Wall clock time and date at job start Mon Mar 30 2020 01:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 113.99710 * 2 1 4 4 C 1.53005 * 109.47223 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.50117 * 54.91507 * 4 3 2 6 6 C 1.53093 * 109.50697 * 174.99659 * 4 3 2 7 7 N 1.47021 * 109.25688 * 176.78310 * 6 4 3 8 8 C 1.46895 * 110.99829 * 177.60906 * 7 6 4 9 9 C 1.50695 * 109.47491 * 293.63669 * 8 7 6 10 10 O 1.21294 * 119.99590 * 353.72629 * 9 8 7 11 11 N 1.34776 * 120.00286 * 173.72382 * 9 8 7 12 12 C 1.37102 * 119.99974 * 180.02562 * 11 9 8 13 13 H 1.07993 * 119.99872 * 359.97438 * 12 11 9 14 14 C 1.38951 * 119.99746 * 180.27617 * 12 11 9 15 15 N 1.31415 * 120.00039 * 359.71880 * 14 12 11 16 16 Si 1.86795 * 120.00138 * 179.72327 * 14 12 11 17 17 H 1.48495 * 109.47197 * 59.99415 * 16 14 12 18 18 H 1.48497 * 109.47473 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46782 * 299.99804 * 16 14 12 20 20 C 1.47015 * 110.75299 * 301.38926 * 7 6 4 21 21 C 1.53100 * 109.25741 * 58.61437 * 20 7 6 22 22 H 1.08999 * 109.53981 * 63.10925 * 21 20 7 23 23 C 1.52996 * 109.50424 * 183.21714 * 21 20 7 24 24 O 1.43012 * 109.50689 * 294.78484 * 4 3 2 25 25 H 1.09004 * 109.46787 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47433 * 299.99994 * 1 2 3 27 27 H 1.08998 * 109.47092 * 60.01093 * 1 2 3 28 28 H 1.09002 * 109.47432 * 59.99647 * 3 2 1 29 29 H 1.08998 * 109.47388 * 299.99506 * 3 2 1 30 30 H 1.09001 * 109.50544 * 56.85527 * 6 4 3 31 31 H 1.08992 * 109.54990 * 296.74179 * 6 4 3 32 32 H 1.09003 * 109.46727 * 173.63753 * 8 7 6 33 33 H 1.08998 * 109.47420 * 53.64646 * 8 7 6 34 34 H 0.96994 * 119.99813 * 359.97438 * 11 9 8 35 35 H 0.97003 * 119.99923 * 179.97438 * 15 14 12 36 36 H 1.09005 * 109.50465 * 178.54883 * 20 7 6 37 37 H 1.08995 * 109.50719 * 298.67553 * 20 7 6 38 38 H 1.08996 * 109.47333 * 179.78434 * 23 21 20 39 39 H 1.09002 * 109.47175 * 299.78366 * 23 21 20 40 40 H 1.09004 * 109.47580 * 59.78136 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8519 0.5671 -0.8399 6 6 4.1585 2.5774 -0.1252 7 7 5.6221 2.4627 -0.0465 8 6 6.2629 3.7731 -0.2201 9 6 6.0237 4.2674 -1.6234 10 8 5.4822 3.5476 -2.4358 11 7 6.4115 5.5091 -1.9759 12 6 6.1934 5.9589 -3.2525 13 1 5.7113 5.3181 -3.9758 14 6 6.5984 7.2370 -3.6174 15 7 7.1854 8.0167 -2.7373 16 14 6.3082 7.8472 -5.3589 17 1 4.8525 7.8347 -5.6517 18 1 6.8275 9.2321 -5.4912 19 1 7.0136 6.9598 -6.3182 20 6 6.0285 1.8414 1.2224 21 6 5.3866 0.4560 1.3346 22 1 5.7575 -0.1836 0.5338 23 6 5.7406 -0.1629 2.6883 24 8 3.9664 0.5839 1.2248 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.7991 3.2115 0.6853 31 1 3.8789 3.0169 -1.0826 32 1 7.3348 3.6793 -0.0456 33 1 5.8397 4.4817 0.4918 34 1 6.8442 6.0848 -1.3261 35 1 7.4684 8.9088 -2.9922 36 1 7.1138 1.7429 1.2483 37 1 5.6990 2.4637 2.0544 38 1 5.2802 -1.1475 2.7692 39 1 6.8231 -0.2600 2.7715 40 1 5.3708 0.4780 3.4888 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189439154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:20 Heat of formation + Delta-G solvation = -144.249833 kcal Electronic energy + Delta-G solvation = -21632.312658 eV Core-core repulsion = 18253.471874 eV Total energy + Delta-G solvation = -3378.840784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.12408 -39.87249 -38.63107 -36.64720 -35.76794 -34.23684 -33.28068 -31.20797 -29.22411 -28.04581 -26.83149 -26.27962 -24.01949 -23.02095 -21.45261 -21.00626 -19.87333 -18.04904 -17.75123 -17.50195 -17.12941 -16.62086 -16.46841 -16.31368 -15.99219 -15.85578 -15.61778 -15.09408 -14.84151 -14.39168 -13.96234 -13.58658 -13.47448 -13.36653 -13.12079 -12.95771 -12.84680 -12.71237 -12.43568 -12.41438 -12.23519 -12.12794 -11.95307 -11.54361 -11.42403 -10.74155 -10.67969 -10.23922 -10.00649 -9.34403 -8.46614 -5.95321 1.39559 1.41823 1.52477 2.04089 2.26300 2.45826 2.59991 2.87262 3.20228 3.36960 3.83205 3.89072 3.97084 3.99032 4.15421 4.23320 4.29118 4.37060 4.41294 4.46677 4.53352 4.53584 4.56033 4.59288 4.70679 4.74340 4.82561 4.84892 5.00284 5.10989 5.30036 5.40808 5.76472 5.94402 6.06201 6.13745 6.25155 6.60254 7.12633 7.55768 8.11446 8.70556 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.021556 B = 0.004217 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.613891 B = 6638.973619 C = 7690.021339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.075 3.925 4 C 0.106 3.894 5 H 0.053 0.947 6 C 0.034 3.966 7 N -0.534 5.534 8 C 0.059 3.941 9 C 0.440 3.560 10 O -0.614 6.614 11 N -0.572 5.572 12 C -0.333 4.333 13 H 0.079 0.921 14 C -0.011 4.011 15 N -0.921 5.921 16 Si 0.992 3.008 17 H -0.272 1.272 18 H -0.271 1.271 19 H -0.272 1.272 20 C 0.025 3.975 21 C 0.083 3.917 22 H 0.056 0.944 23 C -0.133 4.133 24 O -0.383 6.383 25 H 0.100 0.900 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.068 0.932 34 H 0.396 0.604 35 H 0.278 0.722 36 H 0.105 0.895 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.950 -11.038 11.639 17.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.002 4.002 4 C 0.048 3.952 5 H 0.071 0.929 6 C -0.094 4.094 7 N -0.259 5.259 8 C -0.072 4.072 9 C 0.227 3.773 10 O -0.500 6.500 11 N -0.210 5.210 12 C -0.463 4.463 13 H 0.097 0.903 14 C -0.211 4.211 15 N -0.561 5.561 16 Si 0.815 3.185 17 H -0.197 1.197 18 H -0.195 1.195 19 H -0.198 1.198 20 C -0.103 4.103 21 C 0.026 3.974 22 H 0.074 0.926 23 C -0.190 4.190 24 O -0.303 6.303 25 H 0.118 0.882 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.134 0.866 33 H 0.086 0.914 34 H 0.230 0.770 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.089 -11.845 10.855 17.182 hybrid contribution -0.093 1.686 -0.329 1.720 sum -6.182 -10.160 10.526 15.882 Atomic orbital electron populations 1.22959 0.79238 1.04020 1.00901 1.87879 1.21668 1.27615 1.95592 1.22438 0.90628 0.85355 1.01746 1.21912 0.93313 0.92495 0.87474 0.92863 1.22595 0.88097 0.96761 1.01952 1.61691 1.07118 1.22170 1.34921 1.21763 1.01880 0.90344 0.93210 1.20708 0.83371 0.82204 0.90978 1.90480 1.48213 1.57019 1.54324 1.41923 1.53645 1.13126 1.12287 1.19624 1.38384 0.99037 0.89232 0.90277 1.26014 0.96003 0.95598 1.03498 1.69666 1.40318 1.09862 1.36292 0.85006 0.78718 0.77461 0.77272 1.19682 1.19507 1.19776 1.22978 1.02287 0.95843 0.89173 1.22346 0.80269 0.94892 0.99939 0.92609 1.21712 1.02936 1.01036 0.93363 1.87972 1.22790 1.81519 1.38023 0.88172 0.92988 0.93256 0.91489 0.91025 0.93775 0.90571 0.86576 0.91402 0.77017 0.91292 0.87677 0.93151 0.91511 0.88705 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 11.01 113.37 1.25 1.71 16 2 O -0.41 -11.31 10.67 -144.68 -1.54 -12.86 16 3 C 0.08 2.05 5.60 71.98 0.40 2.45 16 4 C 0.11 3.36 3.09 30.63 0.09 3.45 16 5 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 6 C 0.03 1.17 4.59 86.31 0.40 1.56 16 7 N -0.53 -18.02 4.42 -899.79 -3.98 -22.00 16 8 C 0.06 2.05 5.45 85.56 0.47 2.52 16 9 C 0.44 20.91 7.35 87.66 0.64 21.55 16 10 O -0.61 -33.86 14.25 -3.07 -0.04 -33.91 16 11 N -0.57 -29.20 5.29 -306.99 -1.62 -30.83 16 12 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 13 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 14 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 15 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16 16 Si 0.99 42.72 29.55 68.60 2.03 44.74 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 20 C 0.02 0.62 4.93 86.31 0.43 1.05 16 21 C 0.08 2.09 3.43 30.63 0.10 2.20 16 22 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 23 C -0.13 -2.34 9.57 71.98 0.69 -1.65 16 24 O -0.38 -11.52 10.08 -144.68 -1.46 -12.97 16 25 H 0.10 1.51 8.14 -2.38 -0.02 1.50 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 3.11 6.10 -2.39 -0.01 3.09 16 32 H 0.12 3.49 8.04 -2.39 -0.02 3.47 16 33 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 34 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 35 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 36 H 0.11 2.22 8.09 -2.38 -0.02 2.20 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.11 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -68.81 330.24 -0.29 -69.10 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: 0.29 Total: 31.14 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 5.75 Total: 16.70 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -5.32 Total: -101.94 kcal Atomic # 8 Polarization: -56.70 SS G_CDS: -3.05 Total: -59.74 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -68.81 -0.29 -69.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189439154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.148 kcal (2) G-P(sol) polarization free energy of solvation -68.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds