Wall clock time and date at job start Mon Mar 30 2020 01:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47249 * 2 1 4 4 C 1.50703 * 109.47172 * 119.99817 * 2 1 3 5 5 O 1.21294 * 120.00084 * 119.99908 * 4 2 1 6 6 N 1.34779 * 119.99860 * 300.00152 * 4 2 1 7 7 C 1.46502 * 120.00148 * 0.02562 * 6 4 2 8 8 C 1.37101 * 120.00082 * 179.97438 * 6 4 2 9 9 H 1.07998 * 119.99833 * 321.53142 * 8 6 4 10 10 C 1.38951 * 119.99871 * 141.52719 * 8 6 4 11 11 N 1.31410 * 119.99484 * 157.48269 * 10 8 6 12 12 Si 1.86800 * 119.99871 * 337.47792 * 10 8 6 13 13 H 1.48498 * 109.47005 * 95.64262 * 12 10 8 14 14 H 1.48503 * 109.47139 * 215.63582 * 12 10 8 15 15 H 1.48496 * 109.47333 * 335.63629 * 12 10 8 16 16 C 1.50698 * 109.47399 * 240.00003 * 2 1 3 17 17 C 1.33348 * 125.19051 * 119.98632 * 16 2 1 18 18 C 1.38470 * 114.92776 * 179.77120 * 17 16 2 19 19 C 1.33503 * 114.88658 * 0.49556 * 18 17 16 20 20 Cl 1.73597 * 125.20983 * 179.79444 * 19 18 17 21 21 S 1.75882 * 125.18738 * 300.02396 * 16 2 1 22 22 H 1.09002 * 109.46854 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47249 * 300.00078 * 1 2 3 24 24 H 1.09004 * 109.46773 * 59.99728 * 1 2 3 25 25 H 1.08991 * 109.47422 * 88.83352 * 7 6 4 26 26 H 1.09007 * 109.46731 * 208.83981 * 7 6 4 27 27 H 1.09003 * 109.46700 * 328.82738 * 7 6 4 28 28 H 0.97007 * 119.99299 * 179.97438 * 11 10 8 29 29 H 1.08001 * 122.53474 * 0.05396 * 17 16 2 30 30 H 1.07995 * 122.55629 * 180.30790 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7297 -1.6966 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 0.8640 0.9409 2.5890 8 6 2.1633 -0.8964 3.5741 9 1 2.2130 -1.9751 3.5921 10 6 2.5621 -0.1638 4.6854 11 7 2.5742 -0.7260 5.8731 12 14 3.0811 1.6201 4.4909 13 1 1.9251 2.5062 4.7801 14 1 4.1843 1.9208 5.4384 15 1 3.5464 1.8514 3.0998 16 6 2.0324 -0.7104 -1.2304 17 6 2.8021 -0.1644 -2.1726 18 6 3.1442 -1.0138 -3.2113 19 6 2.6427 -2.2474 -3.1167 20 17 2.8960 -3.5218 -4.2679 21 16 1.6922 -2.3859 -1.6433 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.1847 0.6443 2.6017 26 1 1.1075 1.4553 3.5187 27 1 1.0425 1.6093 1.7466 28 1 2.8530 -0.2146 6.6488 29 1 3.1373 0.8612 -2.1265 30 1 3.7666 -0.7012 -4.0366 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335333643.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:02 Heat of formation + Delta-G solvation = 10.700172 kcal Electronic energy + Delta-G solvation = -16680.948137 eV Core-core repulsion = 13822.903674 eV Total energy + Delta-G solvation = -2858.044463 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 273.033 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.29117 -37.69672 -36.49446 -34.88570 -33.54283 -31.89911 -28.34723 -26.50153 -25.41537 -24.19572 -22.50915 -19.47120 -19.15635 -17.15667 -16.93780 -16.21718 -15.71387 -15.38119 -14.38856 -14.11178 -13.70594 -13.40458 -13.23050 -12.80327 -12.65785 -12.50222 -12.35500 -12.02383 -11.81252 -11.47149 -11.28570 -11.13360 -10.86657 -10.80114 -10.41128 -10.33043 -9.97935 -9.11134 -8.65838 -8.32137 -8.15634 -7.77469 -6.44483 -4.02046 1.01000 1.32976 2.11325 2.39029 2.77121 2.98786 3.18468 3.22677 3.64132 4.10259 4.34807 4.79668 4.92619 5.20935 5.32832 5.42474 5.52248 5.57692 5.74008 5.86920 5.92313 6.03600 6.06702 6.18263 6.25165 6.38545 6.50392 7.49088 8.23439 8.44594 8.90598 9.25759 9.69283 10.67469 Molecular weight = 273.03amu Principal moments of inertia in cm(-1) A = 0.036225 B = 0.004965 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.757220 B = 5638.331047 C = 5806.663884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.047 4.047 3 H 0.105 0.895 4 C 0.464 3.536 5 O -0.551 6.551 6 N -0.466 5.466 7 C 0.061 3.939 8 C -0.317 4.317 9 H 0.105 0.895 10 C 0.061 3.939 11 N -0.861 5.861 12 Si 0.877 3.123 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.265 1.265 16 C -0.127 4.127 17 C -0.149 4.149 18 C -0.116 4.116 19 C -0.172 4.172 20 Cl -0.030 7.030 21 S 0.201 5.799 22 H 0.060 0.940 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.274 0.726 29 H 0.143 0.857 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.118 3.895 -15.772 16.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.070 4.070 3 H 0.123 0.877 4 C 0.251 3.749 5 O -0.432 6.432 6 N -0.187 5.187 7 C -0.083 4.083 8 C -0.444 4.444 9 H 0.123 0.877 10 C -0.145 4.145 11 N -0.497 5.497 12 Si 0.705 3.295 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.189 1.189 16 C -0.246 4.246 17 C -0.178 4.178 18 C -0.149 4.149 19 C -0.316 4.316 20 Cl -0.001 7.001 21 S 0.466 5.534 22 H 0.079 0.921 23 H 0.100 0.900 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.161 0.839 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.531 2.081 -15.026 15.831 hybrid contribution 1.298 2.106 -0.645 2.557 sum -3.233 4.187 -15.671 16.539 Atomic orbital electron populations 1.22112 0.92545 1.03202 1.03414 1.19945 0.97207 0.99676 0.90199 0.87724 1.20061 0.83382 0.87662 0.83842 1.90605 1.39626 1.27301 1.85640 1.43590 1.43940 1.26075 1.05137 1.22186 0.95448 0.89236 1.01412 1.19030 1.43109 0.93676 0.88624 0.87709 1.25373 0.95668 0.98661 0.94771 1.69767 1.43382 1.38308 0.98234 0.86952 0.78610 0.84950 0.79020 1.20187 1.21336 1.18916 1.24159 1.03793 0.96984 0.99641 1.19826 1.01725 1.01578 0.94700 1.20005 1.02441 0.91579 1.00915 1.25338 1.12080 0.94497 0.99645 1.98330 1.95719 1.49033 1.57047 1.84489 1.47831 1.09808 1.11270 0.92099 0.90013 0.91772 0.92468 0.91805 0.92455 0.91537 0.83946 0.84024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 8.76 37.16 0.33 -1.78 16 2 C -0.05 -0.77 2.30 -92.92 -0.21 -0.99 16 3 H 0.10 1.52 7.34 -51.93 -0.38 1.14 16 4 C 0.46 10.42 7.00 -10.98 -0.08 10.34 16 5 O -0.55 -14.48 15.13 5.55 0.08 -14.40 16 6 N -0.47 -10.91 2.55 -122.19 -0.31 -11.22 16 7 C 0.06 1.12 7.58 59.85 0.45 1.57 16 8 C -0.32 -8.85 9.33 -14.93 -0.14 -8.99 16 9 H 0.11 3.30 7.93 -52.49 -0.42 2.89 16 10 C 0.06 1.67 5.29 -17.47 -0.09 1.58 16 11 N -0.86 -24.60 13.96 55.50 0.77 -23.83 16 12 Si 0.88 20.12 25.10 -169.99 -4.27 15.85 16 13 H -0.27 -5.79 6.69 56.52 0.38 -5.42 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 16 C -0.13 -2.06 4.60 -36.02 -0.17 -2.23 16 17 C -0.15 -2.12 10.01 -41.20 -0.41 -2.53 16 18 C -0.12 -1.58 10.13 -41.15 -0.42 -1.99 16 19 C -0.17 -2.50 7.10 29.08 0.21 -2.30 16 20 Cl -0.03 -0.38 29.29 -51.86 -1.52 -1.90 16 21 S 0.20 3.27 22.17 -107.50 -2.38 0.89 16 22 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 23 H 0.08 1.05 4.51 -51.93 -0.23 0.81 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.92 6.88 -51.93 -0.36 0.57 16 26 H 0.06 1.27 3.48 -51.92 -0.18 1.09 16 27 H 0.06 0.86 6.09 -51.93 -0.32 0.54 16 28 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 278.00 15.07 4.19 4.19 Total: -1.00 -31.25 278.00 -6.69 -37.94 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -2.73 Total: -0.22 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -0.53 Total: -7.30 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.46 Total: -35.05 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.08 Total: -14.40 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.27 Total: 15.85 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -2.38 Total: 0.89 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.52 Total: -1.90 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.25 -6.69 -37.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335333643.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.639 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds