Wall clock time and date at job start Mon Mar 30 2020 00:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81399 * 103.00117 * 2 1 4 4 H 1.08999 * 109.47002 * 54.99925 * 3 2 1 5 5 C 1.52998 * 109.47171 * 295.00386 * 3 2 1 6 6 C 1.50699 * 109.47211 * 174.99805 * 3 2 1 7 7 O 1.21287 * 119.99678 * 25.00307 * 6 3 2 8 8 N 1.34774 * 120.00305 * 204.99866 * 6 3 2 9 9 C 1.46924 * 120.62693 * 359.72525 * 8 6 3 10 10 C 1.52762 * 109.00815 * 233.58112 * 9 8 6 11 11 C 1.53040 * 109.38270 * 305.58939 * 10 9 8 12 12 N 1.46498 * 109.46211 * 181.25720 * 11 10 9 13 13 C 1.36943 * 119.99563 * 84.93053 * 12 11 10 14 14 H 1.07994 * 120.00406 * 359.97438 * 13 12 11 15 15 C 1.38817 * 119.99746 * 180.02562 * 13 12 11 16 16 N 1.31627 * 119.99930 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00198 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47253 * 89.99803 * 17 15 13 19 19 H 1.48500 * 109.47499 * 210.00168 * 17 15 13 20 20 H 1.48508 * 109.46914 * 330.00059 * 17 15 13 21 21 C 1.53044 * 109.53882 * 61.23936 * 11 10 9 22 22 C 1.46920 * 120.63052 * 180.02562 * 8 6 3 23 23 H 1.09002 * 109.47124 * 299.99830 * 1 2 3 24 24 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47147 * 59.99914 * 1 2 3 26 26 H 1.08995 * 109.47152 * 179.97438 * 5 3 2 27 27 H 1.09009 * 109.46818 * 299.99742 * 5 3 2 28 28 H 1.08997 * 109.47420 * 59.99782 * 5 3 2 29 29 H 1.09001 * 109.58969 * 353.41827 * 9 8 6 30 30 H 1.09001 * 109.58640 * 113.84156 * 9 8 6 31 31 H 1.08998 * 109.56483 * 185.55365 * 10 9 8 32 32 H 1.08998 * 109.36149 * 65.50031 * 10 9 8 33 33 H 1.09000 * 109.46115 * 301.22056 * 11 10 9 34 34 H 0.97000 * 120.00291 * 264.93365 * 12 11 10 35 35 H 0.96997 * 119.99543 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.49816 * 178.68033 * 21 11 10 37 37 H 1.09001 * 109.52432 * 58.60062 * 21 11 10 38 38 H 1.09000 * 109.58888 * 246.15433 * 22 8 6 39 39 H 1.09001 * 109.58813 * 6.44283 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 3.7143 1.9385 0.1239 7 8 4.4585 1.0530 -0.2409 8 7 4.2217 3.0755 0.6399 9 6 3.3331 4.1595 1.0804 10 6 3.7544 5.4578 0.3946 11 6 5.2394 5.7144 0.6611 12 7 5.6380 6.9746 0.0293 13 6 5.4483 8.1605 0.6873 14 1 5.0044 8.1668 1.6718 15 6 5.8256 9.3546 0.0885 16 7 6.3652 9.3471 -1.1121 17 14 5.5675 10.9722 0.9863 18 1 6.7715 11.2861 1.7969 19 1 5.3401 12.0565 -0.0026 20 1 4.3856 10.8600 1.8784 21 6 6.0694 4.5676 0.0795 22 6 5.6742 3.2571 0.7665 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.9876 3.4637 -1.3071 27 1 2.2354 1.9149 -2.1492 28 1 0.6636 2.2779 -1.3968 29 1 2.3045 3.9217 0.8094 30 1 3.4102 4.2787 2.1611 31 1 3.1656 6.2863 0.7884 32 1 3.5872 5.3702 -0.6789 33 1 5.4099 5.7774 1.7358 34 1 6.0364 6.9690 -0.8552 35 1 6.6292 10.1815 -1.5303 36 1 7.1282 4.7625 0.2491 37 1 5.8810 4.4881 -0.9911 38 1 5.9464 3.3011 1.8210 39 1 6.1896 2.4229 0.2905 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989968029.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:29 Heat of formation + Delta-G solvation = -25.972884 kcal Electronic energy + Delta-G solvation = -19352.975080 eV Core-core repulsion = 16422.016040 eV Total energy + Delta-G solvation = -2930.959040 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.20552 -37.44593 -34.61672 -33.60306 -31.91853 -30.74097 -29.31233 -28.99374 -25.54173 -24.28004 -23.06634 -22.43045 -20.47503 -18.90126 -17.51391 -17.08944 -16.77709 -15.42815 -15.28838 -14.88490 -14.57918 -14.17399 -13.83999 -13.80054 -13.58595 -13.50853 -13.35922 -13.01195 -12.64329 -12.28452 -12.08056 -11.99770 -11.84375 -11.61593 -11.01814 -10.91589 -10.86519 -10.54009 -10.27310 -10.04851 -9.88811 -9.76349 -9.69562 -8.95841 -8.56947 -7.85010 -7.03060 -5.82212 -3.11804 1.27078 2.29310 2.61080 3.04641 3.39121 3.44191 3.46115 4.28618 4.53173 4.60055 4.71677 4.85426 4.88088 5.01787 5.21026 5.28507 5.30908 5.34956 5.39970 5.48551 5.49497 5.56757 5.67505 5.84695 5.89540 5.95936 6.17620 6.30507 6.33483 6.45162 6.54887 6.83004 6.97485 7.39861 7.63661 8.12501 8.35941 9.47220 10.04382 10.39002 11.40245 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.036471 B = 0.003812 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.542642 B = 7343.573297 C = 7703.602029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.195 6.195 3 C -0.091 4.091 4 H 0.108 0.892 5 C -0.144 4.144 6 C 0.535 3.465 7 O -0.529 6.529 8 N -0.600 5.600 9 C 0.104 3.896 10 C -0.151 4.151 11 C 0.179 3.821 12 N -0.724 5.724 13 C -0.242 4.242 14 H 0.070 0.930 15 C -0.012 4.012 16 N -0.932 5.932 17 Si 0.906 3.094 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.139 4.139 22 C 0.117 3.883 23 H 0.075 0.925 24 H 0.102 0.898 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.353 -15.297 3.320 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.030 5.970 3 C -0.223 4.223 4 H 0.126 0.874 5 C -0.203 4.203 6 C 0.321 3.679 7 O -0.405 6.405 8 N -0.333 5.333 9 C -0.020 4.020 10 C -0.192 4.192 11 C 0.069 3.931 12 N -0.364 5.364 13 C -0.373 4.373 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.580 5.580 17 Si 0.737 3.263 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.178 4.178 22 C -0.005 4.005 23 H 0.094 0.906 24 H 0.121 0.879 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.297 -16.478 3.250 19.700 hybrid contribution -1.010 2.220 0.186 2.446 sum -11.307 -14.258 3.436 18.519 Atomic orbital electron populations 1.23537 0.95701 1.06540 1.04947 1.87359 1.04870 1.06853 1.97872 1.23382 0.97745 0.97627 1.03559 0.87408 1.22019 1.01660 1.01719 0.94900 1.19575 0.88649 0.82186 0.77496 1.90714 1.60166 1.40892 1.48762 1.48069 1.07836 1.15836 1.61592 1.21869 0.93060 0.87551 0.99481 1.22611 1.01304 0.94769 1.00557 1.20159 0.90462 0.86167 0.96348 1.42437 1.73675 1.00370 1.19942 1.19228 1.34175 0.84442 0.99424 0.91160 1.24759 1.01565 0.97778 0.96766 1.69666 1.47459 1.26135 1.14709 0.86206 0.77746 0.83815 0.78489 1.21690 1.21784 1.20761 1.22205 1.01101 0.93950 1.00544 1.21645 0.79141 0.98868 1.00884 0.90567 0.87897 0.90342 0.90623 0.90536 0.91371 0.90583 0.91233 0.90494 0.92158 0.93351 0.78234 0.93455 0.90410 0.91801 0.91375 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 10.45 101.05 1.06 0.06 16 2 S -0.20 -2.29 21.10 -107.50 -2.27 -4.56 16 3 C -0.09 -1.03 2.32 -27.88 -0.06 -1.10 16 4 H 0.11 1.01 6.50 -51.92 -0.34 0.67 16 5 C -0.14 -1.43 8.89 37.16 0.33 -1.10 16 6 C 0.54 7.80 6.82 -10.99 -0.07 7.73 16 7 O -0.53 -9.53 15.55 5.55 0.09 -9.44 16 8 N -0.60 -8.25 2.98 -173.06 -0.52 -8.76 16 9 C 0.10 1.27 6.02 -3.93 -0.02 1.25 16 10 C -0.15 -2.39 5.64 -26.83 -0.15 -2.54 16 11 C 0.18 3.30 2.73 -67.89 -0.19 3.11 16 12 N -0.72 -17.36 5.12 -53.38 -0.27 -17.63 16 13 C -0.24 -6.43 9.93 -15.05 -0.15 -6.58 16 14 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 16 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 17 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.14 -2.24 5.55 -26.63 -0.15 -2.39 16 22 C 0.12 1.66 6.43 -3.73 -0.02 1.64 16 23 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 24 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 25 H 0.08 0.50 7.14 -51.92 -0.37 0.13 16 26 H 0.07 0.77 7.45 -51.93 -0.39 0.38 16 27 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 28 H 0.07 0.53 6.92 -51.93 -0.36 0.17 16 29 H 0.08 0.76 4.98 -51.93 -0.26 0.50 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.33 7.00 -51.93 -0.36 0.96 16 LS Contribution 324.27 15.07 4.89 4.89 Total: -1.00 -31.52 324.27 -8.08 -39.60 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.17 Total: 6.38 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 0.47 Total: -0.37 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.06 Total: -53.27 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -2.27 Total: -4.56 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.52 -8.08 -39.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989968029.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.624 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds