Wall clock time and date at job start Mon Mar 30 2020 01:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47249 * 2 1 4 4 C 1.50703 * 109.47172 * 119.99817 * 2 1 3 5 5 O 1.21294 * 120.00084 * 119.99908 * 4 2 1 6 6 N 1.34779 * 119.99860 * 300.00152 * 4 2 1 7 7 C 1.46502 * 120.00148 * 0.02562 * 6 4 2 8 8 C 1.37101 * 120.00082 * 179.97438 * 6 4 2 9 9 H 1.07998 * 119.99833 * 321.53142 * 8 6 4 10 10 C 1.38951 * 119.99871 * 141.52719 * 8 6 4 11 11 N 1.31410 * 119.99484 * 157.48269 * 10 8 6 12 12 Si 1.86800 * 119.99871 * 337.47792 * 10 8 6 13 13 H 1.48498 * 109.47005 * 95.64262 * 12 10 8 14 14 H 1.48503 * 109.47139 * 215.63582 * 12 10 8 15 15 H 1.48496 * 109.47333 * 335.63629 * 12 10 8 16 16 C 1.50698 * 109.47399 * 240.00003 * 2 1 3 17 17 C 1.33348 * 125.19051 * 119.98632 * 16 2 1 18 18 C 1.38470 * 114.92776 * 179.77120 * 17 16 2 19 19 C 1.33503 * 114.88658 * 0.49556 * 18 17 16 20 20 Cl 1.73597 * 125.20983 * 179.79444 * 19 18 17 21 21 S 1.75882 * 125.18738 * 300.02396 * 16 2 1 22 22 H 1.09002 * 109.46854 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47249 * 300.00078 * 1 2 3 24 24 H 1.09004 * 109.46773 * 59.99728 * 1 2 3 25 25 H 1.08991 * 109.47422 * 88.83352 * 7 6 4 26 26 H 1.09007 * 109.46731 * 208.83981 * 7 6 4 27 27 H 1.09003 * 109.46700 * 328.82738 * 7 6 4 28 28 H 0.97007 * 119.99299 * 179.97438 * 11 10 8 29 29 H 1.08001 * 122.53474 * 0.05396 * 17 16 2 30 30 H 1.07995 * 122.55629 * 180.30790 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7297 -1.6966 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 0.8640 0.9409 2.5890 8 6 2.1633 -0.8964 3.5741 9 1 2.2130 -1.9751 3.5921 10 6 2.5621 -0.1638 4.6854 11 7 2.5742 -0.7260 5.8731 12 14 3.0811 1.6201 4.4909 13 1 1.9251 2.5062 4.7801 14 1 4.1843 1.9208 5.4384 15 1 3.5464 1.8514 3.0998 16 6 2.0324 -0.7104 -1.2304 17 6 2.8021 -0.1644 -2.1726 18 6 3.1442 -1.0138 -3.2113 19 6 2.6427 -2.2474 -3.1167 20 17 2.8960 -3.5218 -4.2679 21 16 1.6922 -2.3859 -1.6433 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.1847 0.6443 2.6017 26 1 1.1075 1.4553 3.5187 27 1 1.0425 1.6093 1.7466 28 1 2.8530 -0.2146 6.6488 29 1 3.1373 0.8612 -2.1265 30 1 3.7666 -0.7012 -4.0366 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335333643.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:02 Heat of formation + Delta-G solvation = -9.567439 kcal Electronic energy + Delta-G solvation = -16681.827007 eV Core-core repulsion = 13822.903674 eV Total energy + Delta-G solvation = -2858.923333 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 273.033 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.90671 -38.87843 -37.60079 -36.71488 -34.96829 -33.79366 -29.53145 -28.06236 -27.18493 -25.41927 -23.86592 -20.90877 -20.45397 -19.09865 -18.24113 -17.78891 -17.37643 -16.64060 -15.96971 -15.72372 -15.03222 -14.71829 -14.51086 -14.37082 -14.13309 -13.99488 -13.68049 -13.39000 -13.17552 -12.78330 -12.60760 -12.55079 -12.32119 -12.08900 -11.93891 -11.76051 -11.54717 -11.01318 -10.34966 -9.68360 -9.48844 -9.39132 -8.51555 -6.14626 -0.13521 0.19784 0.98304 1.21009 1.27519 1.34462 1.46790 1.68191 1.94422 2.18834 2.73987 2.96949 3.56633 3.87184 4.14895 4.22880 4.36550 4.42225 4.55821 4.63829 4.71820 4.86129 4.94764 5.00024 5.15153 5.28836 5.42645 5.53915 6.04588 6.56056 6.94528 7.29504 7.86342 8.65931 Molecular weight = 273.03amu Principal moments of inertia in cm(-1) A = 0.036225 B = 0.004965 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.757220 B = 5638.331047 C = 5806.663884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.035 4.035 3 H 0.138 0.862 4 C 0.456 3.544 5 O -0.603 6.603 6 N -0.479 5.479 7 C 0.052 3.948 8 C -0.336 4.336 9 H 0.040 0.960 10 C 0.012 3.988 11 N -0.911 5.911 12 Si 0.953 3.047 13 H -0.236 1.236 14 H -0.293 1.293 15 H -0.256 1.256 16 C -0.149 4.149 17 C -0.135 4.135 18 C -0.112 4.112 19 C -0.173 4.173 20 Cl -0.017 7.017 21 S 0.138 5.862 22 H 0.042 0.958 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.103 0.897 28 H 0.280 0.720 29 H 0.175 0.825 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.339 7.640 -18.035 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.058 4.058 3 H 0.156 0.844 4 C 0.246 3.754 5 O -0.486 6.486 6 N -0.201 5.201 7 C -0.089 4.089 8 C -0.464 4.464 9 H 0.058 0.942 10 C -0.191 4.191 11 N -0.549 5.549 12 Si 0.776 3.224 13 H -0.160 1.160 14 H -0.220 1.220 15 H -0.180 1.180 16 C -0.267 4.267 17 C -0.164 4.164 18 C -0.145 4.145 19 C -0.316 4.316 20 Cl 0.011 6.989 21 S 0.402 5.598 22 H 0.061 0.939 23 H 0.110 0.890 24 H 0.118 0.882 25 H 0.098 0.902 26 H 0.072 0.928 27 H 0.122 0.878 28 H 0.089 0.911 29 H 0.193 0.807 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.796 5.842 -17.301 18.880 hybrid contribution 1.387 0.784 -0.028 1.594 sum -3.408 6.626 -17.329 18.864 Atomic orbital electron populations 1.22136 0.90254 1.02853 1.05612 1.19918 0.99030 1.00080 0.86743 0.84421 1.21175 0.82153 0.86840 0.85278 1.90573 1.41742 1.29596 1.86719 1.43713 1.44863 1.27362 1.04191 1.22477 0.95814 0.87810 1.02819 1.18603 1.45127 0.91509 0.91175 0.94247 1.26207 0.94854 1.04325 0.93673 1.69892 1.44683 1.40964 0.99347 0.85773 0.78994 0.78612 0.79047 1.16012 1.21999 1.17979 1.24223 1.05704 0.96300 1.00519 1.20244 0.99599 1.02947 0.93656 1.20391 1.01855 0.90816 1.01444 1.25413 1.11819 0.95385 0.99025 1.98334 1.95579 1.48718 1.56237 1.84704 1.49623 1.11945 1.13504 0.93882 0.88993 0.88220 0.90250 0.92830 0.87849 0.91054 0.80746 0.80999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 8.76 71.98 0.63 -2.98 16 2 C -0.03 -1.05 2.30 -12.28 -0.03 -1.08 16 3 H 0.14 3.25 7.34 -2.39 -0.02 3.23 16 4 C 0.46 20.40 7.00 87.66 0.61 21.02 16 5 O -0.60 -32.92 15.13 -3.07 -0.05 -32.97 16 6 N -0.48 -22.31 2.55 -658.87 -1.68 -23.99 16 7 C 0.05 1.76 7.58 127.77 0.97 2.73 16 8 C -0.34 -19.59 9.33 84.04 0.78 -18.80 16 9 H 0.04 2.73 7.93 -2.91 -0.02 2.71 16 10 C 0.01 0.64 5.29 84.93 0.45 1.09 16 11 N -0.91 -54.04 13.96 21.66 0.30 -53.74 16 12 Si 0.95 40.64 25.10 68.60 1.72 42.36 16 13 H -0.24 -8.56 6.69 99.48 0.67 -7.90 16 14 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 15 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 16 C -0.15 -4.52 4.60 24.58 0.11 -4.40 16 17 C -0.13 -3.33 10.01 21.22 0.21 -3.12 16 18 C -0.11 -2.69 10.13 21.25 0.22 -2.47 16 19 C -0.17 -4.77 7.10 66.75 0.47 -4.30 16 20 Cl -0.02 -0.42 29.29 -2.72 -0.08 -0.50 16 21 S 0.14 4.50 22.17 -56.49 -1.25 3.25 16 22 H 0.04 1.18 8.00 -2.39 -0.02 1.16 16 23 H 0.09 1.98 4.51 -2.39 -0.01 1.97 16 24 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.08 2.31 6.88 -2.39 -0.02 2.29 16 26 H 0.05 1.92 3.48 -2.38 -0.01 1.91 16 27 H 0.10 2.51 6.09 -2.39 -0.01 2.49 16 28 H 0.28 15.16 8.31 -92.70 -0.77 14.39 16 29 H 0.18 3.15 8.06 -2.91 -0.02 3.13 16 30 H 0.17 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -74.07 278.00 4.53 -69.54 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.13 Total: 8.35 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 4.43 Total: -12.31 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -1.38 Total: -77.73 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -0.05 Total: -32.97 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 1.72 Total: 42.36 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -1.25 Total: 3.25 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.50 kcal Total: -74.07 4.53 -69.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335333643.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.976 kcal (2) G-P(sol) polarization free energy of solvation -74.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds