Wall clock time and date at job start Mon Mar 30 2020 01:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46899 * 2 1 4 4 C 1.47195 * 109.47351 * 239.99568 * 2 1 3 5 5 N 2.60791 * 109.47327 * 239.99773 * 2 1 3 6 6 C 1.53005 * 109.47106 * 119.99426 * 2 1 3 7 7 N 1.46506 * 109.47004 * 295.00267 * 6 2 1 8 8 C 1.34777 * 119.99848 * 179.97438 * 7 6 2 9 9 O 1.21285 * 119.99724 * 359.97438 * 8 7 6 10 10 C 1.50693 * 120.00295 * 180.02562 * 8 7 6 11 11 H 1.08999 * 109.47004 * 300.00020 * 10 8 7 12 12 C 1.50699 * 109.47081 * 59.99512 * 10 8 7 13 13 H 1.07998 * 120.00567 * 235.34798 * 12 10 8 14 14 C 1.37882 * 119.99625 * 55.35003 * 12 10 8 15 15 N 1.31511 * 120.00426 * 1.97090 * 14 12 10 16 16 Si 1.86801 * 119.99783 * 181.97621 * 14 12 10 17 17 H 1.48504 * 109.47226 * 89.99912 * 16 14 12 18 18 H 1.48502 * 109.47051 * 209.99669 * 16 14 12 19 19 H 1.48507 * 109.47232 * 329.99969 * 16 14 12 20 20 C 1.50698 * 109.47478 * 179.97438 * 10 8 7 21 21 C 1.38234 * 119.99959 * 226.94687 * 20 10 8 22 22 C 1.38234 * 119.99754 * 179.79053 * 21 20 10 23 23 C 1.38240 * 119.99922 * 0.43213 * 22 21 20 24 24 C 1.38230 * 120.00171 * 359.82219 * 23 22 21 25 25 C 1.38235 * 119.99712 * 47.21708 * 20 10 8 26 26 H 1.09001 * 109.47258 * 300.00340 * 1 2 3 27 27 H 1.09002 * 109.46885 * 60.00368 * 1 2 3 28 28 H 1.09001 * 109.46820 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46831 * 54.99779 * 6 2 1 30 30 H 1.08997 * 109.46914 * 175.00088 * 6 2 1 31 31 H 0.96996 * 119.99720 * 359.97438 * 7 6 2 32 32 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 33 33 H 1.07997 * 119.99904 * 359.97438 * 21 20 10 34 34 H 1.07997 * 120.00455 * 180.27470 * 22 21 20 35 35 H 1.07996 * 119.99725 * 179.83250 * 23 22 21 36 36 H 1.08005 * 120.00352 * 179.97438 * 24 23 22 37 37 H 1.08002 * 120.00224 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3994 -1.2294 -2.1293 6 6 2.0400 -0.7211 1.2494 7 7 1.6524 0.0356 2.4424 8 6 1.9955 -0.4133 3.6661 9 8 2.6248 -1.4439 3.7795 10 6 1.5963 0.3647 4.8934 11 1 2.0309 1.3633 4.8478 12 6 0.0944 0.4728 4.9531 13 1 -0.3749 1.4431 5.0221 14 6 -0.6806 -0.6670 4.9198 15 7 -0.1084 -1.8503 4.8750 16 14 -2.5436 -0.5306 4.9381 17 1 -3.0475 -0.4466 3.5437 18 1 -3.1210 -1.7270 5.6018 19 1 -2.9432 0.6902 5.6833 20 6 2.0977 -0.3461 6.1239 21 6 1.2542 -0.5404 7.2018 22 6 1.7128 -1.1963 8.3288 23 6 3.0176 -1.6500 8.3816 24 6 3.8626 -1.4511 7.3059 25 6 3.4027 -0.7990 6.1771 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -1.7196 1.2953 30 1 3.1263 -0.7993 1.2057 31 1 1.1488 0.8596 2.3517 32 1 -0.6536 -2.6522 4.8519 33 1 0.2361 -0.1824 7.1621 34 1 1.0526 -1.3521 9.1692 35 1 3.3766 -2.1601 9.2632 36 1 4.8821 -1.8052 7.3472 37 1 4.0628 -0.6437 5.3365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617708994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:17 Heat of formation + Delta-G solvation = -9.902518 kcal Electronic energy + Delta-G solvation = -20670.524411 eV Core-core repulsion = 17604.818283 eV Total energy + Delta-G solvation = -3065.706128 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.69450 -39.28787 -38.26228 -36.13208 -35.39732 -33.07332 -32.52127 -31.29494 -29.16762 -27.36908 -25.68088 -23.93958 -22.89064 -22.03172 -21.00671 -18.89003 -18.05703 -17.56866 -16.94652 -16.68375 -16.39845 -16.16724 -15.51075 -15.28527 -15.09475 -14.70479 -14.26546 -14.12146 -13.97463 -13.86858 -13.67272 -13.56508 -13.27276 -12.95214 -12.71413 -12.59100 -12.47267 -12.21791 -12.13603 -11.91488 -11.70363 -11.34587 -11.09965 -10.56573 -10.09938 -9.59922 -9.32518 -9.03811 -7.98591 -6.18074 0.93234 0.98470 1.47908 1.54815 1.60360 1.62264 1.72127 2.40138 2.51049 2.66308 3.19114 3.28984 3.44988 3.79313 3.96907 4.27350 4.39085 4.40254 4.55225 4.68221 4.76031 4.76640 4.91794 4.95018 5.06966 5.07492 5.18554 5.25694 5.36693 5.51650 5.60626 5.79097 5.93775 5.97125 6.01923 6.06394 6.48666 6.49530 6.59416 6.85750 7.18918 7.51391 8.02525 8.99975 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016951 B = 0.006630 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.466919 B = 4222.102453 C = 5490.839247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.011 3.989 3 H 0.161 0.839 4 C 0.243 3.757 5 N -0.484 5.484 6 C 0.138 3.862 7 N -0.720 5.720 8 C 0.549 3.451 9 O -0.586 6.586 10 C 0.047 3.953 11 H 0.075 0.925 12 C -0.529 4.529 13 H 0.076 0.924 14 C 0.042 3.958 15 N -0.874 5.874 16 Si 0.936 3.064 17 H -0.271 1.271 18 H -0.304 1.304 19 H -0.263 1.263 20 C -0.034 4.034 21 C -0.087 4.087 22 C -0.154 4.154 23 C -0.144 4.144 24 C -0.149 4.149 25 C -0.118 4.118 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.412 0.588 32 H 0.253 0.747 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.705 7.625 -2.109 7.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.010 4.010 3 H 0.178 0.822 4 C -0.075 4.075 5 N -0.161 5.161 6 C 0.012 3.988 7 N -0.374 5.374 8 C 0.338 3.662 9 O -0.465 6.465 10 C 0.026 3.974 11 H 0.093 0.907 12 C -0.567 4.567 13 H 0.094 0.906 14 C -0.162 4.162 15 N -0.509 5.509 16 Si 0.763 3.237 17 H -0.197 1.197 18 H -0.231 1.231 19 H -0.188 1.188 20 C -0.035 4.035 21 C -0.105 4.105 22 C -0.172 4.172 23 C -0.162 4.162 24 C -0.166 4.166 25 C -0.136 4.136 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.249 0.751 32 H 0.063 0.937 33 H 0.132 0.868 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.693 5.880 -3.455 7.027 hybrid contribution -1.462 -0.256 0.233 1.503 sum 0.230 5.624 -3.222 6.486 Atomic orbital electron populations 1.21863 0.90672 1.03078 1.04770 1.19113 0.98034 1.00459 0.83391 0.82186 1.29273 0.91780 0.92405 0.93996 1.81218 1.10679 1.10648 1.13549 1.20937 0.99294 0.94802 0.83762 1.45514 1.59393 1.28230 1.04228 1.21027 0.75337 0.84698 0.85124 1.90529 1.42802 1.26177 1.87028 1.18019 0.97264 0.94464 0.87697 0.90686 1.20905 0.88907 0.93326 1.53521 0.90571 1.25540 1.01300 0.95111 0.94284 1.70239 1.35818 0.97646 1.47178 0.85894 0.82202 0.77161 0.78468 1.19673 1.23088 1.18762 1.19981 0.92017 0.96294 0.95233 1.21143 0.99221 0.97420 0.92721 1.21311 0.96530 1.00699 0.98646 1.21154 0.94085 1.01841 0.99126 1.21189 1.00184 1.01097 0.94180 1.21061 0.96207 0.99461 0.96906 0.89488 0.89356 0.93416 0.94326 0.92143 0.75111 0.93728 0.86840 0.85809 0.84770 0.85531 0.88058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.02 71.98 0.65 -2.04 16 2 C 0.01 0.22 2.80 -12.60 -0.04 0.18 16 3 H 0.16 1.86 8.14 -2.39 -0.02 1.84 16 4 C 0.24 5.93 14.64 89.44 1.31 7.24 16 5 N -0.48 -14.61 18.54 20.00 0.37 -14.24 16 6 C 0.14 3.99 5.02 86.38 0.43 4.42 16 7 N -0.72 -23.57 5.18 -463.05 -2.40 -25.97 16 8 C 0.55 23.78 5.45 87.65 0.48 24.26 16 9 O -0.59 -30.10 13.95 -3.04 -0.04 -30.14 16 10 C 0.05 2.02 2.78 -13.04 -0.04 1.99 16 11 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 12 C -0.53 -23.39 7.11 25.60 0.18 -23.21 16 13 H 0.08 3.19 7.81 -2.91 -0.02 3.16 16 14 C 0.04 1.98 4.00 84.66 0.34 2.32 16 15 N -0.87 -46.05 10.89 21.45 0.23 -45.82 16 16 Si 0.94 37.99 29.54 68.60 2.03 40.02 16 17 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 18 H -0.30 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 20 C -0.03 -1.57 4.51 -19.87 -0.09 -1.66 16 21 C -0.09 -3.92 8.20 22.27 0.18 -3.74 16 22 C -0.15 -6.10 10.05 22.27 0.22 -5.88 16 23 C -0.14 -5.30 10.05 22.27 0.22 -5.07 16 24 C -0.15 -5.76 10.05 22.27 0.22 -5.54 16 25 C -0.12 -5.18 8.21 22.27 0.18 -5.00 16 26 H 0.09 1.64 7.18 -2.39 -0.02 1.62 16 27 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.41 10.97 7.54 -92.71 -0.70 10.27 16 32 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 33 H 0.11 5.31 6.04 -2.91 -0.02 5.29 16 34 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 35 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 36 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 37 H 0.10 4.45 7.01 -2.91 -0.02 4.43 16 Total: -1.00 -64.81 318.25 4.84 -59.97 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.39 Total: 27.91 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 4.27 Total: -11.73 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -1.80 Total: -86.02 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.04 Total: -30.14 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -64.81 4.84 -59.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617708994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.068 kcal (2) G-P(sol) polarization free energy of solvation -64.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds