Wall clock time and date at job start Mon Mar 30 2020 01:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38194 * 119.98326 * 2 1 4 4 C 1.38467 * 119.97124 * 180.02562 * 3 2 1 5 5 F 1.35099 * 120.02097 * 179.97438 * 4 3 2 6 6 C 1.38456 * 119.94994 * 359.97438 * 4 3 2 7 7 C 1.38201 * 119.97138 * 0.02740 * 6 4 3 8 8 C 1.50704 * 119.98343 * 179.97438 * 7 6 4 9 9 C 1.38241 * 120.03013 * 359.97438 * 7 6 4 10 10 S 1.76200 * 119.97685 * 179.97438 * 9 7 6 11 11 O 1.42098 * 106.40230 * 199.00630 * 10 9 7 12 12 O 1.42097 * 106.39833 * 331.92558 * 10 9 7 13 13 N 1.65600 * 107.21795 * 85.46684 * 10 9 7 14 14 C 1.36928 * 120.00205 * 60.73598 * 13 10 9 15 15 H 1.08003 * 119.99908 * 353.87132 * 14 13 10 16 16 C 1.38808 * 120.00366 * 173.87169 * 14 13 10 17 17 N 1.31622 * 120.00607 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99772 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47162 * 90.00385 * 18 16 14 20 20 H 1.48504 * 109.47208 * 210.00379 * 18 16 14 21 21 H 1.48496 * 109.46973 * 329.99903 * 18 16 14 22 22 H 1.09002 * 109.47323 * 97.15788 * 1 2 3 23 23 H 1.09008 * 109.47003 * 217.15605 * 1 2 3 24 24 H 1.09001 * 109.47280 * 337.15443 * 1 2 3 25 25 H 1.08003 * 120.01755 * 359.72277 * 3 2 1 26 26 H 1.07998 * 120.01565 * 180.02562 * 6 4 3 27 27 H 1.09001 * 109.47182 * 263.78989 * 8 7 6 28 28 H 1.08997 * 109.47098 * 23.79048 * 8 7 6 29 29 H 1.08994 * 109.46914 * 143.79026 * 8 7 6 30 30 H 0.96995 * 119.99642 * 240.73630 * 13 10 9 31 31 H 0.96994 * 120.00437 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1970 0.0000 4 6 3.5823 1.1967 -0.0005 5 9 4.2585 2.3663 -0.0011 6 6 4.2733 -0.0031 -0.0005 7 6 3.5804 -1.1989 -0.0006 8 6 4.3322 -2.5050 -0.0012 9 6 2.1980 -1.1974 -0.0001 10 16 1.3160 -2.7228 -0.0008 11 8 -0.0008 -2.4247 -0.4441 12 8 2.1562 -3.6717 -0.6433 13 7 1.1794 -3.2108 1.5758 14 6 0.5192 -2.4240 2.4813 15 1 0.1740 -1.4420 2.1930 16 6 0.2935 -2.8883 3.7698 17 7 -0.3416 -2.1323 4.6401 18 14 0.8899 -4.5870 4.2682 19 1 2.2681 -4.4879 4.8120 20 1 -0.0134 -5.1436 5.3072 21 1 0.8888 -5.4798 3.0816 22 1 -0.3634 -0.1281 -1.0197 23 1 -0.3633 -0.8191 0.6207 24 1 -0.3634 0.9470 0.3990 25 1 1.6576 2.1323 -0.0045 26 1 5.3533 -0.0046 -0.0005 27 1 4.4168 -2.8751 -1.0229 28 1 5.3286 -2.3509 0.4131 29 1 3.7951 -3.2336 0.6059 30 1 1.5671 -4.0540 1.8577 31 1 -0.4996 -2.4569 5.5404 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229349188.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:41 Heat of formation + Delta-G solvation = -109.043241 kcal Electronic energy + Delta-G solvation = -19611.785351 eV Core-core repulsion = 16320.212048 eV Total energy + Delta-G solvation = -3291.573303 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 273.062 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.13075 -40.45491 -38.40054 -36.78497 -36.53551 -34.56886 -33.32828 -32.71800 -28.49668 -27.96417 -26.08281 -23.84733 -22.17665 -20.71558 -20.20481 -18.79286 -18.15552 -17.95781 -17.85031 -16.80923 -16.66445 -16.00248 -15.36354 -15.14023 -14.85454 -14.70581 -14.49633 -14.26747 -14.17686 -14.10608 -13.57362 -13.44047 -13.16228 -12.95192 -12.88043 -12.53955 -12.21189 -12.19730 -12.07684 -11.96062 -11.67544 -11.45299 -10.35436 -10.10136 -9.80368 -8.23997 -5.90494 -0.49122 -0.21983 0.11352 1.38688 1.40590 1.46924 2.11199 2.35203 2.45384 2.88545 2.97844 3.18867 3.40820 3.66511 3.70000 3.97433 4.24875 4.40921 4.47315 4.55180 4.62944 4.74953 4.80650 4.93021 5.01064 5.18171 5.20166 5.23730 5.43069 5.76405 5.81278 6.40963 7.06371 7.22141 8.90758 Molecular weight = 273.06amu Principal moments of inertia in cm(-1) A = 0.019662 B = 0.007806 C = 0.007370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.757242 B = 3586.214899 C = 3798.016932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 C -0.194 4.194 4 C 0.152 3.848 5 F -0.131 7.131 6 C -0.188 4.188 7 C 0.043 3.957 8 C -0.139 4.139 9 C -0.700 4.700 10 S 2.700 3.300 11 O -0.980 6.980 12 O -0.987 6.987 13 N -1.005 6.005 14 C -0.311 4.311 15 H 0.104 0.896 16 C -0.005 4.005 17 N -0.940 5.940 18 Si 0.929 3.071 19 H -0.261 1.261 20 H -0.283 1.283 21 H -0.246 1.246 22 H 0.097 0.903 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.162 0.838 26 H 0.171 0.829 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.396 0.604 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.142 2.820 -8.328 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.045 3.955 3 C -0.213 4.213 4 C 0.132 3.868 5 F -0.110 7.110 6 C -0.207 4.207 7 C 0.042 3.958 8 C -0.196 4.196 9 C -0.788 4.788 10 S 2.791 3.209 11 O -0.970 6.970 12 O -0.977 6.977 13 N -0.760 5.760 14 C -0.441 4.441 15 H 0.122 0.878 16 C -0.205 4.205 17 N -0.583 5.583 18 Si 0.752 3.248 19 H -0.186 1.186 20 H -0.208 1.208 21 H -0.170 1.170 22 H 0.116 0.884 23 H 0.102 0.898 24 H 0.107 0.893 25 H 0.179 0.821 26 H 0.189 0.811 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.087 0.913 30 H 0.232 0.768 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.706 2.605 -8.962 12.763 hybrid contribution 0.497 0.034 1.134 1.239 sum 9.203 2.640 -7.827 12.367 Atomic orbital electron populations 1.21539 0.89108 1.04877 1.05037 1.19614 0.96827 0.91122 0.87954 1.21297 0.92647 0.99756 1.07586 1.17942 0.90248 0.81489 0.97126 1.91516 1.80180 1.46038 1.93240 1.21311 1.02281 0.89845 1.07301 1.19670 0.90848 0.97049 0.88279 1.21353 1.01259 0.91702 1.05249 1.30767 1.06404 1.20306 1.21310 1.01380 0.73665 0.73573 0.72260 1.93536 1.37770 1.85228 1.80504 1.93506 1.68551 1.61204 1.74401 1.51542 1.67723 1.28950 1.27815 1.18857 1.32425 1.00056 0.92801 0.87822 1.25655 0.97527 1.01571 0.95698 1.69830 1.43861 1.38859 1.05769 0.85833 0.79154 0.80483 0.79311 1.18564 1.20835 1.16996 0.88424 0.89776 0.89341 0.82069 0.81129 0.87895 0.87687 0.91262 0.76841 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.20 8.18 71.24 0.58 -4.61 16 2 C 0.05 1.61 5.88 -19.87 -0.12 1.49 16 3 C -0.19 -5.76 9.65 22.31 0.22 -5.54 16 4 C 0.15 4.28 7.30 22.38 0.16 4.44 16 5 F -0.13 -3.45 17.27 44.97 0.78 -2.67 16 6 C -0.19 -5.05 9.66 22.31 0.22 -4.83 16 7 C 0.04 1.33 5.87 -19.87 -0.12 1.22 16 8 C -0.14 -3.70 8.34 71.24 0.59 -3.10 16 9 C -0.70 -25.19 5.79 22.27 0.13 -25.06 16 10 S 2.70 107.17 4.84 -56.49 -0.27 106.90 16 11 O -0.98 -42.92 13.77 -128.00 -1.76 -44.68 16 12 O -0.99 -38.14 14.61 -128.00 -1.87 -40.01 16 13 N -1.00 -43.73 5.53 -54.27 -0.30 -44.03 16 14 C -0.31 -15.83 9.97 84.03 0.84 -14.99 16 15 H 0.10 5.55 5.74 -2.91 -0.02 5.53 16 16 C 0.00 -0.25 5.50 84.86 0.47 0.22 16 17 N -0.94 -53.79 13.97 21.65 0.30 -53.49 16 18 Si 0.93 39.69 27.68 68.60 1.90 41.59 16 19 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.25 -9.56 6.61 99.48 0.66 -8.90 16 22 H 0.10 3.15 7.85 -2.39 -0.02 3.13 16 23 H 0.08 3.51 3.64 -2.38 -0.01 3.50 16 24 H 0.09 2.60 8.03 -2.39 -0.02 2.58 16 25 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 26 H 0.17 3.35 8.06 -2.91 -0.02 3.32 16 27 H 0.10 2.58 7.82 -2.39 -0.02 2.56 16 28 H 0.10 2.04 8.04 -2.39 -0.02 2.02 16 29 H 0.07 2.04 6.25 -2.39 -0.01 2.02 16 30 H 0.40 15.89 5.97 -96.75 -0.58 15.32 16 31 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -62.03 272.41 2.30 -59.73 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.56 Total: 27.44 kcal Atomic # 6 Polarization: -53.75 SS G_CDS: 2.97 Total: -50.78 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: 0.00 Total: -97.52 kcal Atomic # 8 Polarization: -81.06 SS G_CDS: -3.63 Total: -84.69 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 1.90 Total: 41.59 kcal Atomic # 16 Polarization: 107.17 SS G_CDS: -0.27 Total: 106.90 kcal Total: -62.03 2.30 -59.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229349188.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.315 kcal (2) G-P(sol) polarization free energy of solvation -62.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds