Wall clock time and date at job start Mon Mar 30 2020 01:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39638 * 120.49250 * 318.21078 * 3 2 1 5 5 N 1.31758 * 120.88469 * 180.02562 * 4 3 2 6 6 C 1.31726 * 122.03681 * 359.97438 * 5 4 3 7 7 C 1.39599 * 120.88226 * 0.02562 * 6 5 4 8 8 C 1.47856 * 120.49124 * 179.97438 * 7 6 5 9 9 O 1.21552 * 120.00388 * 137.88559 * 8 7 6 10 10 N 1.34773 * 120.00166 * 317.87910 * 8 7 6 11 11 C 1.46501 * 120.00444 * 211.55530 * 10 8 7 12 12 C 1.50690 * 109.46994 * 90.00142 * 11 10 8 13 13 H 1.08000 * 120.00569 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99832 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00019 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99963 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47243 * 59.99910 * 16 14 12 18 18 H 1.48501 * 109.47034 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46863 * 299.99850 * 16 14 12 20 20 C 1.46499 * 119.99661 * 31.55835 * 10 8 7 21 21 C 1.53006 * 109.47016 * 302.11266 * 20 10 8 22 22 C 1.52995 * 109.47462 * 62.11132 * 20 10 8 23 23 C 1.39682 * 120.49109 * 138.18964 * 3 2 1 24 24 H 4.52736 * 13.92858 * 359.97438 * 4 2 1 25 25 H 1.07997 * 119.55436 * 359.97438 * 4 3 2 26 26 H 1.07999 * 119.55585 * 179.97438 * 6 5 4 27 27 H 1.09004 * 109.46662 * 210.00389 * 11 10 8 28 28 H 1.08998 * 109.47020 * 329.99975 * 11 10 8 29 29 H 0.97005 * 120.00106 * 180.02562 * 15 14 12 30 30 H 1.08998 * 109.47574 * 182.11584 * 20 10 8 31 31 H 1.09000 * 109.47160 * 13.59662 * 21 20 10 32 32 H 1.09000 * 109.47355 * 133.59746 * 21 20 10 33 33 H 1.09001 * 109.46797 * 253.59780 * 21 20 10 34 34 H 1.08998 * 109.47165 * 103.23068 * 22 20 10 35 35 H 1.09001 * 109.47244 * 223.22833 * 22 20 10 36 36 H 1.09003 * 109.47486 * 343.22826 * 22 20 10 37 37 H 1.07999 * 120.91636 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3149 -0.8962 0.8018 5 7 4.6325 -0.9020 0.8082 6 6 5.3385 -0.0727 0.0673 7 6 4.7111 0.8570 -0.7638 8 6 5.5120 1.7842 -1.5914 9 8 5.1854 2.0103 -2.7402 10 7 6.6042 2.3790 -1.0720 11 6 6.9937 3.7174 -1.5226 12 6 6.3269 4.7533 -0.6548 13 1 5.6782 4.4456 0.1520 14 6 6.5449 6.0942 -0.8909 15 7 7.3344 6.4690 -1.8736 16 14 5.7189 7.3784 0.1853 17 1 6.1426 7.1889 1.5959 18 1 6.1136 8.7352 -0.2715 19 1 4.2444 7.2320 0.0874 20 6 7.4021 1.6869 -0.0568 21 6 6.5150 1.3423 1.1413 22 6 7.9788 0.4004 -0.6510 23 6 3.3143 0.8981 -0.8024 24 1 -1.0500 -0.0002 0.0008 25 1 2.7760 -1.5938 1.4257 26 1 6.4171 -0.1120 0.1040 27 1 8.0760 3.8246 -1.4500 28 1 6.6835 3.8567 -2.5582 29 1 7.4881 7.4124 -2.0394 30 1 8.2167 2.3339 0.2685 31 1 5.4679 1.4692 0.8666 32 1 6.6901 0.3080 1.4376 33 1 6.7552 2.0042 1.9734 34 1 9.0333 0.5486 -0.8839 35 1 7.8765 -0.4106 0.0701 36 1 7.4376 0.1466 -1.5625 37 1 2.7971 1.6044 -1.4349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627170128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:02 Heat of formation + Delta-G solvation = 114.951611 kcal Electronic energy + Delta-G solvation = -20877.290649 eV Core-core repulsion = 17816.998603 eV Total energy + Delta-G solvation = -3060.292047 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.71595 -40.13858 -38.15730 -35.71960 -35.04399 -33.56579 -33.12417 -31.34324 -29.28784 -28.16442 -26.14776 -25.40173 -24.28864 -23.19647 -21.15518 -19.19468 -18.69066 -18.50605 -17.98281 -17.44591 -16.94743 -16.41980 -16.07267 -15.91683 -15.77576 -15.05562 -14.77419 -14.34115 -14.15607 -13.92009 -13.68782 -13.42780 -13.24410 -13.05514 -12.78909 -12.60279 -12.43975 -12.26843 -12.11744 -11.81996 -11.74148 -11.45272 -11.27653 -10.80442 -10.66750 -10.47617 -9.51286 -9.35461 -8.25262 -6.41726 -0.45695 -0.12909 1.34789 1.37824 1.43074 1.48337 1.70870 1.97134 2.20274 2.37066 2.85817 3.03707 3.11562 3.31663 3.52860 3.63788 3.72133 3.78794 3.99138 4.14516 4.22890 4.38317 4.52067 4.61256 4.77340 4.79706 4.85553 4.95827 5.00162 5.06688 5.12554 5.18050 5.32118 5.44961 5.54173 5.83003 6.01388 6.51157 6.59674 6.67266 6.70336 7.05983 7.30791 8.81017 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016710 B = 0.006211 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.251922 B = 4506.950185 C = 5352.045133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.201 4.201 3 C -0.067 4.067 4 C 0.152 3.848 5 N -0.502 5.502 6 C 0.145 3.855 7 C -0.215 4.215 8 C 0.571 3.429 9 O -0.579 6.579 10 N -0.608 5.608 11 C 0.263 3.737 12 C -0.549 4.549 13 H 0.055 0.945 14 C 0.013 3.987 15 N -0.924 5.924 16 Si 0.964 3.036 17 H -0.261 1.261 18 H -0.278 1.278 19 H -0.277 1.277 20 C 0.123 3.877 21 C -0.201 4.201 22 C -0.180 4.180 23 C -0.019 4.019 24 H 0.266 0.734 25 H 0.197 0.803 26 H 0.224 0.776 27 H 0.029 0.971 28 H 0.000 1.000 29 H 0.268 0.732 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.048 0.952 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.012 -15.602 9.199 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.202 4.202 3 C -0.069 4.069 4 C -0.004 4.004 5 N -0.211 5.211 6 C -0.010 4.010 7 C -0.221 4.221 8 C 0.360 3.640 9 O -0.459 6.459 10 N -0.339 5.339 11 C 0.142 3.858 12 C -0.588 4.588 13 H 0.074 0.926 14 C -0.187 4.187 15 N -0.563 5.563 16 Si 0.789 3.211 17 H -0.185 1.185 18 H -0.203 1.203 19 H -0.203 1.203 20 C 0.020 3.980 21 C -0.258 4.258 22 C -0.237 4.237 23 C -0.045 4.045 24 H 0.282 0.718 25 H 0.213 0.787 26 H 0.239 0.761 27 H 0.047 0.953 28 H 0.018 0.982 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.131 0.869 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.130 0.870 36 H 0.067 0.933 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.610 -15.898 9.031 19.126 hybrid contribution -0.914 2.092 -0.684 2.383 sum -6.523 -13.807 8.348 17.403 Atomic orbital electron populations 1.25839 0.96367 0.96172 0.96301 1.19882 0.91903 1.04255 1.04167 1.16794 0.89033 0.99737 1.01347 1.23595 0.89730 0.93998 0.93065 1.67971 1.07900 1.23154 1.22073 1.25214 1.04601 0.85507 0.85657 1.20971 0.94824 1.02488 1.03793 1.18341 0.80676 0.79547 0.85450 1.90676 1.71854 1.64373 1.18994 1.48009 1.26413 1.17959 1.41560 1.18865 0.95270 0.77452 0.94165 1.21704 1.29348 0.91746 1.15999 0.92626 1.25818 0.95644 1.00579 0.96634 1.70043 1.37813 1.17412 1.31082 0.85517 0.78542 0.77723 0.79363 1.18521 1.20273 1.20283 1.21442 0.94105 0.94978 0.87496 1.23693 1.00216 1.03746 0.98119 1.22720 1.03246 0.96110 1.01643 1.21669 0.92364 0.95731 0.94705 0.71753 0.78657 0.76121 0.95323 0.98188 0.92262 0.88107 0.91492 0.86857 0.91236 0.89375 0.87030 0.93286 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 19.25 74.32 1.43 -0.89 16 2 C -0.20 -4.95 13.27 30.01 0.40 -4.55 16 3 C -0.07 -1.87 5.73 -21.35 -0.12 -1.99 16 4 C 0.15 3.57 10.91 85.04 0.93 4.49 16 5 N -0.50 -12.64 10.30 -208.22 -2.14 -14.78 16 6 C 0.15 4.07 5.87 85.04 0.50 4.57 16 7 C -0.22 -7.72 4.24 -20.03 -0.08 -7.81 16 8 C 0.57 25.55 5.91 86.79 0.51 26.06 16 9 O -0.58 -30.93 16.78 -3.88 -0.07 -31.00 16 10 N -0.61 -26.34 2.38 -805.54 -1.92 -28.26 16 11 C 0.26 14.15 5.31 85.63 0.46 14.61 16 12 C -0.55 -31.08 9.39 25.60 0.24 -30.84 16 13 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 14 C 0.01 0.74 5.46 84.66 0.46 1.20 16 15 N -0.92 -55.12 13.29 21.45 0.28 -54.83 16 16 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 17 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 C 0.12 3.83 3.27 44.99 0.15 3.98 16 21 C -0.20 -5.44 7.73 71.98 0.56 -4.88 16 22 C -0.18 -4.20 8.35 71.98 0.60 -3.59 16 23 C -0.02 -0.66 9.54 22.99 0.22 -0.44 16 24 H 0.27 1.98 7.80 -4.42 -0.03 1.94 16 25 H 0.20 3.06 8.06 -2.91 -0.02 3.04 16 26 H 0.22 5.31 1.07 -4.12 0.00 5.31 16 27 H 0.03 1.55 7.94 -2.38 -0.02 1.53 16 28 H 0.00 0.00 7.35 -2.39 -0.02 -0.02 16 29 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 30 H 0.10 3.16 7.81 -2.39 -0.02 3.14 16 31 H 0.07 2.17 3.96 -11.90 -0.05 2.13 16 32 H 0.11 2.29 5.38 -2.39 -0.01 2.28 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.11 1.75 6.20 -2.39 -0.01 1.73 16 36 H 0.05 1.35 6.83 -2.39 -0.02 1.33 16 37 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -74.39 310.71 5.49 -68.91 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 1.06 Total: 13.90 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 6.24 Total: -0.08 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -3.78 Total: -97.87 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.07 Total: -31.00 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -74.39 5.49 -68.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627170128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.859 kcal (2) G-P(sol) polarization free energy of solvation -74.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds