Wall clock time and date at job start Mon Mar 30 2020 01:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81399 * 103.00249 * 2 1 4 4 C 1.50698 * 109.47102 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99808 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00023 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63255 * 179.97438 * 6 4 3 8 8 C 1.53195 * 108.89273 * 126.34238 * 7 6 4 9 9 C 1.53346 * 109.14901 * 54.57640 * 8 7 6 10 10 C 1.53004 * 109.41904 * 178.67276 * 9 8 7 11 11 N 1.46500 * 109.47150 * 295.13157 * 10 9 8 12 12 C 1.36934 * 119.99724 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00570 * 359.97438 * 12 11 10 14 14 C 1.38817 * 119.99789 * 179.97438 * 12 11 10 15 15 N 1.31619 * 119.99799 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 120.00105 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.46875 * 89.99764 * 16 14 12 18 18 H 1.48496 * 109.47100 * 210.00231 * 16 14 12 19 19 H 1.48499 * 109.46830 * 329.99930 * 16 14 12 20 20 C 1.53034 * 109.61010 * 298.71225 * 9 8 7 21 21 C 1.46933 * 120.62741 * 0.02562 * 6 4 3 22 22 H 1.09004 * 109.47164 * 60.00258 * 1 2 3 23 23 H 1.09004 * 109.47236 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47064 * 299.99917 * 1 2 3 25 25 H 1.09001 * 109.46570 * 59.99766 * 3 2 1 26 26 H 1.09001 * 109.47092 * 300.00014 * 3 2 1 27 27 H 1.09002 * 109.58751 * 246.20189 * 7 6 4 28 28 H 1.08996 * 109.58750 * 6.48373 * 7 6 4 29 29 H 1.08997 * 109.49914 * 174.65962 * 8 7 6 30 30 H 1.09002 * 109.49585 * 294.75599 * 8 7 6 31 31 H 1.09001 * 109.42242 * 58.75065 * 9 8 7 32 32 H 1.09001 * 109.46592 * 55.13132 * 10 9 8 33 33 H 1.08997 * 109.47133 * 175.12697 * 10 9 8 34 34 H 0.96999 * 119.99704 * 359.97438 * 11 10 9 35 35 H 0.97003 * 119.99660 * 180.02562 * 15 14 12 36 36 H 1.08994 * 109.50232 * 301.42239 * 20 9 8 37 37 H 1.09007 * 109.52628 * 181.33900 * 20 9 8 38 38 H 1.08994 * 109.58580 * 353.38021 * 21 6 4 39 39 H 1.09006 * 109.57831 * 113.65514 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 0.0006 5 8 4.4403 0.9619 0.0006 6 7 4.2576 3.1729 0.0013 7 6 5.7156 3.3546 0.0025 8 6 6.1025 4.2684 -1.1646 9 6 5.3035 5.5736 -1.0678 10 6 5.7095 6.5047 -2.2120 11 7 7.1129 6.8928 -2.0513 12 6 7.7010 7.7281 -2.9631 13 1 7.1304 8.1005 -3.8011 14 6 9.0307 8.0963 -2.8105 15 7 9.5962 8.8988 -3.6873 16 14 10.0180 7.4517 -1.3616 17 1 10.6735 6.1737 -1.7387 18 1 11.0538 8.4474 -0.9862 19 1 9.1115 7.2216 -0.2081 20 6 3.8071 5.2682 -1.1655 21 6 3.3973 4.3641 0.0019 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8032 2.2370 0.8900 26 1 1.8032 2.2371 -0.8900 27 1 6.0262 3.8108 0.9424 28 1 6.2044 2.3873 -0.1133 29 1 7.1694 4.4867 -1.1175 30 1 5.8737 3.7713 -2.1073 31 1 5.5137 6.0575 -0.1140 32 1 5.5820 5.9881 -3.1633 33 1 5.0819 7.3957 -2.1955 34 1 7.6255 6.5581 -1.2989 35 1 10.5255 9.1557 -3.5808 36 1 3.5999 4.7619 -2.1082 37 1 3.2415 6.1990 -1.1204 38 1 2.3565 4.0630 -0.1166 39 1 3.5175 4.9010 0.9429 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204384629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:29 Heat of formation + Delta-G solvation = -48.721408 kcal Electronic energy + Delta-G solvation = -18961.690310 eV Core-core repulsion = 16029.744820 eV Total energy + Delta-G solvation = -2931.945490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.26431 -38.97630 -36.71532 -34.56009 -32.92700 -32.46888 -30.72400 -29.54971 -28.27661 -25.29807 -24.25702 -23.22449 -21.68995 -20.22503 -19.61946 -18.28810 -17.60451 -16.85053 -16.60510 -16.45956 -15.97439 -15.52966 -15.18037 -14.92948 -14.88020 -14.55272 -14.43751 -14.24311 -13.98421 -13.70043 -13.43783 -13.29928 -13.23669 -12.93083 -12.80640 -12.20742 -12.18394 -11.90287 -11.69892 -11.55832 -11.40684 -11.01838 -10.96932 -10.83904 -9.72958 -9.29529 -8.70673 -8.04064 -5.37045 0.50475 1.36052 1.40269 1.47265 1.48356 1.65056 1.98002 2.47199 3.27587 3.37581 3.58069 3.81393 3.83351 3.99120 4.06445 4.15848 4.21020 4.32553 4.39416 4.40187 4.43338 4.58730 4.70853 4.75863 4.86035 4.93553 4.94528 4.98285 5.08083 5.13164 5.25124 5.50444 5.51334 5.74937 6.20429 6.30453 7.03457 7.07549 7.84427 8.03066 9.17701 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.042742 B = 0.003451 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.930234 B = 8112.033842 C = 8462.591513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.277 6.277 3 C -0.106 4.106 4 C 0.522 3.478 5 O -0.574 6.574 6 N -0.603 5.603 7 C 0.117 3.883 8 C -0.121 4.121 9 C -0.089 4.089 10 C 0.158 3.842 11 N -0.758 5.758 12 C -0.235 4.235 13 H 0.055 0.945 14 C -0.066 4.066 15 N -0.985 5.985 16 Si 0.954 3.046 17 H -0.280 1.280 18 H -0.295 1.295 19 H -0.247 1.247 20 C -0.121 4.121 21 C 0.106 3.894 22 H 0.091 0.909 23 H 0.109 0.891 24 H 0.093 0.907 25 H 0.141 0.859 26 H 0.136 0.864 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.016 0.984 33 H 0.029 0.971 34 H 0.366 0.634 35 H 0.258 0.742 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.527 -13.846 12.458 29.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.053 6.053 3 C -0.256 4.256 4 C 0.310 3.690 5 O -0.453 6.453 6 N -0.336 5.336 7 C -0.006 4.006 8 C -0.160 4.160 9 C -0.108 4.108 10 C 0.032 3.968 11 N -0.404 5.404 12 C -0.366 4.366 13 H 0.073 0.927 14 C -0.257 4.257 15 N -0.636 5.636 16 Si 0.781 3.219 17 H -0.206 1.206 18 H -0.222 1.222 19 H -0.171 1.171 20 C -0.160 4.160 21 C -0.015 4.015 22 H 0.110 0.890 23 H 0.128 0.872 24 H 0.112 0.888 25 H 0.159 0.841 26 H 0.154 0.846 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.034 0.966 33 H 0.047 0.953 34 H 0.200 0.800 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.135 0.865 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.506 -15.087 12.278 28.998 hybrid contribution 0.598 1.064 0.114 1.226 sum -20.908 -14.023 12.392 28.060 Atomic orbital electron populations 1.23543 0.91142 1.07662 1.06389 1.87928 1.09798 1.09296 1.98277 1.23511 0.95038 0.97496 1.09564 1.20295 0.90356 0.82669 0.75655 1.90727 1.63449 1.39740 1.51395 1.48159 1.07318 1.05950 1.72216 1.21539 0.80141 1.00082 0.98830 1.21904 1.00203 0.95657 0.98201 1.21343 0.96380 0.94350 0.98680 1.20847 0.83769 0.95674 0.96474 1.42746 1.10190 1.57817 1.29621 1.19052 0.94423 1.19558 1.03529 0.92721 1.25538 0.98135 1.00441 1.01622 1.69890 1.13225 1.41165 1.39321 0.85421 0.78635 0.77490 0.80356 1.20638 1.22213 1.17138 1.21889 0.94017 1.01031 0.99040 1.22101 0.95075 0.84728 0.99633 0.89031 0.87211 0.88780 0.84098 0.84605 0.89921 0.90902 0.91910 0.92738 0.90201 0.96587 0.95261 0.80038 0.93346 0.91604 0.88209 0.86477 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 10.76 113.37 1.22 0.21 16 2 S -0.28 -5.31 21.52 -56.49 -1.22 -6.52 16 3 C -0.11 -1.46 4.77 71.24 0.34 -1.12 16 4 C 0.52 11.91 7.72 87.66 0.68 12.59 16 5 O -0.57 -18.93 15.28 -3.03 -0.05 -18.98 16 6 N -0.60 -11.82 2.97 -818.81 -2.43 -14.26 16 7 C 0.12 2.76 6.42 86.36 0.55 3.31 16 8 C -0.12 -3.28 5.27 30.78 0.16 -3.11 16 9 C -0.09 -2.23 2.19 -10.66 -0.02 -2.25 16 10 C 0.16 5.65 5.65 86.38 0.49 6.13 16 11 N -0.76 -34.74 5.12 -343.45 -1.76 -36.50 16 12 C -0.23 -13.44 10.47 84.04 0.88 -12.56 16 13 H 0.05 3.44 8.06 -2.91 -0.02 3.42 16 14 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 15 N -0.99 -63.72 13.97 21.65 0.30 -63.42 16 16 Si 0.95 45.44 27.74 68.60 1.90 47.34 16 17 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 18 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 19 H -0.25 -10.41 6.52 99.48 0.65 -9.76 16 20 C -0.12 -2.00 5.37 30.69 0.16 -1.84 16 21 C 0.11 1.26 6.34 86.38 0.55 1.81 16 22 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 23 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.14 1.05 7.94 -2.39 -0.02 1.03 16 26 H 0.14 1.20 7.69 -2.39 -0.02 1.18 16 27 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 2.02 7.00 -2.39 -0.02 2.01 16 29 H 0.06 1.93 7.16 -2.39 -0.02 1.91 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.37 15.91 4.71 -92.71 -0.44 15.47 16 35 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.12 0.61 5.93 -2.39 -0.01 0.59 16 39 H 0.09 0.86 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -78.49 324.16 2.76 -75.73 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.53 Total: 16.89 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 5.48 Total: -0.29 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -3.89 Total: -114.18 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.05 Total: -18.98 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.34 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -1.22 Total: -6.52 kcal Total: -78.49 2.76 -75.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204384629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.010 kcal (2) G-P(sol) polarization free energy of solvation -78.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds