Wall clock time and date at job start Mon Mar 30 2020 01:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47534 * 2 1 4 4 C 1.53000 * 109.47027 * 120.00262 * 2 1 3 5 5 C 1.50696 * 109.47152 * 184.99893 * 4 2 1 6 6 C 1.35451 * 126.78502 * 89.70705 * 5 4 2 7 7 C 1.41374 * 103.99318 * 179.91095 * 6 5 4 8 8 N 1.30179 * 106.39439 * 0.35642 * 7 6 5 9 9 O 1.20921 * 111.60182 * 359.77383 * 8 7 6 10 10 N 1.46504 * 109.47146 * 239.99741 * 2 1 3 11 11 C 1.38866 * 119.99739 * 84.99926 * 10 2 1 12 12 C 1.39566 * 119.84047 * 0.25540 * 11 10 2 13 13 C 1.36341 * 120.15728 * 180.25595 * 12 11 10 14 14 C 1.40890 * 119.83675 * 359.49286 * 13 12 11 15 15 C 1.41130 * 120.15869 * 180.27698 * 14 13 12 16 16 H 1.08001 * 120.00266 * 154.52104 * 15 14 13 17 17 C 1.39872 * 119.99649 * 334.53027 * 15 14 13 18 18 N 1.30895 * 119.99806 * 343.06174 * 17 15 14 19 19 Si 1.86802 * 119.99630 * 163.06055 * 17 15 14 20 20 H 1.48503 * 109.47104 * 60.00260 * 19 17 15 21 21 H 1.48504 * 109.46748 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47517 * 299.99898 * 19 17 15 23 23 C 1.40892 * 119.68821 * 0.25538 * 14 13 12 24 24 C 1.36340 * 119.83544 * 359.97438 * 23 14 13 25 25 H 1.09002 * 109.46803 * 300.00677 * 1 2 3 26 26 H 1.09005 * 109.46804 * 59.99468 * 1 2 3 27 27 H 1.08999 * 109.47534 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47052 * 304.99350 * 4 2 1 29 29 H 1.08997 * 109.47503 * 64.99629 * 4 2 1 30 30 H 1.08004 * 128.00030 * 0.02562 * 6 5 4 31 31 H 1.07998 * 126.80499 * 180.17241 * 7 6 5 32 32 H 0.96998 * 120.00104 * 265.00442 * 10 2 1 33 33 H 1.07995 * 119.92348 * 0.02562 * 12 11 10 34 34 H 1.07993 * 120.08407 * 179.77024 * 13 12 11 35 35 H 0.97009 * 119.99636 * 180.02562 * 18 17 15 36 36 H 1.07993 * 120.08152 * 180.02562 * 23 14 13 37 37 H 1.08002 * 119.91699 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5418 -0.6150 1.3127 6 6 4.2611 0.3652 1.9098 7 6 5.6050 -0.0099 1.6824 8 7 5.5667 -1.1174 0.9992 9 8 4.4299 -1.4688 0.7843 10 7 2.0184 -0.6907 -1.1962 11 6 2.1509 0.0021 -2.3924 12 6 1.8231 1.3574 -2.4500 13 6 1.9459 2.0426 -3.6223 14 6 2.4151 1.3817 -4.7747 15 6 2.5504 2.0858 -5.9903 16 1 3.2583 1.7494 -6.7334 17 6 1.7677 3.2194 -6.2326 18 7 0.6980 3.4424 -5.5120 19 14 2.2492 4.4151 -7.5846 20 1 2.2672 3.7060 -8.8893 21 1 1.2635 5.5245 -7.6384 22 1 3.5992 4.9651 -7.3015 23 6 2.7492 0.0146 -4.7077 24 6 2.6169 -0.6591 -3.5297 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6054 -0.2617 2.1370 29 1 1.7516 -1.7715 1.2056 30 1 3.8930 1.2318 2.4390 31 1 6.4884 0.5191 2.0080 32 1 2.2490 -1.6318 -1.1526 33 1 1.4678 1.8639 -1.5648 34 1 1.6883 3.0905 -3.6664 35 1 0.1550 4.2284 -5.6803 36 1 3.1099 -0.4982 -5.5870 37 1 2.8730 -1.7070 -3.4768 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664218338.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:20 Heat of formation + Delta-G solvation = 61.984726 kcal Electronic energy + Delta-G solvation = -20170.097271 eV Core-core repulsion = 17107.508408 eV Total energy + Delta-G solvation = -3062.588863 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.80270 -39.95001 -37.81804 -35.47686 -34.71897 -33.62183 -31.92558 -31.31114 -29.74014 -27.92706 -26.17171 -24.37997 -23.47360 -22.78366 -22.15827 -21.03233 -19.14384 -18.47079 -18.40831 -17.71111 -16.89444 -16.54499 -16.05416 -15.66040 -14.90328 -14.68343 -14.64577 -14.27298 -14.19034 -13.76124 -13.70850 -13.46564 -13.18545 -12.83593 -12.77575 -12.73003 -12.38637 -12.30488 -12.13734 -11.89326 -11.56026 -11.35622 -11.14202 -11.05879 -10.34593 -10.16841 -9.38440 -8.53083 -8.12767 -5.99669 0.60376 1.12814 1.20427 1.39500 1.42282 1.50263 1.60399 2.27738 2.28030 2.85920 2.91157 3.55283 3.70023 3.86374 3.95022 4.15810 4.23587 4.40916 4.51077 4.53587 4.61977 4.73295 4.87357 4.89713 4.94102 5.04402 5.14032 5.20144 5.24935 5.30737 5.46580 5.49832 5.72620 5.82157 5.98308 6.19742 6.41467 6.69283 6.90328 7.09703 7.17736 7.32976 7.37574 8.49904 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024738 B = 0.004285 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.592229 B = 6532.179542 C = 6869.444496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.157 3.843 3 H 0.064 0.936 4 C -0.039 4.039 5 C -0.021 4.021 6 C -0.240 4.240 7 C -0.018 4.018 8 N -0.408 5.408 9 O 0.079 5.921 10 N -0.746 5.746 11 C 0.122 3.878 12 C -0.172 4.172 13 C -0.141 4.141 14 C 0.033 3.967 15 C -0.509 4.509 16 H 0.064 0.936 17 C 0.034 3.966 18 N -0.842 5.842 19 Si 0.975 3.025 20 H -0.263 1.263 21 H -0.268 1.268 22 H -0.265 1.265 23 C -0.198 4.198 24 C -0.172 4.172 25 H 0.088 0.912 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.145 0.855 29 H 0.107 0.893 30 H 0.198 0.802 31 H 0.212 0.788 32 H 0.394 0.606 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.282 0.718 36 H 0.091 0.909 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 -4.060 16.722 17.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.051 3.949 3 H 0.082 0.918 4 C -0.077 4.077 5 C -0.085 4.085 6 C -0.262 4.262 7 C -0.196 4.196 8 N -0.114 5.114 9 O 0.016 5.984 10 N -0.381 5.381 11 C 0.023 3.977 12 C -0.194 4.194 13 C -0.161 4.161 14 C 0.030 3.970 15 C -0.541 4.541 16 H 0.082 0.918 17 C -0.178 4.178 18 N -0.470 5.470 19 Si 0.796 3.204 20 H -0.188 1.188 21 H -0.192 1.192 22 H -0.189 1.189 23 C -0.218 4.218 24 C -0.194 4.194 25 H 0.107 0.893 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.163 0.837 29 H 0.125 0.875 30 H 0.215 0.785 31 H 0.228 0.772 32 H 0.228 0.772 33 H 0.128 0.872 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.939 -4.593 16.358 17.016 hybrid contribution 0.037 0.941 -0.702 1.174 sum 0.977 -3.652 15.656 16.106 Atomic orbital electron populations 1.22229 0.94783 1.02815 1.02202 1.20836 0.94071 0.96287 0.83683 0.91841 1.20689 0.82487 1.04712 0.99796 1.24986 0.95853 0.91315 0.96358 1.22960 0.91838 1.03313 1.08048 1.25587 1.00910 0.94163 0.98951 1.73865 1.00592 1.17968 1.18976 1.84755 1.10774 1.44334 1.58545 1.44072 1.76099 1.11524 1.06376 1.17386 1.01918 0.91466 0.86973 1.20258 1.08020 0.93483 0.97596 1.20870 1.03915 0.99196 0.92155 1.17805 0.93835 0.91686 0.93668 1.19549 1.20978 1.10960 1.02600 0.91789 1.26558 0.92962 0.98961 0.99332 1.69903 1.11653 1.26424 1.39039 0.85376 0.79004 0.77612 0.78370 1.18783 1.19223 1.18919 1.20741 1.09640 0.94270 0.97130 1.20099 1.07646 0.98877 0.92783 0.89340 0.94738 0.91496 0.83710 0.87509 0.78455 0.77161 0.77174 0.87187 0.88336 0.90772 0.89045 0.87075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 9.41 71.98 0.68 -2.70 16 2 C 0.16 3.61 2.25 44.99 0.10 3.72 16 3 H 0.06 1.68 6.44 -2.39 -0.02 1.66 16 4 C -0.04 -0.59 5.32 29.85 0.16 -0.43 16 5 C -0.02 -0.46 6.47 25.04 0.16 -0.30 16 6 C -0.24 -4.75 11.09 22.40 0.25 -4.50 16 7 C -0.02 -0.43 12.17 85.71 1.04 0.62 16 8 N -0.41 -12.06 12.07 -59.27 -0.72 -12.78 16 9 O 0.08 2.22 11.20 71.57 0.80 3.02 16 10 N -0.75 -22.98 4.93 -318.52 -1.57 -24.55 16 11 C 0.12 5.13 6.65 38.67 0.26 5.39 16 12 C -0.17 -7.90 8.75 22.15 0.19 -7.71 16 13 C -0.14 -7.67 8.63 22.48 0.19 -7.48 16 14 C 0.03 1.87 5.57 -21.27 -0.12 1.75 16 15 C -0.51 -29.35 9.03 23.38 0.21 -29.14 16 16 H 0.06 3.60 7.90 -2.91 -0.02 3.58 16 17 C 0.03 1.80 5.15 85.23 0.44 2.24 16 18 N -0.84 -46.33 10.96 21.82 0.24 -46.09 16 19 Si 0.97 40.78 29.59 68.60 2.03 42.81 16 20 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 21 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 23 C -0.20 -10.26 9.74 22.48 0.22 -10.04 16 24 C -0.17 -7.78 9.82 22.15 0.22 -7.56 16 25 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.03 0.97 7.69 -2.38 -0.02 0.95 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.20 2.55 8.06 -2.91 -0.02 2.52 16 31 H 0.21 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.39 11.00 8.60 -92.71 -0.80 10.20 16 33 H 0.11 4.48 6.06 -2.91 -0.02 4.46 16 34 H 0.10 5.62 6.19 -2.91 -0.02 5.60 16 35 H 0.28 14.12 8.30 -92.70 -0.77 13.35 16 36 H 0.09 4.56 8.06 -2.91 -0.02 4.54 16 37 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -69.17 316.10 5.08 -64.10 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: 0.29 Total: 29.63 kcal Atomic # 6 Polarization: -60.15 SS G_CDS: 4.00 Total: -56.14 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -2.05 Total: -83.41 kcal Atomic # 8 Polarization: 2.22 SS G_CDS: 0.80 Total: 3.02 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -69.17 5.08 -64.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664218338.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.080 kcal (2) G-P(sol) polarization free energy of solvation -69.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds