33 33 H 1.07997 * 119.99904 * 359.97438 * 21 20 10 34 34 H 1.07997 * 120.00455 * 180.27470 * 22 21 20 35 35 H 1.07996 * 119.99725 * 179.83250 * 23 22 21 36 36 H 1.08005 * 120.00352 * 179.97438 * 24 23 22 37 37 H 1.08002 * 120.00224 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3994 -1.2294 -2.1293 6 6 2.0400 -0.7211 1.2494 7 7 1.6524 0.0356 2.4424 8 6 1.9955 -0.4133 3.6661 9 8 2.6248 -1.4439 3.7795 10 6 1.5963 0.3647 4.8934 11 1 2.0309 1.3633 4.8478 12 6 0.0944 0.4728 4.9531 13 1 -0.3749 1.4431 5.0221 14 6 -0.6806 -0.6670 4.9198 15 7 -0.1084 -1.8503 4.8750 16 14 -2.5436 -0.5306 4.9381 17 1 -3.0475 -0.4466 3.5437 18 1 -3.1210 -1.7270 5.6018 19 1 -2.9432 0.6902 5.6833 20 6 2.0977 -0.3461 6.1239 21 6 1.2542 -0.5404 7.2018 22 6 1.7128 -1.1963 8.3288 23 6 3.0176 -1.6500 8.3816 24 6 3.8626 -1.4511 7.3059 25 6 3.4027 -0.7990 6.1771 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -1.7196 1.2953 30 1 3.1263 -0.7993 1.2057 31 1 1.1488 0.8596 2.3517 32 1 -0.6536 -2.6522 4.8519 33 1 0.2361 -0.1824 7.1621 34 1 1.0526 -1.3521 9.1692 35 1 3.3766 -2.1601 9.2632 36 1 4.8821 -1.8052 7.3472 37 1 4.0628 -0.6437 5.3365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617708994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:17 Heat of formation + Delta-G solvation = 7.129055 kcal Electronic energy + Delta-G solvation = -20669.785866 eV Core-core repulsion = 17604.818283 eV Total energy + Delta-G solvation = -3064.967584 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.09034 -37.86230 -36.94621 -34.84616 -33.63402 -31.74224 -30.82519 -29.67137 -27.59770 -26.14059 -24.02869 -22.69789 -21.26075 -20.47618 -19.42748 -17.47693 -16.62760 -16.12101 -15.37433 -15.11234 -14.90887 -14.75052 -14.02444 -13.70628 -13.61719 -13.44916 -12.97540 -12.79584 -12.51838 -12.40415 -12.19770 -12.01798 -11.84397 -11.64153 -11.30195 -11.09297 -11.00035 -10.92652 -10.77910 -10.46244 -10.05152 -9.68948 -9.39805 -8.75276 -8.35752 -8.09590 -7.69013 -7.40180 -6.16459 -4.33396 2.54167 2.61471 2.71800 2.76328 3.15981 3.27205 3.27664 3.74099 4.11828 4.27975 4.49378 4.83122 4.94721 5.02823 5.11140 5.14117 5.71784 5.79700 5.86184 5.95670 5.99260 6.05991 6.13131 6.24104 6.38475 6.54464 6.67764 6.79529 6.88905 7.13134 7.21450 7.39408 7.53606 7.55848 7.64184 7.66199 7.77872 8.15861 8.26621 8.54592 8.75792 9.33554 9.63782 10.83708 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016951 B = 0.006630 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.466919 B = 4222.102453 C = 5490.839247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.006 4.006 3 H 0.119 0.881 4 C 0.221 3.779 5 N -0.441 5.441 6 C 0.135 3.865 7 N -0.735 5.735 8 C 0.551 3.449 9 O -0.545 6.545 10 C 0.057 3.943 11 H 0.058 0.942 12 C -0.541 4.541 13 H 0.067 0.933 14 C 0.075 3.925 15 N -0.840 5.840 16 Si 0.885 3.115 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.272 1.272 20 C -0.014 4.014 21 C -0.065 4.065 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.101 4.101 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.398 0.602 32 H 0.265 0.735 33 H 0.128 0.872 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.975 6.216 -2.247 6.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 H 0.136 0.864 4 C -0.098 4.098 5 N -0.117 5.117 6 C 0.009 3.991 7 N -0.390 5.390 8 C 0.340 3.660 9 O -0.420 6.420 10 C 0.036 3.964 11 H 0.076 0.924 12 C -0.579 4.579 13 H 0.086 0.914 14 C -0.133 4.133 15 N -0.473 5.473 16 Si 0.712 3.288 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.015 4.015 21 C -0.083 4.083 22 C -0.166 4.166 23 C -0.163 4.163 24 C -0.163 4.163 25 C -0.119 4.119 26 H 0.105 0.895 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.232 0.768 32 H 0.075 0.925 33 H 0.146 0.854 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.986 4.409 -3.563 6.006 hybrid contribution -1.585 0.153 0.221 1.608 sum 0.401 4.562 -3.342 5.669 Atomic orbital electron populations 1.21851 0.91358 1.03808 1.03472 1.19106 0.97774 0.99357 0.86566 0.86376 1.29020 0.92999 0.93476 0.94284 1.81189 1.09197 1.09356 1.11950 1.20967 0.99472 0.95815 0.82819 1.45741 1.60425 1.27971 1.04825 1.21057 0.75671 0.85315 0.83913 1.90558 1.40769 1.24460 1.86253 1.17874 0.97469 0.93545 0.87509 0.92405 1.20692 0.88425 0.93332 1.55419 0.91440 1.25052 0.98433 0.95464 0.94379 1.70066 1.35153 0.97303 1.44764 0.86701 0.85837 0.77882 0.78379 1.20466 1.21232 1.19638 1.19805 0.91425 0.95498 0.94809 1.21140 0.99721 0.95876 0.91567 1.20992 0.95491 1.01512 0.98618 1.20772 0.94723 1.02600 0.98207 1.20824 0.98709 1.02034 0.94691 1.20976 0.96334 0.98406 0.96169 0.89520 0.91974 0.91598 0.91372 0.91928 0.76794 0.92469 0.85445 0.88077 0.88256 0.88140 0.87496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.02 37.16 0.34 -1.19 16 2 C -0.01 -0.07 2.80 -93.40 -0.26 -0.33 16 3 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 4 C 0.22 2.86 14.64 -20.76 -0.30 2.55 16 5 N -0.44 -6.82 18.54 42.15 0.78 -6.04 16 6 C 0.14 2.00 5.02 -4.04 -0.02 1.98 16 7 N -0.74 -12.40 5.18 -60.29 -0.31 -12.71 16 8 C 0.55 11.93 5.45 -10.99 -0.06 11.87 16 9 O -0.54 -13.71 13.95 5.55 0.08 -13.63 16 10 C 0.06 1.25 2.78 -94.08 -0.26 0.99 16 11 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 12 C -0.54 -12.18 7.11 -34.44 -0.24 -12.43 16 13 H 0.07 1.47 7.81 -52.49 -0.41 1.06 16 14 C 0.07 1.77 4.00 -17.82 -0.07 1.70 16 15 N -0.84 -21.79 10.89 55.43 0.60 -21.19 16 16 Si 0.88 18.67 29.54 -169.99 -5.02 13.65 16 17 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 18 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 C -0.01 -0.33 4.51 -104.63 -0.47 -0.80 16 21 C -0.07 -1.47 8.20 -39.58 -0.32 -1.79 16 22 C -0.15 -3.02 10.05 -39.58 -0.40 -3.42 16 23 C -0.14 -2.81 10.05 -39.58 -0.40 -3.21 16 24 C -0.14 -2.90 10.05 -39.58 -0.40 -3.30 16 25 C -0.10 -2.21 8.21 -39.58 -0.33 -2.53 16 26 H 0.09 0.93 7.18 -51.93 -0.37 0.56 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.40 5.72 7.54 -40.82 -0.31 5.41 16 32 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.13 2.96 6.04 -52.49 -0.32 2.64 16 34 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 37 H 0.11 2.31 7.01 -52.49 -0.37 1.94 16 LS Contribution 318.25 15.07 4.80 4.80 Total: -1.00 -29.58 318.25 -6.99 -36.57 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -4.72 Total: 8.46 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -3.20 Total: -9.91 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 1.07 Total: -39.94 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.08 Total: -13.63 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.58 -6.99 -36.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617708994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.700 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds