Wall clock time and date at job start Mon Mar 30 2020 01:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47460 * 2 1 4 4 C 1.53006 * 109.46756 * 240.00484 * 2 1 3 5 5 C 1.50696 * 109.46824 * 175.00324 * 4 2 1 6 6 C 1.35443 * 126.78121 * 89.99979 * 5 4 2 7 7 C 1.41378 * 103.99130 * 179.97438 * 6 5 4 8 8 N 1.30176 * 106.39146 * 359.97438 * 7 6 5 9 9 O 1.20920 * 111.60661 * 359.72411 * 8 7 6 10 10 N 1.46500 * 109.47300 * 120.00475 * 2 1 3 11 11 C 1.38857 * 119.99656 * 274.99723 * 10 2 1 12 12 C 1.39558 * 119.84385 * 359.72383 * 11 10 2 13 13 C 1.36341 * 120.16209 * 180.27514 * 12 11 10 14 14 C 1.40882 * 119.83452 * 0.02562 * 13 12 11 15 15 C 1.41145 * 120.15304 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99839 * 204.62290 * 15 14 13 17 17 C 1.39857 * 120.00033 * 24.63504 * 15 14 13 18 18 N 1.30909 * 120.00127 * 17.96172 * 17 15 14 19 19 Si 1.86798 * 120.00067 * 197.96434 * 17 15 14 20 20 H 1.48507 * 109.47282 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47481 * 119.99605 * 19 17 15 22 22 H 1.48500 * 109.47366 * 239.99884 * 19 17 15 23 23 C 1.40886 * 119.69323 * 0.02562 * 14 13 12 24 24 C 1.36347 * 119.83044 * 359.97438 * 23 14 13 25 25 H 1.08996 * 109.47460 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46982 * 300.00068 * 1 2 3 27 27 H 1.09007 * 109.47519 * 59.99198 * 1 2 3 28 28 H 1.09004 * 109.46817 * 294.99588 * 4 2 1 29 29 H 1.08993 * 109.47507 * 54.99862 * 4 2 1 30 30 H 1.08006 * 128.00618 * 359.97366 * 6 5 4 31 31 H 1.08003 * 126.80560 * 179.97438 * 7 6 5 32 32 H 0.96998 * 119.99645 * 94.99704 * 10 2 1 33 33 H 1.08007 * 119.92335 * 0.27442 * 12 11 10 34 34 H 1.08007 * 120.08380 * 180.02562 * 13 12 11 35 35 H 0.96996 * 119.99682 * 180.02562 * 18 17 15 36 36 H 1.07993 * 120.08756 * 180.02562 * 23 14 13 37 37 H 1.07998 * 119.91673 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5418 -0.6149 -1.3128 6 6 4.4391 -1.4779 -0.7794 7 6 5.6931 -0.9218 -1.1213 8 7 5.4423 0.1649 -1.7927 9 8 4.2534 0.3488 -1.9142 10 7 2.0183 -0.6907 1.1961 11 6 2.1510 0.0020 2.3922 12 6 1.8237 1.3574 2.4498 13 6 1.9568 2.0452 3.6195 14 6 2.4266 1.3844 4.7716 15 6 2.5675 2.0900 5.9858 16 1 3.2662 1.7443 6.7334 17 6 1.8022 3.2367 6.2211 18 7 0.7282 3.4646 5.5081 19 14 2.3126 4.4433 7.5527 20 1 3.5531 3.9593 8.2102 21 1 2.5614 5.7752 6.9449 22 1 1.2289 4.5543 8.5619 23 6 2.7562 0.0162 4.7058 24 6 2.6181 -0.6589 3.5292 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 1.7515 -1.7715 -1.2057 29 1 1.6053 -0.2617 -2.1370 30 1 4.2422 -2.3818 -0.2219 31 1 6.6664 -1.3197 -0.8744 32 1 2.2490 -1.6318 1.1524 33 1 1.4640 1.8629 1.5657 34 1 1.7027 3.0941 3.6627 35 1 0.1977 4.2601 5.6711 36 1 3.1165 -0.4968 5.5851 37 1 2.8707 -1.7076 3.4771 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664218337.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:18 Heat of formation + Delta-G solvation = 62.619599 kcal Electronic energy + Delta-G solvation = -20160.175413 eV Core-core repulsion = 17097.614080 eV Total energy + Delta-G solvation = -3062.561333 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.81655 -39.95202 -37.83877 -35.46201 -34.69685 -33.62219 -31.95600 -31.29547 -29.74935 -27.92374 -26.17743 -24.39362 -23.47073 -22.77650 -22.16072 -21.04502 -19.14478 -18.47604 -18.29100 -17.87013 -16.87427 -16.55207 -16.01876 -15.62942 -15.12152 -14.66189 -14.39333 -14.34054 -14.20016 -13.88651 -13.56903 -13.48734 -13.31415 -12.80440 -12.74608 -12.64002 -12.44128 -12.30063 -12.15752 -11.89450 -11.54388 -11.36325 -11.12662 -11.06565 -10.30905 -10.18646 -9.37134 -8.54453 -8.11998 -5.98834 0.59332 1.11952 1.20921 1.39082 1.43288 1.53107 1.58694 2.25118 2.27082 2.85633 2.92824 3.53916 3.66982 3.87270 3.94649 4.20528 4.31709 4.33306 4.51515 4.53838 4.60948 4.74794 4.87129 4.90860 4.93732 5.05823 5.15026 5.20692 5.24317 5.31294 5.46640 5.49261 5.72173 5.84105 5.99691 6.20968 6.41591 6.69050 6.90453 7.10062 7.19376 7.34948 7.38908 8.49044 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024346 B = 0.004280 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.832547 B = 6539.956917 C = 6862.179186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.158 3.842 3 H 0.052 0.948 4 C -0.037 4.037 5 C -0.023 4.023 6 C -0.229 4.229 7 C -0.016 4.016 8 N -0.407 5.407 9 O 0.074 5.926 10 N -0.740 5.740 11 C 0.124 3.876 12 C -0.176 4.176 13 C -0.145 4.145 14 C 0.032 3.968 15 C -0.507 4.507 16 H 0.065 0.935 17 C 0.032 3.968 18 N -0.842 5.842 19 Si 0.973 3.027 20 H -0.262 1.262 21 H -0.268 1.268 22 H -0.267 1.267 23 C -0.196 4.196 24 C -0.166 4.166 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.082 0.918 28 H 0.130 0.870 29 H 0.122 0.878 30 H 0.193 0.807 31 H 0.210 0.790 32 H 0.398 0.602 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.281 0.719 36 H 0.094 0.906 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.897 -9.569 -13.574 16.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.052 3.948 3 H 0.070 0.930 4 C -0.075 4.075 5 C -0.087 4.087 6 C -0.250 4.250 7 C -0.194 4.194 8 N -0.114 5.114 9 O 0.011 5.989 10 N -0.375 5.375 11 C 0.024 3.976 12 C -0.198 4.198 13 C -0.165 4.165 14 C 0.029 3.971 15 C -0.539 4.539 16 H 0.083 0.917 17 C -0.179 4.179 18 N -0.471 5.471 19 Si 0.795 3.205 20 H -0.185 1.185 21 H -0.193 1.193 22 H -0.192 1.192 23 C -0.216 4.216 24 C -0.188 4.188 25 H 0.091 0.909 26 H 0.052 0.948 27 H 0.101 0.899 28 H 0.148 0.852 29 H 0.140 0.860 30 H 0.210 0.790 31 H 0.227 0.773 32 H 0.233 0.767 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.403 -8.329 -14.302 16.609 hybrid contribution 0.099 -0.119 1.438 1.446 sum 1.502 -8.447 -12.864 15.463 Atomic orbital electron populations 1.22222 0.94791 1.03027 1.01950 1.20722 0.94042 0.96000 0.84064 0.92958 1.20623 0.82761 1.05018 0.99109 1.24939 0.97934 0.88987 0.96831 1.22852 0.90672 1.04794 1.06729 1.25568 1.02665 0.92539 0.98607 1.73852 0.95541 1.20392 1.21615 1.84745 1.12517 1.43340 1.58304 1.43926 1.76137 1.11520 1.05919 1.17346 1.01885 0.91202 0.87177 1.20259 1.08170 0.93923 0.97410 1.20854 1.04234 0.99082 0.92374 1.17811 0.93868 0.91954 0.93459 1.19609 1.21690 1.10052 1.02543 0.91658 1.26569 0.92990 0.99233 0.99131 1.69927 1.12010 1.26006 1.39137 0.85297 0.79280 0.77879 0.78029 1.18527 1.19264 1.19216 1.20754 1.09476 0.94020 0.97398 1.20096 1.07267 0.99051 0.92364 0.90897 0.94807 0.89933 0.85212 0.85969 0.79016 0.77287 0.76672 0.87911 0.88773 0.90863 0.88784 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 9.41 71.98 0.68 -2.75 16 2 C 0.16 3.66 2.25 44.99 0.10 3.76 16 3 H 0.05 1.52 6.44 -2.39 -0.02 1.50 16 4 C -0.04 -0.56 5.32 29.85 0.16 -0.40 16 5 C -0.02 -0.50 6.48 25.04 0.16 -0.34 16 6 C -0.23 -4.64 11.03 22.40 0.25 -4.39 16 7 C -0.02 -0.37 12.17 85.71 1.04 0.67 16 8 N -0.41 -11.85 12.07 -59.26 -0.72 -12.56 16 9 O 0.07 2.03 11.20 71.59 0.80 2.83 16 10 N -0.74 -20.79 4.88 -318.55 -1.55 -22.35 16 11 C 0.12 4.96 6.65 38.67 0.26 5.22 16 12 C -0.18 -8.13 8.75 22.15 0.19 -7.93 16 13 C -0.15 -7.93 8.64 22.47 0.19 -7.73 16 14 C 0.03 1.79 5.57 -21.27 -0.12 1.68 16 15 C -0.51 -29.04 9.03 23.38 0.21 -28.83 16 16 H 0.07 3.65 7.91 -2.91 -0.02 3.62 16 17 C 0.03 1.74 5.13 85.22 0.44 2.17 16 18 N -0.84 -46.69 10.96 21.81 0.24 -46.45 16 19 Si 0.97 40.92 29.60 68.60 2.03 42.95 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 21 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 22 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 23 C -0.20 -9.79 9.74 22.48 0.22 -9.57 16 24 C -0.17 -6.99 9.82 22.15 0.22 -6.77 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.03 0.96 7.68 -2.39 -0.02 0.95 16 27 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.13 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 31 H 0.21 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.40 9.01 8.60 -92.71 -0.80 8.22 16 33 H 0.10 4.36 6.05 -2.91 -0.02 4.34 16 34 H 0.09 5.47 6.16 -2.91 -0.02 5.45 16 35 H 0.28 14.16 8.30 -92.71 -0.77 13.39 16 36 H 0.09 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -68.70 315.97 5.09 -63.61 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.29 Total: 27.19 kcal Atomic # 6 Polarization: -59.22 SS G_CDS: 4.00 Total: -55.22 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -2.03 Total: -81.36 kcal Atomic # 8 Polarization: 2.03 SS G_CDS: 0.80 Total: 2.83 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -68.70 5.09 -63.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664218337.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.225 kcal (2) G-P(sol) polarization free energy of solvation -68.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds