Wall clock time and date at job start Mon Mar 30 2020 01:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00161 * 2 1 4 4 C 1.50698 * 109.47360 * 66.04288 * 3 2 1 5 5 H 1.08004 * 119.99396 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00424 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00300 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 119.99606 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.46919 * 89.99849 * 8 6 4 10 10 H 1.48505 * 109.46606 * 209.99733 * 8 6 4 11 11 H 1.48495 * 109.47025 * 329.99619 * 8 6 4 12 12 C 1.46900 * 111.00141 * 236.04569 * 2 1 3 13 13 C 1.50703 * 109.47189 * 293.95483 * 12 2 1 14 14 N 1.32369 * 118.50955 * 269.98254 * 13 12 2 15 15 C 1.32619 * 121.48269 * 180.02562 * 14 13 12 16 16 N 1.37851 * 120.90980 * 180.02562 * 15 14 13 17 17 C 1.41648 * 118.17741 * 359.97438 * 15 14 13 18 18 C 1.39919 * 122.11583 * 179.97438 * 17 15 14 19 19 C 1.36388 * 119.50461 * 180.02562 * 18 17 15 20 20 C 1.39215 * 120.89315 * 0.02562 * 19 18 17 21 21 C 1.36324 * 121.02457 * 359.97438 * 20 19 18 22 22 C 1.40148 * 119.58109 * 0.02562 * 21 20 19 23 23 N 1.31169 * 118.51322 * 89.99609 * 13 12 2 24 24 H 1.08997 * 109.46812 * 183.95313 * 1 2 3 25 25 H 1.09002 * 109.46848 * 303.95849 * 1 2 3 26 26 H 1.09002 * 109.46877 * 63.95589 * 1 2 3 27 27 H 1.09002 * 109.47214 * 186.04800 * 3 2 1 28 28 H 1.09002 * 109.46952 * 306.04557 * 3 2 1 29 29 H 0.97003 * 119.99982 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47351 * 173.95651 * 12 2 1 31 31 H 1.08994 * 109.47256 * 53.95227 * 12 2 1 32 32 H 0.97001 * 119.99604 * 179.97438 * 16 15 14 33 33 H 0.96995 * 120.00091 * 359.96523 * 16 15 14 34 34 H 1.07997 * 120.24955 * 0.05067 * 18 17 15 35 35 H 1.08001 * 119.55583 * 179.97438 * 19 18 17 36 36 H 1.07996 * 119.48681 * 179.97438 * 20 19 18 37 37 H 1.07990 * 120.20533 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0277 3.3492 1.5289 7 7 1.7152 3.9387 2.6621 8 14 3.0010 4.2758 0.2313 9 1 2.0644 4.9803 -0.6807 10 1 3.8882 5.2667 0.8919 11 1 3.8241 3.3169 -0.5486 12 6 1.9955 -0.7660 -1.1376 13 6 1.6370 -2.2204 -0.9729 14 7 2.4792 -3.0092 -0.3243 15 6 2.2230 -4.2982 -0.1457 16 7 3.1084 -5.1088 0.5320 17 6 1.0143 -4.8187 -0.6696 18 6 0.6619 -6.1655 -0.5293 19 6 -0.5153 -6.6101 -1.0554 20 6 -1.3697 -5.7423 -1.7299 21 6 -1.0552 -4.4248 -1.8835 22 6 0.1468 -3.9343 -1.3553 23 7 0.5046 -2.6474 -1.4789 24 1 -0.3633 -1.0252 0.0708 25 1 -0.3633 0.5741 0.8524 26 1 -0.3633 0.4512 -0.9233 27 1 3.0798 1.3444 -0.1083 28 1 1.5611 1.9273 -0.8309 29 1 1.9899 4.8548 2.8241 30 1 3.0797 -0.6611 -1.1756 31 1 1.5612 -0.3873 -2.0627 32 1 2.9075 -6.0497 0.6553 33 1 3.9322 -4.7383 0.8855 34 1 1.3169 -6.8479 -0.0080 35 1 -0.7880 -7.6496 -0.9480 36 1 -2.2961 -6.1187 -2.1379 37 1 -1.7279 -3.7632 -2.4088 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083217806.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:14 Heat of formation + Delta-G solvation = 55.171901 kcal Electronic energy + Delta-G solvation = -20085.694877 eV Core-core repulsion = 17055.103339 eV Total energy + Delta-G solvation = -3030.591538 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.28150 -39.09590 -38.03118 -36.85734 -34.64330 -33.25642 -31.97995 -31.44978 -29.82957 -28.67329 -26.08325 -25.17839 -23.68509 -22.80959 -22.01940 -19.79659 -19.32429 -18.84663 -17.98751 -16.96103 -16.88735 -16.46390 -16.07730 -15.91747 -15.58868 -15.55460 -15.01047 -14.75705 -14.45632 -13.80682 -13.53877 -13.42410 -13.26982 -13.12727 -12.71666 -12.63598 -12.53025 -12.46982 -12.19663 -11.76933 -11.56239 -11.39224 -10.77862 -10.53524 -10.13788 -10.10649 -9.14296 -8.81730 -8.26920 -6.30935 -0.48901 -0.17687 1.02458 1.37358 1.39436 1.50946 2.05798 2.25686 2.36908 2.91326 3.06085 3.13303 3.34385 3.50257 3.64854 3.78487 4.07492 4.28985 4.31241 4.40091 4.46012 4.52514 4.61133 4.66856 4.86581 4.89881 4.98864 5.06645 5.11552 5.25080 5.39289 5.47995 5.51535 5.75777 5.93323 6.05348 6.11052 6.24398 6.59154 6.73456 6.73957 7.32126 7.41241 8.89932 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031779 B = 0.004049 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.864923 B = 6912.883067 C = 7256.768468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.538 5.538 3 C 0.174 3.826 4 C -0.518 4.518 5 H 0.033 0.967 6 C 0.009 3.991 7 N -0.949 5.949 8 Si 0.950 3.050 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.246 1.246 12 C 0.121 3.879 13 C 0.376 3.624 14 N -0.608 5.608 15 C 0.464 3.536 16 N -0.799 5.799 17 C -0.218 4.218 18 C -0.068 4.068 19 C -0.133 4.133 20 C -0.063 4.063 21 C -0.135 4.135 22 C 0.154 3.846 23 N -0.570 5.570 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.025 0.975 27 H 0.037 0.963 28 H -0.006 1.006 29 H 0.268 0.732 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.427 0.573 33 H 0.418 0.582 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.164 0.836 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.265 -26.128 -10.400 28.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.263 5.263 3 C 0.048 3.952 4 C -0.556 4.556 5 H 0.051 0.949 6 C -0.188 4.188 7 N -0.589 5.589 8 Si 0.773 3.227 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.169 1.169 12 C -0.009 4.009 13 C 0.105 3.895 14 N -0.337 5.337 15 C 0.206 3.794 16 N -0.345 5.345 17 C -0.227 4.227 18 C -0.088 4.088 19 C -0.151 4.151 20 C -0.084 4.084 21 C -0.154 4.154 22 C 0.029 3.971 23 N -0.291 5.291 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.012 0.988 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.262 0.738 33 H 0.250 0.750 34 H 0.178 0.822 35 H 0.185 0.815 36 H 0.182 0.818 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.967 -25.244 -10.050 27.188 hybrid contribution 0.090 0.447 -0.357 0.579 sum -0.877 -24.797 -10.407 26.907 Atomic orbital electron populations 1.22058 0.87454 1.00184 0.99756 1.61757 1.08281 1.15302 1.40979 1.19983 0.95605 0.84614 0.95025 1.21199 1.35068 0.97632 1.01686 0.94853 1.25851 0.96891 0.98236 0.97865 1.70052 1.48572 1.13901 1.26423 0.85677 0.79242 0.78719 0.79099 1.19146 1.20519 1.16933 1.20779 1.01142 0.85953 0.93002 1.22438 0.85025 0.95643 0.86403 1.67684 1.36897 1.04231 1.24899 1.18931 0.87039 0.87932 0.85458 1.42008 1.22617 1.11740 1.58121 1.19219 0.97210 0.98182 1.08047 1.21096 0.98000 0.91945 0.97803 1.21335 0.93761 1.01887 0.98131 1.21436 1.00228 0.91769 0.94942 1.20888 0.94937 0.97388 1.02199 1.19275 0.95300 0.88496 0.93995 1.68645 1.18247 1.15761 1.26469 0.92585 0.93236 0.95667 0.94516 0.98834 0.92351 0.88534 0.92271 0.73811 0.74995 0.82201 0.81463 0.81819 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.44 9.09 127.69 1.16 3.60 16 2 N -0.54 -25.30 4.74 -931.65 -4.42 -29.72 16 3 C 0.17 8.90 3.79 85.56 0.32 9.22 16 4 C -0.52 -31.45 9.01 25.60 0.23 -31.22 16 5 H 0.03 2.27 7.37 -2.91 -0.02 2.25 16 6 C 0.01 0.52 5.47 84.65 0.46 0.99 16 7 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 8 Si 0.95 45.06 27.47 68.60 1.88 46.94 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 11 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 12 C 0.12 4.79 5.36 85.56 0.46 5.25 16 13 C 0.38 14.32 6.42 138.76 0.89 15.21 16 14 N -0.61 -21.49 10.31 -184.59 -1.90 -23.39 16 15 C 0.46 12.51 7.87 134.01 1.05 13.56 16 16 N -0.80 -12.71 8.98 -54.40 -0.49 -13.20 16 17 C -0.22 -5.49 5.75 -21.20 -0.12 -5.61 16 18 C -0.07 -1.03 9.54 22.25 0.21 -0.82 16 19 C -0.13 -1.58 9.96 22.07 0.22 -1.36 16 20 C -0.06 -0.93 9.95 22.06 0.22 -0.71 16 21 C -0.13 -3.11 10.01 22.29 0.22 -2.89 16 22 C 0.15 4.66 6.61 40.08 0.27 4.92 16 23 N -0.57 -20.73 9.19 -181.80 -1.67 -22.40 16 24 H 0.06 2.43 6.54 -2.39 -0.02 2.41 16 25 H 0.05 2.47 6.76 -2.39 -0.02 2.45 16 26 H 0.02 1.06 8.14 -2.39 -0.02 1.05 16 27 H 0.04 1.83 6.99 -2.39 -0.02 1.81 16 28 H -0.01 -0.30 7.55 -2.39 -0.02 -0.31 16 29 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 30 H 0.10 3.66 7.93 -2.39 -0.02 3.64 16 31 H 0.06 2.22 8.12 -2.39 -0.02 2.20 16 32 H 0.43 3.30 7.09 -92.71 -0.66 2.64 16 33 H 0.42 6.16 8.95 -92.71 -0.83 5.33 16 34 H 0.16 1.09 6.59 -2.91 -0.02 1.07 16 35 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 36 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 37 H 0.14 3.01 8.06 -2.92 -0.02 2.98 16 Total: -1.00 -80.36 308.74 -1.13 -81.48 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -0.43 Total: 10.78 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 5.60 Total: 10.15 kcal Atomic # 7 Polarization: -141.17 SS G_CDS: -8.18 Total: -149.35 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -80.36 -1.13 -81.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217806.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.657 kcal (2) G-P(sol) polarization free energy of solvation -80.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds