Wall clock time and date at job start Mon Mar 30 2020 01:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46898 * 110.99820 * 2 1 4 4 C 1.50700 * 109.47331 * 293.95242 * 3 2 1 5 5 H 1.08002 * 119.99711 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00067 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00117 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00020 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47447 * 89.99851 * 8 6 4 10 10 H 1.48502 * 109.47315 * 210.00268 * 8 6 4 11 11 H 1.48507 * 109.47165 * 329.99790 * 8 6 4 12 12 C 1.46900 * 110.99716 * 123.95395 * 2 1 3 13 13 C 1.53002 * 109.47287 * 66.04646 * 12 2 1 14 14 H 1.09004 * 109.46599 * 304.99741 * 13 12 2 15 15 O 1.42903 * 109.47020 * 64.99683 * 13 12 2 16 16 C 1.52990 * 109.47234 * 184.99859 * 13 12 2 17 17 N 1.46901 * 109.47292 * 179.97438 * 16 13 12 18 18 C 1.46906 * 111.00134 * 179.97438 * 17 16 13 19 19 H 1.08995 * 110.01620 * 326.39960 * 18 17 16 20 20 C 1.54266 * 110.02873 * 87.83698 * 18 17 16 21 21 C 1.55238 * 104.23333 * 142.89629 * 20 18 17 22 22 C 1.54894 * 102.58338 * 322.08174 * 21 20 18 23 23 C 1.53869 * 110.03081 * 204.99991 * 18 17 16 24 24 H 1.08995 * 110.03881 * 0.02562 * 23 18 17 25 25 O 1.42905 * 110.02835 * 121.43368 * 23 18 17 26 26 H 1.09003 * 109.46958 * 296.05089 * 1 2 3 27 27 H 1.08996 * 109.46684 * 56.04196 * 1 2 3 28 28 H 1.08997 * 109.47211 * 176.04483 * 1 2 3 29 29 H 1.08996 * 109.47487 * 53.95439 * 3 2 1 30 30 H 1.09002 * 109.46848 * 173.95559 * 3 2 1 31 31 H 0.96999 * 120.00213 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.47272 * 306.04182 * 12 2 1 33 33 H 1.09000 * 109.46472 * 186.04393 * 12 2 1 34 34 H 0.96701 * 114.00002 * 60.00426 * 15 13 12 35 35 H 1.08999 * 109.47311 * 59.99550 * 16 13 12 36 36 H 1.08999 * 109.47257 * 300.00239 * 16 13 12 37 37 H 1.00894 * 111.00280 * 303.95626 * 17 16 13 38 38 H 1.09005 * 110.48526 * 261.57501 * 20 18 17 39 39 H 1.09006 * 110.48581 * 24.21694 * 20 18 17 40 40 H 1.08996 * 110.89448 * 203.79739 * 21 20 18 41 41 H 1.08993 * 110.76342 * 80.31404 * 21 20 18 42 42 H 1.09002 * 110.48891 * 279.18596 * 22 21 20 43 43 H 1.08998 * 110.48494 * 156.67683 * 22 21 20 44 44 H 0.96698 * 113.99794 * 178.61694 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0485 6 6 2.0277 3.3492 -1.5289 7 7 2.7137 4.0013 -0.6158 8 14 1.5840 4.1865 -3.1386 9 1 0.2719 4.8674 -2.9972 10 1 2.6268 5.1872 -3.4800 11 1 1.5006 3.1705 -4.2185 12 6 1.9955 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9704 14 1 0.5531 -2.3388 0.8433 15 8 2.2956 -2.7696 -0.1800 16 6 2.0699 -3.0199 2.2131 17 7 1.7199 -4.4375 2.0528 18 6 2.1274 -5.2168 3.2296 19 1 3.0438 -4.8041 3.6512 20 6 1.0046 -5.2025 4.2874 21 6 1.0410 -6.6276 4.9019 22 6 1.3445 -7.5180 3.6713 23 6 2.3434 -6.6890 2.8378 24 1 2.1464 -6.8253 1.7745 25 8 3.6823 -7.0851 3.1424 26 1 -0.3633 0.4513 0.9233 27 1 -0.3632 0.5740 -0.8524 28 1 -0.3633 -1.0252 -0.0709 29 1 1.5612 1.9274 0.8309 30 1 3.0798 1.3444 0.1082 31 1 2.9889 4.9171 -0.7780 32 1 1.5612 -0.3872 2.0628 33 1 3.0797 -0.6611 1.1756 34 1 3.2601 -2.7168 -0.1359 35 1 1.5634 -2.6179 3.0905 36 1 3.1481 -2.9236 2.3402 37 1 0.7339 -4.5481 1.8692 38 1 1.2099 -4.4526 5.0514 39 1 0.0395 -5.0147 3.8168 40 1 0.0765 -6.8875 5.3382 41 1 1.8360 -6.7087 5.6430 42 1 0.4343 -7.7042 3.1013 43 1 1.7971 -8.4591 3.9838 44 1 3.8749 -8.0103 2.9378 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601970851.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:32 Heat of formation + Delta-G solvation = -102.649540 kcal Electronic energy + Delta-G solvation = -21354.543041 eV Core-core repulsion = 18113.339275 eV Total energy + Delta-G solvation = -3241.203766 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.48874 -37.99013 -35.93750 -35.24990 -33.72337 -32.49114 -29.89375 -28.04904 -27.50893 -26.84285 -25.22631 -23.28372 -21.41528 -21.28363 -20.36337 -20.00012 -17.36359 -16.65171 -16.40494 -15.97501 -15.72977 -15.41019 -14.85397 -14.59477 -14.25757 -14.07267 -13.56092 -13.41885 -13.22555 -12.81401 -12.73892 -12.38203 -12.19366 -11.90071 -11.65927 -11.45753 -11.30947 -11.07498 -11.04160 -10.87581 -10.84150 -10.71248 -10.67183 -10.24900 -10.11626 -9.95027 -9.52921 -9.07383 -8.48481 -8.41914 -7.17371 -6.00779 -4.01674 3.33690 3.39723 3.45155 3.64637 4.05377 4.27711 4.43289 4.54218 4.64670 4.84288 4.88041 5.01282 5.11116 5.21738 5.23918 5.25576 5.34340 5.39718 5.45609 5.49533 5.54994 5.63309 5.66766 5.70336 5.75169 5.82957 5.93065 6.07524 6.20717 6.31554 6.43597 6.77241 6.88381 7.23727 7.29427 7.34444 7.45244 7.82661 8.07589 8.17579 8.23861 8.57730 9.06399 9.62467 11.10266 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.046219 B = 0.002847 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.665419 B = 9833.531056 C = 9929.714258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.025 3.975 13 C 0.117 3.883 14 H 0.092 0.908 15 O -0.536 6.536 16 C 0.028 3.972 17 N -0.671 5.671 18 C 0.089 3.911 19 H 0.090 0.910 20 C -0.153 4.153 21 C -0.119 4.119 22 C -0.158 4.158 23 C 0.107 3.893 24 H 0.071 0.929 25 O -0.565 6.565 26 H 0.007 0.993 27 H 0.075 0.925 28 H 0.046 0.954 29 H -0.011 1.011 30 H 0.029 0.971 31 H 0.261 0.739 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.369 0.631 35 H 0.036 0.964 36 H 0.076 0.924 37 H 0.342 0.658 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.828 -21.913 10.906 24.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.105 4.105 13 C 0.056 3.944 14 H 0.110 0.890 15 O -0.340 6.340 16 C -0.102 4.102 17 N -0.301 5.301 18 C -0.022 4.022 19 H 0.109 0.891 20 C -0.193 4.193 21 C -0.157 4.157 22 C -0.196 4.196 23 C 0.048 3.952 24 H 0.089 0.911 25 O -0.371 6.371 26 H 0.026 0.974 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.006 0.994 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.215 0.785 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.161 0.839 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.577 -21.576 10.122 23.971 hybrid contribution -0.655 0.879 0.796 1.355 sum -3.233 -20.697 10.918 23.622 Atomic orbital electron populations 1.22256 0.89116 0.99489 1.00370 1.62024 1.06723 1.17415 1.39173 1.19745 0.95311 0.81611 0.96597 1.21176 1.34620 0.96844 1.01704 0.91782 1.24997 0.95322 0.97369 0.97035 1.69960 1.38478 1.11445 1.34184 0.86490 0.77928 0.79200 0.83769 1.20787 1.21267 1.19693 1.22728 1.00597 0.93902 0.93272 1.21874 0.97482 0.90664 0.84359 0.89050 1.86578 1.22978 1.83906 1.40541 1.22752 1.01590 0.87836 0.98028 1.60314 1.23532 1.08899 1.37405 1.22100 0.98250 0.92865 0.88965 0.89148 1.23186 0.99021 0.97830 0.99218 1.22447 1.01504 0.94419 0.97309 1.23118 1.00149 0.98797 0.97585 1.22428 0.81272 0.93399 0.98119 0.91082 1.86511 1.29702 1.32405 1.88443 0.97417 0.90664 0.93537 0.99356 0.95333 0.92967 0.95583 0.91099 0.78487 0.94573 0.90583 0.83947 0.91299 0.91227 0.91572 0.91188 0.90855 0.91156 0.77717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.14 60.07 0.55 1.28 16 2 N -0.53 -11.66 4.70 -244.37 -1.15 -12.81 16 3 C 0.19 5.11 4.72 -4.98 -0.02 5.09 16 4 C -0.50 -14.48 8.46 -34.44 -0.29 -14.77 16 5 H 0.06 1.83 7.12 -52.49 -0.37 1.46 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 8 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.02 0.44 4.60 -3.82 -0.02 0.42 16 13 C 0.12 1.70 3.13 -26.74 -0.08 1.62 16 14 H 0.09 1.36 6.34 -51.93 -0.33 1.03 16 15 O -0.54 -8.73 13.15 -35.23 -0.46 -9.20 16 16 C 0.03 0.33 5.18 -3.83 -0.02 0.31 16 17 N -0.67 -7.36 6.04 -105.55 -0.64 -8.00 16 18 C 0.09 0.88 3.05 -66.59 -0.20 0.68 16 19 H 0.09 1.05 7.62 -51.93 -0.40 0.65 16 20 C -0.15 -1.27 6.46 -24.88 -0.16 -1.43 16 21 C -0.12 -0.87 6.94 -24.55 -0.17 -1.04 16 22 C -0.16 -1.11 6.54 -25.07 -0.16 -1.27 16 23 C 0.11 0.97 4.06 -25.62 -0.10 0.87 16 24 H 0.07 0.69 7.92 -51.93 -0.41 0.28 16 25 O -0.57 -5.41 13.22 -35.23 -0.47 -5.87 16 26 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 28 H 0.05 0.80 6.37 -51.93 -0.33 0.47 16 29 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 30 H 0.03 0.81 7.93 -51.93 -0.41 0.39 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.07 1.25 7.93 -51.93 -0.41 0.83 16 34 H 0.37 5.13 9.05 45.56 0.41 5.54 16 35 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 37 H 0.34 3.51 8.10 -39.29 -0.32 3.19 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.55 7.56 -51.93 -0.39 0.16 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16 44 H 0.38 1.97 9.08 45.56 0.41 2.38 16 LS Contribution 350.28 15.07 5.28 5.28 Total: -1.00 -32.62 350.28 -8.76 -41.38 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.25 Total: 5.45 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -0.79 Total: -6.80 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -1.05 Total: -47.19 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.93 Total: -15.07 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.62 -8.76 -41.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601970851.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.271 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds