Wall clock time and date at job start Mon Mar 30 2020 01:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81399 * 103.00249 * 2 1 4 4 C 1.50698 * 109.47102 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99808 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00023 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63255 * 179.97438 * 6 4 3 8 8 C 1.53195 * 108.89273 * 126.34238 * 7 6 4 9 9 C 1.53346 * 109.14901 * 54.57640 * 8 7 6 10 10 C 1.53004 * 109.41904 * 178.67276 * 9 8 7 11 11 N 1.46500 * 109.47150 * 295.13157 * 10 9 8 12 12 C 1.36934 * 119.99724 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00570 * 359.97438 * 12 11 10 14 14 C 1.38817 * 119.99789 * 179.97438 * 12 11 10 15 15 N 1.31619 * 119.99799 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 120.00105 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.46875 * 89.99764 * 16 14 12 18 18 H 1.48496 * 109.47100 * 210.00231 * 16 14 12 19 19 H 1.48499 * 109.46830 * 329.99930 * 16 14 12 20 20 C 1.53034 * 109.61010 * 298.71225 * 9 8 7 21 21 C 1.46933 * 120.62741 * 0.02562 * 6 4 3 22 22 H 1.09004 * 109.47164 * 60.00258 * 1 2 3 23 23 H 1.09004 * 109.47236 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47064 * 299.99917 * 1 2 3 25 25 H 1.09001 * 109.46570 * 59.99766 * 3 2 1 26 26 H 1.09001 * 109.47092 * 300.00014 * 3 2 1 27 27 H 1.09002 * 109.58751 * 246.20189 * 7 6 4 28 28 H 1.08996 * 109.58750 * 6.48373 * 7 6 4 29 29 H 1.08997 * 109.49914 * 174.65962 * 8 7 6 30 30 H 1.09002 * 109.49585 * 294.75599 * 8 7 6 31 31 H 1.09001 * 109.42242 * 58.75065 * 9 8 7 32 32 H 1.09001 * 109.46592 * 55.13132 * 10 9 8 33 33 H 1.08997 * 109.47133 * 175.12697 * 10 9 8 34 34 H 0.96999 * 119.99704 * 359.97438 * 11 10 9 35 35 H 0.97003 * 119.99660 * 180.02562 * 15 14 12 36 36 H 1.08994 * 109.50232 * 301.42239 * 20 9 8 37 37 H 1.09007 * 109.52628 * 181.33900 * 20 9 8 38 38 H 1.08994 * 109.58580 * 353.38021 * 21 6 4 39 39 H 1.09006 * 109.57831 * 113.65514 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 0.0006 5 8 4.4403 0.9619 0.0006 6 7 4.2576 3.1729 0.0013 7 6 5.7156 3.3546 0.0025 8 6 6.1025 4.2684 -1.1646 9 6 5.3035 5.5736 -1.0678 10 6 5.7095 6.5047 -2.2120 11 7 7.1129 6.8928 -2.0513 12 6 7.7010 7.7281 -2.9631 13 1 7.1304 8.1005 -3.8011 14 6 9.0307 8.0963 -2.8105 15 7 9.5962 8.8988 -3.6873 16 14 10.0180 7.4517 -1.3616 17 1 10.6735 6.1737 -1.7387 18 1 11.0538 8.4474 -0.9862 19 1 9.1115 7.2216 -0.2081 20 6 3.8071 5.2682 -1.1655 21 6 3.3973 4.3641 0.0019 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8032 2.2370 0.8900 26 1 1.8032 2.2371 -0.8900 27 1 6.0262 3.8108 0.9424 28 1 6.2044 2.3873 -0.1133 29 1 7.1694 4.4867 -1.1175 30 1 5.8737 3.7713 -2.1073 31 1 5.5137 6.0575 -0.1140 32 1 5.5820 5.9881 -3.1633 33 1 5.0819 7.3957 -2.1955 34 1 7.6255 6.5581 -1.2989 35 1 10.5255 9.1557 -3.5808 36 1 3.5999 4.7619 -2.1082 37 1 3.2415 6.1990 -1.1204 38 1 2.3565 4.0630 -0.1166 39 1 3.5175 4.9010 0.9429 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204384629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:30 Heat of formation + Delta-G solvation = -25.383803 kcal Electronic energy + Delta-G solvation = -18960.678315 eV Core-core repulsion = 16029.744820 eV Total energy + Delta-G solvation = -2930.933496 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.33672 -37.87012 -35.18349 -32.99408 -31.73966 -30.94921 -29.90280 -29.02820 -26.89475 -23.80315 -23.25136 -21.69411 -20.52944 -19.22451 -17.79064 -17.25067 -16.79465 -15.99392 -15.62353 -14.74107 -14.55408 -14.40059 -14.17046 -14.10219 -13.77706 -13.66920 -13.49832 -12.92659 -12.82959 -12.66242 -12.52575 -12.25929 -11.97297 -11.48812 -11.26047 -10.91623 -10.59894 -10.53108 -10.33458 -10.27364 -10.08438 -10.01204 -9.59644 -8.91191 -8.80817 -7.97410 -7.24402 -5.78158 -3.13633 1.13194 2.19837 2.36231 2.80983 3.35654 3.38244 3.44221 4.13212 4.54661 4.57666 4.59848 4.74350 4.76476 4.77617 4.80248 4.88910 5.06656 5.19195 5.26682 5.31828 5.41478 5.53244 5.61023 5.72080 5.75902 5.90070 5.93873 6.08461 6.16819 6.33786 6.47212 6.63669 6.75932 7.14830 7.91234 7.98082 8.40981 9.20039 9.92372 10.12120 11.40374 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.042742 B = 0.003451 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.930234 B = 8112.033842 C = 8462.591513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.187 6.187 3 C -0.126 4.126 4 C 0.531 3.469 5 O -0.523 6.523 6 N -0.605 5.605 7 C 0.111 3.889 8 C -0.126 4.126 9 C -0.099 4.099 10 C 0.163 3.837 11 N -0.755 5.755 12 C -0.244 4.244 13 H 0.089 0.911 14 C 0.004 3.996 15 N -0.935 5.935 16 Si 0.884 3.116 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.277 1.277 20 C -0.127 4.127 21 C 0.106 3.894 22 H 0.077 0.923 23 H 0.104 0.896 24 H 0.076 0.924 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.920 -13.540 10.174 26.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.037 5.963 3 C -0.277 4.277 4 C 0.316 3.684 5 O -0.398 6.398 6 N -0.339 5.339 7 C -0.011 4.011 8 C -0.164 4.164 9 C -0.118 4.118 10 C 0.036 3.964 11 N -0.401 5.401 12 C -0.374 4.374 13 H 0.107 0.893 14 C -0.192 4.192 15 N -0.583 5.583 16 Si 0.714 3.286 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.204 1.204 20 C -0.165 4.165 21 C -0.017 4.017 22 H 0.096 0.904 23 H 0.122 0.878 24 H 0.095 0.905 25 H 0.127 0.873 26 H 0.129 0.871 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.827 -14.779 9.973 25.929 hybrid contribution -0.116 0.944 0.933 1.332 sum -18.943 -13.834 10.905 25.868 Atomic orbital electron populations 1.23538 0.95892 1.06758 1.04874 1.87580 1.04498 1.06211 1.97999 1.23568 0.98018 0.99151 1.06934 1.19613 0.88802 0.83177 0.76760 1.90745 1.61922 1.38037 1.49142 1.48061 1.07723 1.05146 1.73005 1.21730 0.78791 1.01488 0.99066 1.22002 1.01222 0.95113 0.98079 1.21423 0.93727 0.95968 1.00650 1.20639 0.86342 0.94689 0.94758 1.42722 1.08200 1.58696 1.30510 1.19058 0.94509 1.19942 1.03904 0.89283 1.24682 0.96752 0.99562 0.98215 1.69703 1.12897 1.38931 1.36725 0.86557 0.80276 0.78529 0.83231 1.20980 1.21712 1.20352 1.21912 0.96913 0.99561 0.98151 1.21848 0.93850 0.86216 0.99767 0.90443 0.87756 0.90529 0.87299 0.87125 0.91367 0.88962 0.89966 0.91315 0.90962 0.95558 0.95562 0.80665 0.93049 0.91217 0.90230 0.90133 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 10.76 101.05 1.09 0.27 16 2 S -0.19 -1.92 21.52 -107.50 -2.31 -4.24 16 3 C -0.13 -1.08 4.77 36.00 0.17 -0.91 16 4 C 0.53 6.56 7.72 -10.99 -0.08 6.48 16 5 O -0.52 -8.60 15.28 5.56 0.08 -8.52 16 6 N -0.60 -6.77 2.97 -172.74 -0.51 -7.28 16 7 C 0.11 1.39 6.42 -3.71 -0.02 1.37 16 8 C -0.13 -1.77 5.27 -26.45 -0.14 -1.91 16 9 C -0.10 -1.36 2.19 -90.42 -0.20 -1.56 16 10 C 0.16 2.99 5.65 -4.04 -0.02 2.97 16 11 N -0.76 -17.57 5.12 -59.91 -0.31 -17.88 16 12 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 13 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 14 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 15 N -0.93 -29.43 13.97 55.49 0.78 -28.65 16 16 Si 0.88 22.00 27.74 -169.99 -4.71 17.29 16 17 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 19 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 20 C -0.13 -1.28 5.37 -26.59 -0.14 -1.43 16 21 C 0.11 0.89 6.34 -3.68 -0.02 0.86 16 22 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 23 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 24 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 25 H 0.11 0.68 7.94 -51.92 -0.41 0.27 16 26 H 0.11 0.75 7.69 -51.92 -0.40 0.35 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 29 H 0.08 1.29 7.16 -51.93 -0.37 0.91 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.36 8.14 4.71 -40.82 -0.19 7.95 16 35 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.08 0.46 5.93 -51.93 -0.31 0.15 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 324.16 15.07 4.89 4.89 Total: -1.00 -34.25 324.16 -8.02 -42.27 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.29 Total: 3.02 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 0.37 Total: -0.90 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.05 Total: -53.81 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.08 Total: -8.52 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Atomic # 16 Polarization: -1.92 SS G_CDS: -2.31 Total: -4.24 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.25 -8.02 -42.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204384629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.886 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds