Wall clock time and date at job start Mon Mar 30 2020 01:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46954 * 119.99787 * 2 1 3 5 5 H 1.07998 * 119.99867 * 120.00389 * 4 2 1 6 6 C 1.37871 * 119.99656 * 299.99943 * 4 2 1 7 7 N 1.31517 * 120.00068 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00499 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.46765 * 89.99663 * 8 6 4 10 10 H 1.48495 * 109.47473 * 209.99555 * 8 6 4 11 11 H 1.48502 * 109.47106 * 329.99956 * 8 6 4 12 12 N 1.46905 * 109.47480 * 239.99906 * 2 1 3 13 13 C 1.46894 * 111.00130 * 84.99939 * 12 2 1 14 14 C 1.50697 * 109.47213 * 180.02562 * 13 12 2 15 15 C 1.36076 * 120.59794 * 259.97767 * 14 13 12 16 16 N 1.32654 * 121.97067 * 180.02562 * 15 14 13 17 17 C 1.31761 * 122.67267 * 0.02562 * 16 15 14 18 18 O 1.35492 * 120.12752 * 180.02562 * 17 16 15 19 19 C 1.41068 * 119.74869 * 0.02562 * 17 16 15 20 20 C 1.40163 * 122.06398 * 179.97438 * 19 17 16 21 21 C 1.36265 * 119.53087 * 179.97438 * 20 19 17 22 22 C 1.39307 * 121.05533 * 0.02562 * 21 20 19 23 23 C 1.36260 * 120.98443 * 359.95686 * 22 21 20 24 24 C 1.40193 * 119.48222 * 0.02562 * 23 22 21 25 25 H 1.08994 * 109.47401 * 300.00338 * 1 2 3 26 26 H 1.09008 * 109.46820 * 60.00651 * 1 2 3 27 27 H 1.08997 * 109.47189 * 179.97438 * 1 2 3 28 28 H 0.96995 * 120.00401 * 180.02562 * 7 6 4 29 29 H 1.00903 * 110.99631 * 321.04546 * 12 2 1 30 30 H 1.09003 * 109.47437 * 60.00120 * 13 12 2 31 31 H 1.09004 * 109.47448 * 300.00514 * 13 12 2 32 32 H 1.08009 * 119.01340 * 0.04890 * 15 14 13 33 33 H 0.96700 * 113.99910 * 90.00320 * 18 17 16 34 34 H 1.08003 * 120.23344 * 0.24257 * 20 19 17 35 35 H 1.07999 * 119.47132 * 179.97438 * 21 20 19 36 36 H 1.08001 * 119.50261 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.26123 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4827 7 7 2.1379 -0.8588 3.5566 8 14 0.6247 1.2792 2.6540 9 1 -0.8029 0.8727 2.6996 10 1 0.9756 1.9952 3.9067 11 1 0.8469 2.1766 1.4919 12 7 2.0197 -0.6925 -1.1994 13 6 2.0826 0.2225 -2.3469 14 6 2.5875 -0.5219 -3.5559 15 6 3.8882 -0.4156 -3.9415 16 7 4.3614 -1.0581 -5.0012 17 6 3.6123 -1.8397 -5.7522 18 8 4.1497 -2.4721 -6.8233 19 6 2.2486 -2.0158 -5.4369 20 6 1.4077 -2.8351 -6.2025 21 6 0.0980 -2.9685 -5.8506 22 6 -0.4196 -2.3029 -4.7417 23 6 0.3691 -1.4988 -3.9750 24 6 1.7216 -1.3389 -4.3078 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.9032 -0.5276 4.4375 29 1 1.4496 -1.4980 -1.4100 30 1 2.7589 1.0461 -2.1183 31 1 1.0872 0.6163 -2.5526 32 1 4.5553 0.2105 -3.3674 33 1 4.5129 -3.3456 -6.6229 34 1 1.7960 -3.3604 -7.0626 35 1 -0.5492 -3.5998 -6.4414 36 1 -1.4616 -2.4264 -4.4859 37 1 -0.0443 -0.9886 -3.1175 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654899810.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:06 Heat of formation + Delta-G solvation = 22.231380 kcal Electronic energy + Delta-G solvation = -20268.084211 eV Core-core repulsion = 17203.771514 eV Total energy + Delta-G solvation = -3064.312698 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.12192 -38.04720 -37.26912 -36.19178 -33.32101 -31.87099 -31.22470 -30.23261 -28.56617 -25.33373 -24.76326 -23.79269 -23.48640 -21.12859 -20.30541 -18.96912 -17.92583 -17.36199 -16.81482 -16.05860 -15.28500 -15.00287 -14.98774 -14.46712 -14.20571 -13.83605 -13.51107 -13.24459 -13.09939 -12.69945 -12.36396 -12.14196 -12.09836 -11.88786 -11.80255 -11.53886 -11.13241 -11.01654 -10.53991 -10.17462 -9.99770 -9.57031 -9.42140 -9.19933 -9.19141 -8.60339 -7.97334 -7.52336 -6.07243 -4.05222 0.25924 0.81873 1.77563 2.93516 3.22201 3.31804 3.35746 3.46529 3.96465 4.37017 4.46955 4.55947 4.66347 4.80138 5.00345 5.06938 5.11738 5.20484 5.24213 5.36274 5.52159 5.62422 5.84211 5.92636 5.97356 6.01549 6.10588 6.21270 6.27932 6.41717 6.42313 6.48016 6.65897 6.71501 7.02844 7.34632 7.63873 7.81692 7.93233 8.19493 8.64733 9.04317 9.54646 11.06278 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026724 B = 0.004589 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.502295 B = 6100.048446 C = 6673.364929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.182 3.818 3 H 0.036 0.964 4 C -0.499 4.499 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.296 1.296 11 H -0.269 1.269 12 N -0.665 5.665 13 C 0.097 3.903 14 C -0.107 4.107 15 C 0.111 3.889 16 N -0.501 5.501 17 C 0.336 3.664 18 O -0.478 6.478 19 C -0.119 4.119 20 C -0.083 4.083 21 C -0.123 4.123 22 C -0.097 4.097 23 C -0.108 4.108 24 C -0.007 4.007 25 H 0.047 0.953 26 H 0.026 0.974 27 H 0.054 0.946 28 H 0.264 0.736 29 H 0.332 0.668 30 H 0.083 0.917 31 H 0.034 0.966 32 H 0.161 0.839 33 H 0.400 0.600 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.802 -2.636 -19.501 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.074 3.926 3 H 0.054 0.946 4 C -0.537 4.537 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.295 5.295 13 C -0.033 4.033 14 C -0.110 4.110 15 C -0.033 4.033 16 N -0.219 5.219 17 C 0.144 3.856 18 O -0.285 6.285 19 C -0.122 4.122 20 C -0.103 4.103 21 C -0.141 4.141 22 C -0.117 4.117 23 C -0.126 4.126 24 C -0.012 4.012 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.149 0.851 30 H 0.101 0.899 31 H 0.052 0.948 32 H 0.178 0.822 33 H 0.258 0.742 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.395 -1.892 -19.574 19.810 hybrid contribution -2.317 0.335 0.477 2.389 sum -4.712 -1.557 -19.096 19.730 Atomic orbital electron populations 1.22884 1.01510 1.00937 0.98988 1.19691 0.88562 0.95248 0.89149 0.94593 1.20951 1.31314 1.13829 0.87639 0.90016 1.24936 0.95974 0.96585 0.95854 1.69879 1.45779 1.40332 0.97858 0.86900 0.80547 0.83940 0.76964 1.20800 1.22376 1.19468 1.60725 1.58229 1.08461 1.02047 1.20859 0.99174 0.95233 0.88021 1.20731 0.94579 0.98277 0.97384 1.21843 0.93264 0.96740 0.91419 1.66969 1.40493 1.08844 1.05557 1.19236 0.87155 0.92570 0.86680 1.84687 1.79143 1.35572 1.29132 1.18909 0.94822 1.01215 0.97297 1.20885 0.93518 0.97169 0.98721 1.20914 0.95580 1.00124 0.97502 1.21003 1.00205 0.95847 0.94618 1.21063 0.92349 0.99152 1.00054 1.18006 0.94334 0.95373 0.93474 0.93454 0.95528 0.92667 0.92645 0.85080 0.89872 0.94778 0.82204 0.74177 0.84913 0.85641 0.85501 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.75 8.64 37.16 0.32 -3.43 16 2 C 0.18 4.11 2.17 -68.86 -0.15 3.96 16 3 H 0.04 0.84 6.86 -51.92 -0.36 0.48 16 4 C -0.50 -13.78 9.42 -34.44 -0.32 -14.11 16 5 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 6 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 7 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 8 Si 0.89 21.45 24.37 -169.99 -4.14 17.31 16 9 H -0.28 -6.62 6.87 56.52 0.39 -6.23 16 10 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.27 -6.21 6.53 56.52 0.37 -5.84 16 12 N -0.66 -12.91 6.22 -109.22 -0.68 -13.59 16 13 C 0.10 1.54 4.96 -4.98 -0.02 1.52 16 14 C -0.11 -1.61 5.41 -104.43 -0.57 -2.17 16 15 C 0.11 1.67 10.71 -17.97 -0.19 1.48 16 16 N -0.50 -7.67 10.33 -13.25 -0.14 -7.80 16 17 C 0.34 4.59 7.82 -16.51 -0.13 4.46 16 18 O -0.48 -5.20 12.86 -18.17 -0.23 -5.43 16 19 C -0.12 -1.57 5.75 -106.74 -0.61 -2.18 16 20 C -0.08 -0.88 9.59 -39.57 -0.38 -1.25 16 21 C -0.12 -1.18 9.95 -39.89 -0.40 -1.57 16 22 C -0.10 -1.02 9.95 -39.90 -0.40 -1.41 16 23 C -0.11 -1.36 8.89 -39.56 -0.35 -1.71 16 24 C -0.01 -0.09 5.75 -106.83 -0.61 -0.71 16 25 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 26 H 0.03 0.45 7.45 -51.92 -0.39 0.06 16 27 H 0.05 1.09 8.13 -51.93 -0.42 0.66 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.33 6.18 7.77 -39.29 -0.31 5.88 16 30 H 0.08 1.30 7.90 -51.93 -0.41 0.89 16 31 H 0.03 0.51 6.40 -51.93 -0.33 0.18 16 32 H 0.16 2.17 8.01 -52.48 -0.42 1.75 16 33 H 0.40 2.37 9.06 45.56 0.41 2.78 16 34 H 0.13 1.09 7.68 -52.48 -0.40 0.69 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.13 1.66 6.53 -52.49 -0.34 1.31 16 LS Contribution 304.23 15.07 4.58 4.58 Total: -1.00 -32.52 304.23 -7.33 -39.86 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -3.59 Total: 6.92 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -3.91 Total: -15.31 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.04 Total: -47.93 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.23 Total: -5.43 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.14 Total: 17.31 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.52 -7.33 -39.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654899810.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.090 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds