Wall clock time and date at job start Mon Mar 30 2020 01:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39638 * 120.49250 * 318.21078 * 3 2 1 5 5 N 1.31758 * 120.88469 * 180.02562 * 4 3 2 6 6 C 1.31726 * 122.03681 * 359.97438 * 5 4 3 7 7 C 1.39599 * 120.88226 * 0.02562 * 6 5 4 8 8 C 1.47856 * 120.49124 * 179.97438 * 7 6 5 9 9 O 1.21552 * 120.00388 * 137.88559 * 8 7 6 10 10 N 1.34773 * 120.00166 * 317.87910 * 8 7 6 11 11 C 1.46501 * 120.00444 * 211.55530 * 10 8 7 12 12 C 1.50690 * 109.46994 * 90.00142 * 11 10 8 13 13 H 1.08000 * 120.00569 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99832 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00019 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99963 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47243 * 59.99910 * 16 14 12 18 18 H 1.48501 * 109.47034 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46863 * 299.99850 * 16 14 12 20 20 C 1.46499 * 119.99661 * 31.55835 * 10 8 7 21 21 C 1.53006 * 109.47016 * 302.11266 * 20 10 8 22 22 C 1.52995 * 109.47462 * 62.11132 * 20 10 8 23 23 C 1.39682 * 120.49109 * 138.18964 * 3 2 1 24 24 H 4.52736 * 13.92858 * 359.97438 * 4 2 1 25 25 H 1.07997 * 119.55436 * 359.97438 * 4 3 2 26 26 H 1.07999 * 119.55585 * 179.97438 * 6 5 4 27 27 H 1.09004 * 109.46662 * 210.00389 * 11 10 8 28 28 H 1.08998 * 109.47020 * 329.99975 * 11 10 8 29 29 H 0.97005 * 120.00106 * 180.02562 * 15 14 12 30 30 H 1.08998 * 109.47574 * 182.11584 * 20 10 8 31 31 H 1.09000 * 109.47160 * 13.59662 * 21 20 10 32 32 H 1.09000 * 109.47355 * 133.59746 * 21 20 10 33 33 H 1.09001 * 109.46797 * 253.59780 * 21 20 10 34 34 H 1.08998 * 109.47165 * 103.23068 * 22 20 10 35 35 H 1.09001 * 109.47244 * 223.22833 * 22 20 10 36 36 H 1.09003 * 109.47486 * 343.22826 * 22 20 10 37 37 H 1.07999 * 120.91636 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3149 -0.8962 0.8018 5 7 4.6325 -0.9020 0.8082 6 6 5.3385 -0.0727 0.0673 7 6 4.7111 0.8570 -0.7638 8 6 5.5120 1.7842 -1.5914 9 8 5.1854 2.0103 -2.7402 10 7 6.6042 2.3790 -1.0720 11 6 6.9937 3.7174 -1.5226 12 6 6.3269 4.7533 -0.6548 13 1 5.6782 4.4456 0.1520 14 6 6.5449 6.0942 -0.8909 15 7 7.3344 6.4690 -1.8736 16 14 5.7189 7.3784 0.1853 17 1 6.1426 7.1889 1.5959 18 1 6.1136 8.7352 -0.2715 19 1 4.2444 7.2320 0.0874 20 6 7.4021 1.6869 -0.0568 21 6 6.5150 1.3423 1.1413 22 6 7.9788 0.4004 -0.6510 23 6 3.3143 0.8981 -0.8024 24 1 -1.0500 -0.0002 0.0008 25 1 2.7760 -1.5938 1.4257 26 1 6.4171 -0.1120 0.1040 27 1 8.0760 3.8246 -1.4500 28 1 6.6835 3.8567 -2.5582 29 1 7.4881 7.4124 -2.0394 30 1 8.2167 2.3339 0.2685 31 1 5.4679 1.4692 0.8666 32 1 6.6901 0.3080 1.4376 33 1 6.7552 2.0042 1.9734 34 1 9.0333 0.5486 -0.8839 35 1 7.8765 -0.4106 0.0701 36 1 7.4376 0.1466 -1.5625 37 1 2.7971 1.6044 -1.4349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627170128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:02 Heat of formation + Delta-G solvation = 135.545782 kcal Electronic energy + Delta-G solvation = -20876.397619 eV Core-core repulsion = 17816.998603 eV Total energy + Delta-G solvation = -3059.399016 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.42087 -38.70447 -36.66828 -34.37237 -33.38913 -32.10690 -31.65754 -30.22057 -27.38251 -27.02103 -24.60005 -24.24223 -22.52260 -21.84941 -19.90135 -17.95277 -17.36652 -16.68291 -16.53086 -16.11186 -15.26556 -15.06514 -14.68382 -14.53174 -14.20525 -13.81223 -13.36609 -13.03180 -12.73073 -12.35400 -12.25147 -11.94671 -11.79647 -11.48340 -11.28106 -11.16112 -10.93631 -10.84247 -10.66836 -10.33710 -10.19730 -9.83384 -9.70602 -9.57868 -9.08617 -8.51560 -8.30552 -7.70558 -6.12226 -4.19049 0.66520 1.10234 2.60893 2.83218 3.20483 3.26156 3.31116 3.34316 3.70578 3.98282 4.11593 4.35772 4.37017 4.79063 4.83399 4.87255 4.95135 5.12806 5.21481 5.29494 5.41631 5.51659 5.62568 5.71686 5.80287 5.83774 6.06150 6.11339 6.13540 6.24597 6.41803 6.54475 7.00126 7.34132 7.40023 7.48653 7.82927 7.84652 8.13290 8.26528 8.66987 8.89365 9.46985 10.95018 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016710 B = 0.006211 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.251922 B = 4506.950185 C = 5352.045133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.138 4.138 3 C -0.071 4.071 4 C 0.141 3.859 5 N -0.508 5.508 6 C 0.134 3.866 7 C -0.196 4.196 8 C 0.575 3.425 9 O -0.525 6.525 10 N -0.604 5.604 11 C 0.248 3.752 12 C -0.537 4.537 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.891 5.891 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.276 1.276 20 C 0.134 3.866 21 C -0.207 4.207 22 C -0.186 4.186 23 C 0.000 4.000 24 H 0.225 0.775 25 H 0.159 0.841 26 H 0.208 0.792 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.265 0.735 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.745 -13.882 6.359 15.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.139 4.139 3 C -0.074 4.074 4 C -0.015 4.015 5 N -0.217 5.217 6 C -0.022 4.022 7 C -0.201 4.201 8 C 0.361 3.639 9 O -0.401 6.401 10 N -0.337 5.337 11 C 0.130 3.870 12 C -0.576 4.576 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.724 3.276 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.202 1.202 20 C 0.028 3.972 21 C -0.264 4.264 22 C -0.243 4.243 23 C -0.026 4.026 24 H 0.242 0.758 25 H 0.176 0.824 26 H 0.224 0.776 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.365 -14.144 6.151 16.030 hybrid contribution -1.192 1.612 0.210 2.016 sum -5.557 -12.533 6.361 15.113 Atomic orbital electron populations 1.24824 0.95649 0.99469 0.99639 1.19685 0.91526 1.01360 1.01280 1.16704 0.87914 1.00555 1.02202 1.22989 0.89983 0.94558 0.93987 1.67843 1.07416 1.23833 1.22558 1.25084 1.03968 0.86505 0.86608 1.21316 0.94961 1.01528 1.02338 1.17749 0.80866 0.79500 0.85753 1.90726 1.70773 1.62046 1.16584 1.48045 1.25693 1.19327 1.40626 1.19378 0.96062 0.74879 0.96696 1.21465 1.29279 0.90894 1.15943 0.92395 1.24929 0.95150 0.98415 0.95361 1.69921 1.36604 1.16808 1.29591 0.86577 0.79962 0.80428 0.80596 1.20152 1.21056 1.20198 1.21071 0.94415 0.93877 0.87791 1.23757 1.01928 1.01665 0.99064 1.22762 1.02927 0.96985 1.01626 1.21667 0.92357 0.94807 0.93734 0.75833 0.82376 0.77613 0.94660 0.93563 0.92512 0.87888 0.89523 0.90188 0.91551 0.90860 0.90870 0.91575 0.83842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 19.25 29.55 0.57 -1.32 16 2 C -0.14 -1.82 13.27 -38.84 -0.52 -2.34 16 3 C -0.07 -1.03 5.73 -106.91 -0.61 -1.64 16 4 C 0.14 1.84 10.91 -17.06 -0.19 1.65 16 5 N -0.51 -7.09 10.30 -17.17 -0.18 -7.26 16 6 C 0.13 1.97 5.87 -17.09 -0.10 1.87 16 7 C -0.20 -3.42 4.24 -104.87 -0.45 -3.87 16 8 C 0.57 12.13 5.91 -12.33 -0.07 12.06 16 9 O -0.53 -12.94 16.78 5.32 0.09 -12.86 16 10 N -0.60 -12.50 2.38 -168.58 -0.40 -12.91 16 11 C 0.25 6.29 5.31 -5.20 -0.03 6.26 16 12 C -0.54 -14.66 9.39 -34.44 -0.32 -14.99 16 13 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 16 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.13 2.10 3.27 -67.93 -0.22 1.88 16 21 C -0.21 -2.97 7.73 37.16 0.29 -2.68 16 22 C -0.19 -2.30 8.35 37.15 0.31 -1.99 16 23 C 0.00 0.00 9.54 -38.46 -0.37 -0.37 16 24 H 0.22 1.40 7.80 -54.09 -0.42 0.98 16 25 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 26 H 0.21 2.71 1.07 -53.78 -0.06 2.65 16 27 H 0.04 0.90 7.94 -51.93 -0.41 0.49 16 28 H 0.05 1.33 7.35 -51.93 -0.38 0.94 16 29 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.10 1.62 7.81 -51.93 -0.41 1.22 16 31 H 0.09 1.44 3.96 -62.05 -0.25 1.19 16 32 H 0.08 0.95 5.38 -51.93 -0.28 0.67 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.71 6.20 -51.93 -0.32 0.39 16 36 H 0.07 0.92 6.83 -51.93 -0.35 0.57 16 37 H 0.14 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 310.71 15.07 4.68 4.68 Total: -1.00 -32.09 310.71 -6.01 -38.10 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -4.12 Total: 2.79 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -1.80 Total: -3.80 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.16 Total: -45.22 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.09 -6.01 -38.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627170128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.646 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds