Wall clock time and date at job start Mon Mar 30 2020 00:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81399 * 103.00117 * 2 1 4 4 H 1.08999 * 109.47002 * 54.99925 * 3 2 1 5 5 C 1.52998 * 109.47171 * 295.00386 * 3 2 1 6 6 C 1.50699 * 109.47211 * 174.99805 * 3 2 1 7 7 O 1.21287 * 119.99678 * 25.00307 * 6 3 2 8 8 N 1.34774 * 120.00305 * 204.99866 * 6 3 2 9 9 C 1.46924 * 120.62693 * 359.72525 * 8 6 3 10 10 C 1.52762 * 109.00815 * 233.58112 * 9 8 6 11 11 C 1.53040 * 109.38270 * 305.58939 * 10 9 8 12 12 N 1.46498 * 109.46211 * 181.25720 * 11 10 9 13 13 C 1.36943 * 119.99563 * 84.93053 * 12 11 10 14 14 H 1.07994 * 120.00406 * 359.97438 * 13 12 11 15 15 C 1.38817 * 119.99746 * 180.02562 * 13 12 11 16 16 N 1.31627 * 119.99930 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00198 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47253 * 89.99803 * 17 15 13 19 19 H 1.48500 * 109.47499 * 210.00168 * 17 15 13 20 20 H 1.48508 * 109.46914 * 330.00059 * 17 15 13 21 21 C 1.53044 * 109.53882 * 61.23936 * 11 10 9 22 22 C 1.46920 * 120.63052 * 180.02562 * 8 6 3 23 23 H 1.09002 * 109.47124 * 299.99830 * 1 2 3 24 24 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47147 * 59.99914 * 1 2 3 26 26 H 1.08995 * 109.47152 * 179.97438 * 5 3 2 27 27 H 1.09009 * 109.46818 * 299.99742 * 5 3 2 28 28 H 1.08997 * 109.47420 * 59.99782 * 5 3 2 29 29 H 1.09001 * 109.58969 * 353.41827 * 9 8 6 30 30 H 1.09001 * 109.58640 * 113.84156 * 9 8 6 31 31 H 1.08998 * 109.56483 * 185.55365 * 10 9 8 32 32 H 1.08998 * 109.36149 * 65.50031 * 10 9 8 33 33 H 1.09000 * 109.46115 * 301.22056 * 11 10 9 34 34 H 0.97000 * 120.00291 * 264.93365 * 12 11 10 35 35 H 0.96997 * 119.99543 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.49816 * 178.68033 * 21 11 10 37 37 H 1.09001 * 109.52432 * 58.60062 * 21 11 10 38 38 H 1.09000 * 109.58888 * 246.15433 * 22 8 6 39 39 H 1.09001 * 109.58813 * 6.44283 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 3.7143 1.9385 0.1239 7 8 4.4585 1.0530 -0.2409 8 7 4.2217 3.0755 0.6399 9 6 3.3331 4.1595 1.0804 10 6 3.7544 5.4578 0.3946 11 6 5.2394 5.7144 0.6611 12 7 5.6380 6.9746 0.0293 13 6 5.4483 8.1605 0.6873 14 1 5.0044 8.1668 1.6718 15 6 5.8256 9.3546 0.0885 16 7 6.3652 9.3471 -1.1121 17 14 5.5675 10.9722 0.9863 18 1 6.7715 11.2861 1.7969 19 1 5.3401 12.0565 -0.0026 20 1 4.3856 10.8600 1.8784 21 6 6.0694 4.5676 0.0795 22 6 5.6742 3.2571 0.7665 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.9876 3.4637 -1.3071 27 1 2.2354 1.9149 -2.1492 28 1 0.6636 2.2779 -1.3968 29 1 2.3045 3.9217 0.8094 30 1 3.4102 4.2787 2.1611 31 1 3.1656 6.2863 0.7884 32 1 3.5872 5.3702 -0.6789 33 1 5.4099 5.7774 1.7358 34 1 6.0364 6.9690 -0.8552 35 1 6.6292 10.1815 -1.5303 36 1 7.1282 4.7625 0.2491 37 1 5.8810 4.4881 -0.9911 38 1 5.9464 3.3011 1.8210 39 1 6.1896 2.4229 0.2905 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989968029.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:28 Heat of formation + Delta-G solvation = -46.164600 kcal Electronic energy + Delta-G solvation = -19353.850659 eV Core-core repulsion = 16422.016040 eV Total energy + Delta-G solvation = -2931.834618 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.36201 -38.79377 -36.19436 -34.70567 -33.57761 -31.91671 -30.97429 -29.59961 -26.90851 -25.60293 -24.41796 -23.80817 -21.80897 -20.14513 -19.04867 -18.56301 -17.76509 -16.73451 -16.44543 -16.40114 -15.56084 -15.49445 -15.25352 -15.10450 -14.89482 -14.53342 -14.30125 -14.00806 -13.76202 -13.32888 -13.28322 -13.08360 -12.94120 -12.84738 -12.69297 -12.61476 -12.18924 -12.16168 -11.99918 -11.70174 -11.31833 -10.99783 -10.88321 -10.72452 -9.74564 -9.00213 -8.71389 -7.92386 -5.21223 0.45593 1.45335 1.49431 1.50614 1.58719 1.65173 1.97683 2.57740 3.29687 3.41321 3.76276 3.80559 3.83043 3.96621 4.05393 4.16746 4.33596 4.37123 4.39069 4.40756 4.57516 4.59428 4.65278 4.74251 4.81697 4.84690 4.93867 5.00885 5.05933 5.11390 5.28234 5.48302 5.54409 5.60891 6.28353 6.30379 7.01435 7.35332 8.11086 8.33781 9.31300 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.036471 B = 0.003812 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.542642 B = 7343.573297 C = 7703.602029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.265 6.265 3 C -0.078 4.078 4 H 0.135 0.865 5 C -0.140 4.140 6 C 0.529 3.471 7 O -0.569 6.569 8 N -0.600 5.600 9 C 0.111 3.889 10 C -0.140 4.140 11 C 0.172 3.828 12 N -0.739 5.739 13 C -0.234 4.234 14 H 0.081 0.919 15 C -0.078 4.078 16 N -0.972 5.972 17 Si 0.970 3.030 18 H -0.290 1.290 19 H -0.300 1.300 20 H -0.265 1.265 21 C -0.127 4.127 22 C 0.123 3.877 23 H 0.092 0.908 24 H 0.114 0.886 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.370 0.630 35 H 0.249 0.751 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.087 0.913 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.781 -15.685 4.960 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.040 6.040 3 C -0.209 4.209 4 H 0.152 0.848 5 C -0.199 4.199 6 C 0.317 3.683 7 O -0.449 6.449 8 N -0.332 5.332 9 C -0.012 4.012 10 C -0.181 4.181 11 C 0.064 3.936 12 N -0.378 5.378 13 C -0.366 4.366 14 H 0.099 0.901 15 C -0.270 4.270 16 N -0.624 5.624 17 Si 0.800 3.200 18 H -0.218 1.218 19 H -0.227 1.227 20 H -0.190 1.190 21 C -0.166 4.166 22 C 0.000 4.000 23 H 0.111 0.889 24 H 0.132 0.868 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.201 0.799 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.766 -16.895 4.939 21.744 hybrid contribution -0.272 2.241 -0.313 2.279 sum -13.038 -14.654 4.625 20.153 Atomic orbital electron populations 1.23590 0.91041 1.07777 1.06383 1.87634 1.10043 1.08211 1.98073 1.23325 0.95201 0.97284 1.05131 0.84771 1.22018 1.03240 1.01145 0.93516 1.20194 0.90101 0.81611 0.76425 1.90695 1.61537 1.42301 1.50342 1.48146 1.07703 1.16141 1.61254 1.21928 0.94147 0.84955 1.00129 1.22372 0.98780 0.96687 1.00239 1.20425 0.92493 0.84623 0.96045 1.42672 1.73942 1.01703 1.19462 1.19642 1.32100 0.85345 0.99510 0.90138 1.25553 1.02611 1.01153 0.97711 1.69830 1.49698 1.26325 1.16500 0.85178 0.77973 0.79616 0.77234 1.21760 1.22682 1.18993 1.22048 1.00517 0.94338 0.99732 1.21533 0.79873 0.97041 1.01539 0.88897 0.86784 0.89030 0.90651 0.92354 0.88550 0.87448 0.89218 0.91122 0.93373 0.93104 0.79890 0.94220 0.90958 0.93237 0.89507 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 10.45 113.37 1.19 -0.14 16 2 S -0.26 -5.78 21.10 -56.49 -1.19 -6.97 16 3 C -0.08 -1.57 2.32 29.85 0.07 -1.50 16 4 H 0.13 1.94 6.50 -2.39 -0.02 1.92 16 5 C -0.14 -2.44 8.89 71.98 0.64 -1.80 16 6 C 0.53 14.70 6.82 87.66 0.60 15.30 16 7 O -0.57 -20.52 15.55 -3.05 -0.05 -20.56 16 8 N -0.60 -15.34 2.98 -819.82 -2.44 -17.78 16 9 C 0.11 2.36 6.02 86.22 0.52 2.87 16 10 C -0.14 -4.17 5.64 30.53 0.17 -4.00 16 11 C 0.17 6.21 2.73 45.02 0.12 6.33 16 12 N -0.74 -35.59 5.12 -322.81 -1.65 -37.24 16 13 C -0.23 -12.38 9.93 84.03 0.83 -11.54 16 14 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 15 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 16 N -0.97 -58.80 13.06 21.65 0.28 -58.52 16 17 Si 0.97 44.82 29.55 68.60 2.03 46.85 16 18 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 19 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 21 C -0.13 -4.09 5.55 30.66 0.17 -3.92 16 22 C 0.12 3.37 6.43 86.35 0.56 3.92 16 23 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 24 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.09 0.80 7.14 -2.39 -0.02 0.78 16 26 H 0.07 1.33 7.45 -2.39 -0.02 1.31 16 27 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.10 1.13 6.92 -2.39 -0.02 1.12 16 29 H 0.11 1.66 4.98 -2.39 -0.01 1.65 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 34 H 0.37 19.67 7.80 -92.71 -0.72 18.94 16 35 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 36 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.08 2.41 7.00 -2.39 -0.02 2.39 16 Total: -1.00 -69.66 324.27 2.62 -67.03 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.31 Total: 25.58 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 5.33 Total: 1.62 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -3.81 Total: -113.55 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.05 Total: -20.56 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: -5.78 SS G_CDS: -1.19 Total: -6.97 kcal Total: -69.66 2.62 -67.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989968029.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.870 kcal (2) G-P(sol) polarization free energy of solvation -69.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds