Wall clock time and date at job start Mon Mar 30 2020 01:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46898 * 110.99820 * 2 1 4 4 C 1.50700 * 109.47331 * 293.95242 * 3 2 1 5 5 H 1.08002 * 119.99711 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00067 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00117 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00020 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47447 * 89.99851 * 8 6 4 10 10 H 1.48502 * 109.47315 * 210.00268 * 8 6 4 11 11 H 1.48507 * 109.47165 * 329.99790 * 8 6 4 12 12 C 1.46900 * 110.99716 * 123.95395 * 2 1 3 13 13 C 1.53002 * 109.47287 * 66.04646 * 12 2 1 14 14 H 1.09004 * 109.46599 * 304.99741 * 13 12 2 15 15 O 1.42903 * 109.47020 * 64.99683 * 13 12 2 16 16 C 1.52990 * 109.47234 * 184.99859 * 13 12 2 17 17 N 1.46901 * 109.47292 * 179.97438 * 16 13 12 18 18 C 1.46906 * 111.00134 * 179.97438 * 17 16 13 19 19 H 1.08995 * 110.01620 * 326.39960 * 18 17 16 20 20 C 1.54266 * 110.02873 * 87.83698 * 18 17 16 21 21 C 1.55238 * 104.23333 * 142.89629 * 20 18 17 22 22 C 1.54894 * 102.58338 * 322.08174 * 21 20 18 23 23 C 1.53869 * 110.03081 * 204.99991 * 18 17 16 24 24 H 1.08995 * 110.03881 * 0.02562 * 23 18 17 25 25 O 1.42905 * 110.02835 * 121.43368 * 23 18 17 26 26 H 1.09003 * 109.46958 * 296.05089 * 1 2 3 27 27 H 1.08996 * 109.46684 * 56.04196 * 1 2 3 28 28 H 1.08997 * 109.47211 * 176.04483 * 1 2 3 29 29 H 1.08996 * 109.47487 * 53.95439 * 3 2 1 30 30 H 1.09002 * 109.46848 * 173.95559 * 3 2 1 31 31 H 0.96999 * 120.00213 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.47272 * 306.04182 * 12 2 1 33 33 H 1.09000 * 109.46472 * 186.04393 * 12 2 1 34 34 H 0.96701 * 114.00002 * 60.00426 * 15 13 12 35 35 H 1.08999 * 109.47311 * 59.99550 * 16 13 12 36 36 H 1.08999 * 109.47257 * 300.00239 * 16 13 12 37 37 H 1.00894 * 111.00280 * 303.95626 * 17 16 13 38 38 H 1.09005 * 110.48526 * 261.57501 * 20 18 17 39 39 H 1.09006 * 110.48581 * 24.21694 * 20 18 17 40 40 H 1.08996 * 110.89448 * 203.79739 * 21 20 18 41 41 H 1.08993 * 110.76342 * 80.31404 * 21 20 18 42 42 H 1.09002 * 110.48891 * 279.18596 * 22 21 20 43 43 H 1.08998 * 110.48494 * 156.67683 * 22 21 20 44 44 H 0.96698 * 113.99794 * 178.61694 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0485 6 6 2.0277 3.3492 -1.5289 7 7 2.7137 4.0013 -0.6158 8 14 1.5840 4.1865 -3.1386 9 1 0.2719 4.8674 -2.9972 10 1 2.6268 5.1872 -3.4800 11 1 1.5006 3.1705 -4.2185 12 6 1.9955 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9704 14 1 0.5531 -2.3388 0.8433 15 8 2.2956 -2.7696 -0.1800 16 6 2.0699 -3.0199 2.2131 17 7 1.7199 -4.4375 2.0528 18 6 2.1274 -5.2168 3.2296 19 1 3.0438 -4.8041 3.6512 20 6 1.0046 -5.2025 4.2874 21 6 1.0410 -6.6276 4.9019 22 6 1.3445 -7.5180 3.6713 23 6 2.3434 -6.6890 2.8378 24 1 2.1464 -6.8253 1.7745 25 8 3.6823 -7.0851 3.1424 26 1 -0.3633 0.4513 0.9233 27 1 -0.3632 0.5740 -0.8524 28 1 -0.3633 -1.0252 -0.0709 29 1 1.5612 1.9274 0.8309 30 1 3.0798 1.3444 0.1082 31 1 2.9889 4.9171 -0.7780 32 1 1.5612 -0.3872 2.0628 33 1 3.0797 -0.6611 1.1756 34 1 3.2601 -2.7168 -0.1359 35 1 1.5634 -2.6179 3.0905 36 1 3.1481 -2.9236 2.3402 37 1 0.7339 -4.5481 1.8692 38 1 1.2099 -4.4526 5.0514 39 1 0.0395 -5.0147 3.8168 40 1 0.0765 -6.8875 5.3382 41 1 1.8360 -6.7087 5.6430 42 1 0.4343 -7.7042 3.1013 43 1 1.7971 -8.4591 3.9838 44 1 3.8749 -8.0103 2.9378 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601970851.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:31 Heat of formation + Delta-G solvation = -131.308027 kcal Electronic energy + Delta-G solvation = -21355.785766 eV Core-core repulsion = 18113.339275 eV Total energy + Delta-G solvation = -3242.446491 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.26100 -39.28636 -37.27533 -36.29103 -34.62108 -34.55818 -31.18518 -29.21897 -28.66894 -28.19948 -26.68610 -24.78757 -22.75300 -21.95921 -21.83762 -20.92348 -18.58527 -18.07080 -17.60194 -17.03981 -16.81349 -16.55978 -16.39671 -15.94429 -15.64457 -15.37288 -14.89256 -14.58204 -14.19067 -14.12796 -13.83423 -13.48370 -13.33230 -13.19676 -12.94339 -12.83025 -12.60830 -12.53711 -12.45602 -12.39436 -12.02924 -11.99466 -11.71366 -11.61400 -11.50795 -11.37648 -10.79382 -10.62867 -10.62729 -9.33171 -8.96433 -8.21448 -6.31476 1.40543 1.42273 1.54319 2.39862 2.78727 3.10937 3.30622 3.43340 3.64944 3.72910 3.87825 3.97738 4.04734 4.15867 4.32716 4.36203 4.37563 4.48829 4.54414 4.59052 4.62714 4.70578 4.72596 4.76472 4.81340 4.91355 5.02307 5.05756 5.11450 5.14670 5.16699 5.17447 5.30620 5.35445 5.64112 6.01188 6.05792 6.31623 6.42655 6.62982 6.84699 6.95462 7.01818 7.38330 8.89695 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.046219 B = 0.002847 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.665419 B = 9833.531056 C = 9929.714258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.207 3.793 4 C -0.524 4.524 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.936 5.936 8 Si 0.970 3.030 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.024 3.976 13 C 0.130 3.870 14 H 0.094 0.906 15 O -0.554 6.554 16 C 0.040 3.960 17 N -0.676 5.676 18 C 0.087 3.913 19 H 0.071 0.929 20 C -0.150 4.150 21 C -0.117 4.117 22 C -0.151 4.151 23 C 0.107 3.893 24 H 0.063 0.937 25 O -0.585 6.585 26 H 0.011 0.989 27 H 0.055 0.945 28 H 0.078 0.922 29 H -0.039 1.039 30 H 0.003 0.997 31 H 0.265 0.735 32 H 0.032 0.968 33 H 0.065 0.935 34 H 0.378 0.622 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.347 0.653 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.909 -23.291 10.758 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.265 5.265 3 C 0.081 3.919 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.190 1.190 12 C -0.105 4.105 13 C 0.070 3.930 14 H 0.112 0.888 15 O -0.359 6.359 16 C -0.090 4.090 17 N -0.307 5.307 18 C -0.023 4.023 19 H 0.089 0.911 20 C -0.189 4.189 21 C -0.155 4.155 22 C -0.189 4.189 23 C 0.047 3.953 24 H 0.081 0.919 25 O -0.393 6.393 26 H 0.030 0.970 27 H 0.074 0.926 28 H 0.096 0.904 29 H -0.021 1.021 30 H 0.021 0.979 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.225 0.775 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.167 0.833 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.661 -22.995 9.984 25.335 hybrid contribution -0.279 1.251 0.885 1.558 sum -3.940 -21.743 10.869 24.626 Atomic orbital electron populations 1.22244 0.87765 1.01154 0.99699 1.61936 1.08055 1.14855 1.41631 1.19396 0.93605 0.83945 0.94958 1.21474 1.34814 0.97505 1.02400 0.92045 1.25927 0.94977 0.98043 1.00782 1.70082 1.39336 1.11922 1.36280 0.85370 0.78013 0.78063 0.79103 1.19677 1.20626 1.19019 1.22833 1.00229 0.95417 0.92004 1.21742 0.97445 0.88612 0.85189 0.88784 1.86541 1.23937 1.83880 1.41510 1.22521 1.01434 0.88279 0.96736 1.60276 1.24021 1.08177 1.38274 1.22116 0.98030 0.93215 0.88964 0.91101 1.23146 0.98554 0.98570 0.98661 1.22452 1.02074 0.93706 0.97299 1.23072 0.99902 0.98857 0.97069 1.22403 0.81681 0.93137 0.98032 0.91910 1.86468 1.30123 1.34158 1.88582 0.97000 0.92609 0.90391 1.02111 0.97921 0.92652 0.94941 0.91602 0.77490 0.93600 0.90910 0.83326 0.91564 0.90522 0.90242 0.91676 0.89969 0.89921 0.75729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 9.14 127.69 1.17 2.72 16 2 N -0.54 -23.94 4.70 -927.03 -4.36 -28.30 16 3 C 0.21 11.34 4.72 85.56 0.40 11.74 16 4 C -0.52 -30.49 8.46 25.60 0.22 -30.27 16 5 H 0.06 3.54 7.12 -2.91 -0.02 3.51 16 6 C 0.00 0.03 5.46 84.65 0.46 0.49 16 7 N -0.94 -57.16 13.29 21.45 0.28 -56.87 16 8 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 C 0.02 0.85 4.60 86.30 0.40 1.25 16 13 C 0.13 3.64 3.13 30.59 0.10 3.74 16 14 H 0.09 2.60 6.34 -2.39 -0.02 2.58 16 15 O -0.55 -17.46 13.15 -148.98 -1.96 -19.42 16 16 C 0.04 0.91 5.18 86.30 0.45 1.35 16 17 N -0.68 -13.90 6.04 -487.85 -2.95 -16.84 16 18 C 0.09 1.63 3.05 45.64 0.14 1.77 16 19 H 0.07 1.61 7.62 -2.39 -0.02 1.59 16 20 C -0.15 -2.22 6.46 31.79 0.21 -2.01 16 21 C -0.12 -1.46 6.94 32.01 0.22 -1.24 16 22 C -0.15 -1.77 6.54 31.67 0.21 -1.57 16 23 C 0.11 1.78 4.06 31.32 0.13 1.91 16 24 H 0.06 1.14 7.92 -2.39 -0.02 1.12 16 25 O -0.59 -10.55 13.22 -148.98 -1.97 -12.52 16 26 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.06 2.39 6.76 -2.39 -0.02 2.37 16 28 H 0.08 2.56 6.37 -2.39 -0.02 2.54 16 29 H -0.04 -2.28 8.12 -2.39 -0.02 -2.30 16 30 H 0.00 0.16 7.93 -2.39 -0.02 0.14 16 31 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.03 1.10 8.12 -2.39 -0.02 1.08 16 33 H 0.07 2.35 7.93 -2.39 -0.02 2.33 16 34 H 0.38 10.29 9.05 -74.06 -0.67 9.62 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 1.70 8.07 -2.39 -0.02 1.68 16 37 H 0.35 6.46 8.10 -89.70 -0.73 5.74 16 38 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.08 1.03 7.56 -2.38 -0.02 1.02 16 40 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 0.78 8.05 -2.39 -0.02 0.76 16 44 H 0.39 3.59 9.08 -74.06 -0.67 2.92 16 Total: -1.00 -69.82 350.28 -5.91 -75.73 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -1.07 Total: 21.23 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: 4.09 Total: -10.11 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -7.02 Total: -102.01 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -3.93 Total: -31.93 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -69.82 -5.91 -75.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601970851.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.579 kcal (2) G-P(sol) polarization free energy of solvation -69.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds