Wall clock time and date at job start Mon Mar 30 2020 01:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47460 * 2 1 4 4 C 1.53006 * 109.46756 * 240.00484 * 2 1 3 5 5 C 1.50696 * 109.46824 * 175.00324 * 4 2 1 6 6 C 1.35443 * 126.78121 * 89.99979 * 5 4 2 7 7 C 1.41378 * 103.99130 * 179.97438 * 6 5 4 8 8 N 1.30176 * 106.39146 * 359.97438 * 7 6 5 9 9 O 1.20920 * 111.60661 * 359.72411 * 8 7 6 10 10 N 1.46500 * 109.47300 * 120.00475 * 2 1 3 11 11 C 1.38857 * 119.99656 * 274.99723 * 10 2 1 12 12 C 1.39558 * 119.84385 * 359.72383 * 11 10 2 13 13 C 1.36341 * 120.16209 * 180.27514 * 12 11 10 14 14 C 1.40882 * 119.83452 * 0.02562 * 13 12 11 15 15 C 1.41145 * 120.15304 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99839 * 204.62290 * 15 14 13 17 17 C 1.39857 * 120.00033 * 24.63504 * 15 14 13 18 18 N 1.30909 * 120.00127 * 17.96172 * 17 15 14 19 19 Si 1.86798 * 120.00067 * 197.96434 * 17 15 14 20 20 H 1.48507 * 109.47282 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47481 * 119.99605 * 19 17 15 22 22 H 1.48500 * 109.47366 * 239.99884 * 19 17 15 23 23 C 1.40886 * 119.69323 * 0.02562 * 14 13 12 24 24 C 1.36347 * 119.83044 * 359.97438 * 23 14 13 25 25 H 1.08996 * 109.47460 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46982 * 300.00068 * 1 2 3 27 27 H 1.09007 * 109.47519 * 59.99198 * 1 2 3 28 28 H 1.09004 * 109.46817 * 294.99588 * 4 2 1 29 29 H 1.08993 * 109.47507 * 54.99862 * 4 2 1 30 30 H 1.08006 * 128.00618 * 359.97366 * 6 5 4 31 31 H 1.08003 * 126.80560 * 179.97438 * 7 6 5 32 32 H 0.96998 * 119.99645 * 94.99704 * 10 2 1 33 33 H 1.08007 * 119.92335 * 0.27442 * 12 11 10 34 34 H 1.08007 * 120.08380 * 180.02562 * 13 12 11 35 35 H 0.96996 * 119.99682 * 180.02562 * 18 17 15 36 36 H 1.07993 * 120.08756 * 180.02562 * 23 14 13 37 37 H 1.07998 * 119.91673 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5418 -0.6149 -1.3128 6 6 4.4391 -1.4779 -0.7794 7 6 5.6931 -0.9218 -1.1213 8 7 5.4423 0.1649 -1.7927 9 8 4.2534 0.3488 -1.9142 10 7 2.0183 -0.6907 1.1961 11 6 2.1510 0.0020 2.3922 12 6 1.8237 1.3574 2.4498 13 6 1.9568 2.0452 3.6195 14 6 2.4266 1.3844 4.7716 15 6 2.5675 2.0900 5.9858 16 1 3.2662 1.7443 6.7334 17 6 1.8022 3.2367 6.2211 18 7 0.7282 3.4646 5.5081 19 14 2.3126 4.4433 7.5527 20 1 3.5531 3.9593 8.2102 21 1 2.5614 5.7752 6.9449 22 1 1.2289 4.5543 8.5619 23 6 2.7562 0.0162 4.7058 24 6 2.6181 -0.6589 3.5292 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 1.7515 -1.7715 -1.2057 29 1 1.6053 -0.2617 -2.1370 30 1 4.2422 -2.3818 -0.2219 31 1 6.6664 -1.3197 -0.8744 32 1 2.2490 -1.6318 1.1524 33 1 1.4640 1.8629 1.5657 34 1 1.7027 3.0941 3.6627 35 1 0.1977 4.2601 5.6711 36 1 3.1165 -0.4968 5.5851 37 1 2.8707 -1.7076 3.4771 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664218337.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:18 Heat of formation + Delta-G solvation = 79.386388 kcal Electronic energy + Delta-G solvation = -20159.448351 eV Core-core repulsion = 17097.614080 eV Total energy + Delta-G solvation = -3061.834270 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.83600 -38.34919 -36.41175 -33.88705 -33.58325 -32.28671 -30.62581 -29.45026 -28.04744 -26.99766 -24.37579 -23.42026 -22.03183 -21.43113 -20.68560 -19.59292 -17.45712 -17.25845 -17.20562 -16.36414 -15.43834 -15.07536 -14.85760 -13.90690 -13.87373 -13.42814 -13.30088 -12.92866 -12.73182 -12.52685 -12.11217 -11.97615 -11.74850 -11.54631 -11.30329 -11.21612 -11.02201 -10.89426 -10.70457 -10.45693 -10.38889 -9.68333 -9.30117 -9.26564 -9.22051 -8.54822 -7.48636 -6.64313 -6.39240 -4.02816 1.54433 2.35996 2.90890 3.10492 3.12515 3.16083 3.21421 3.35526 4.06181 4.20400 4.41404 4.53944 4.76512 4.89496 5.10192 5.20658 5.26135 5.53133 5.66934 5.69082 5.72275 5.84912 5.90198 6.07916 6.14468 6.26333 6.35267 6.48838 6.93312 6.93897 7.20674 7.36080 7.55222 7.69324 7.84217 8.16037 8.28481 8.30716 8.48794 8.68940 8.80004 9.06889 9.15587 10.37763 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024346 B = 0.004280 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.832547 B = 6539.956917 C = 6862.179186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.162 3.838 3 H 0.078 0.922 4 C -0.048 4.048 5 C -0.015 4.015 6 C -0.227 4.227 7 C -0.010 4.010 8 N -0.371 5.371 9 O 0.095 5.905 10 N -0.754 5.754 11 C 0.095 3.905 12 C -0.164 4.164 13 C -0.124 4.124 14 C 0.075 3.925 15 C -0.467 4.467 16 H 0.072 0.928 17 C 0.075 3.925 18 N -0.808 5.808 19 Si 0.901 3.099 20 H -0.263 1.263 21 H -0.274 1.274 22 H -0.277 1.277 23 C -0.188 4.188 24 C -0.158 4.158 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.167 0.833 31 H 0.187 0.813 32 H 0.382 0.618 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.275 0.725 36 H 0.090 0.910 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.103 -7.678 -12.207 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.055 3.945 3 H 0.096 0.904 4 C -0.087 4.087 5 C -0.079 4.079 6 C -0.248 4.248 7 C -0.188 4.188 8 N -0.075 5.075 9 O 0.029 5.971 10 N -0.389 5.389 11 C -0.002 4.002 12 C -0.185 4.185 13 C -0.144 4.144 14 C 0.072 3.928 15 C -0.498 4.498 16 H 0.090 0.910 17 C -0.140 4.140 18 N -0.435 5.435 19 Si 0.726 3.274 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.203 1.203 23 C -0.208 4.208 24 C -0.180 4.180 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.185 0.815 31 H 0.204 0.796 32 H 0.214 0.786 33 H 0.107 0.893 34 H 0.135 0.865 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.629 -6.401 -12.884 14.479 hybrid contribution 0.033 -0.536 1.202 1.316 sum 1.662 -6.937 -11.682 13.688 Atomic orbital electron populations 1.22303 0.95987 1.01968 1.02344 1.20581 0.93267 0.96945 0.83744 0.90444 1.20567 0.84460 1.03341 1.00316 1.24411 0.96793 0.89473 0.97238 1.22455 0.91310 1.04119 1.06965 1.25000 1.00986 0.93207 0.99649 1.73851 0.94974 1.18836 1.19836 1.84786 1.12454 1.42360 1.57528 1.43883 1.77277 1.10855 1.06887 1.17277 1.05403 0.91944 0.85553 1.20116 1.07784 0.92698 0.97923 1.20941 1.02673 0.99724 0.91101 1.17501 0.91761 0.90539 0.93038 1.19401 1.20457 1.08008 1.01953 0.90959 1.25783 0.93444 0.98015 0.96757 1.69863 1.11086 1.25212 1.37332 0.86385 0.79645 0.80449 0.80897 1.18644 1.19952 1.20268 1.20534 1.09764 0.94580 0.95931 1.19778 1.07690 0.97420 0.93134 0.92727 0.91267 0.92590 0.88414 0.88527 0.81530 0.79587 0.78559 0.89316 0.86456 0.91398 0.89165 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.41 37.16 0.35 -1.69 16 2 C 0.16 2.12 2.25 -67.93 -0.15 1.97 16 3 H 0.08 1.19 6.44 -51.93 -0.33 0.85 16 4 C -0.05 -0.47 5.32 -27.88 -0.15 -0.62 16 5 C -0.02 -0.19 6.48 -35.31 -0.23 -0.42 16 6 C -0.23 -2.67 11.03 -39.39 -0.43 -3.10 16 7 C -0.01 -0.13 12.17 -17.06 -0.21 -0.34 16 8 N -0.37 -5.58 12.07 30.36 0.37 -5.21 16 9 O 0.09 1.36 11.20 17.16 0.19 1.55 16 10 N -0.75 -11.83 4.88 -52.04 -0.25 -12.08 16 11 C 0.09 1.98 6.65 -83.69 -0.56 1.42 16 12 C -0.16 -3.75 8.75 -39.77 -0.35 -4.10 16 13 C -0.12 -3.26 8.64 -39.27 -0.34 -3.60 16 14 C 0.07 2.02 5.57 -106.79 -0.60 1.42 16 15 C -0.47 -12.77 9.03 -37.87 -0.34 -13.11 16 16 H 0.07 1.92 7.91 -52.48 -0.41 1.50 16 17 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 18 N -0.81 -21.49 10.96 55.54 0.61 -20.88 16 19 Si 0.90 19.37 29.60 -169.99 -5.03 14.34 16 20 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 C -0.19 -4.64 9.74 -39.26 -0.38 -5.02 16 24 C -0.16 -3.47 9.82 -39.77 -0.39 -3.86 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.05 7.68 -51.93 -0.40 0.65 16 27 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.17 1.59 8.06 -52.48 -0.42 1.16 16 31 H 0.19 1.78 8.06 -52.48 -0.42 1.36 16 32 H 0.38 5.24 8.60 -40.82 -0.35 4.89 16 33 H 0.09 1.86 6.05 -52.48 -0.32 1.54 16 34 H 0.12 3.21 6.16 -52.48 -0.32 2.88 16 35 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 36 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 37 H 0.08 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 315.97 15.07 4.76 4.76 Total: -1.00 -29.80 315.97 -7.88 -37.67 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -4.66 Total: 9.02 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -3.87 Total: -29.17 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.72 Total: -38.17 kcal Atomic # 8 Polarization: 1.36 SS G_CDS: 0.19 Total: 1.55 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.80 -7.88 -37.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664218337.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.060 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds