Wall clock time and date at job start Mon Mar 30 2020 01:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31386 * 1 3 3 Si 1.86809 * 119.99872 * 2 1 4 4 H 1.48502 * 109.47031 * 270.00190 * 3 2 1 5 5 H 1.48506 * 109.46854 * 30.00108 * 3 2 1 6 6 H 1.48492 * 109.47021 * 150.00050 * 3 2 1 7 7 C 1.39014 * 120.00661 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99614 * 0.02562 * 7 2 1 9 9 N 1.36906 * 120.00433 * 179.97438 * 7 2 1 10 10 C 1.34778 * 119.99911 * 180.02562 * 9 7 2 11 11 O 1.21643 * 120.00189 * 359.97438 * 10 9 7 12 12 C 1.47367 * 119.99980 * 180.02562 * 10 9 7 13 13 C 1.39902 * 120.07070 * 180.02562 * 12 10 9 14 14 C 1.36599 * 119.92598 * 180.02562 * 13 12 10 15 15 C 1.39308 * 120.07203 * 0.02562 * 14 13 12 16 16 S 1.76207 * 119.92791 * 179.97438 * 15 14 13 17 17 C 1.81399 * 102.99967 * 179.97438 * 16 15 14 18 18 F 1.39905 * 109.47243 * 300.00158 * 17 16 15 19 19 F 1.39898 * 109.47339 * 59.99959 * 17 16 15 20 20 C 1.39315 * 120.14265 * 0.23133 * 15 14 13 21 21 C 1.36601 * 120.07162 * 359.48424 * 20 15 14 22 22 H 0.96993 * 120.00097 * 359.97438 * 1 2 3 23 23 H 0.97003 * 120.00089 * 359.97438 * 9 7 2 24 24 H 1.07998 * 120.02955 * 359.97438 * 13 12 10 25 25 H 1.08002 * 119.96067 * 179.97438 * 14 13 12 26 26 H 1.09001 * 109.47190 * 179.97438 * 17 16 15 27 27 H 1.08001 * 119.96418 * 179.72204 * 20 15 14 28 28 H 1.07997 * 120.03824 * 180.22776 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.4953 2.0465 -1.4001 5 1 1.4452 2.6527 0.7001 6 1 3.5454 1.4403 0.7000 7 6 2.0091 -1.2038 0.0005 8 1 1.4691 -2.1392 0.0005 9 7 3.3781 -1.2038 0.0000 10 6 4.0520 -2.3710 0.0000 11 8 3.4439 -3.4244 0.0010 12 6 5.5257 -2.3709 0.0000 13 6 6.2268 -3.5816 -0.0005 14 6 7.5927 -3.5781 0.0000 15 6 8.2877 -2.3708 0.0016 16 16 10.0498 -2.3707 0.0030 17 6 10.4578 -0.6032 0.0041 18 9 9.9209 0.0001 -1.1384 19 9 9.9192 -0.0010 1.1462 20 6 7.5926 -1.1635 0.0076 21 6 6.2266 -1.1601 0.0012 22 1 -0.4850 0.8400 0.0004 23 1 3.8631 -0.3637 -0.0011 24 1 5.6884 -4.5179 -0.0005 25 1 8.1345 -4.5125 0.0000 26 1 11.5408 -0.4803 0.0054 27 1 8.1343 -0.2292 0.0133 28 1 5.6883 -0.2238 0.0021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749608374.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:28 Heat of formation + Delta-G solvation = -94.740098 kcal Electronic energy + Delta-G solvation = -17958.081766 eV Core-core repulsion = 14543.668390 eV Total energy + Delta-G solvation = -3414.413377 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 273.038 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.62152 -47.61315 -39.52718 -37.58902 -34.22105 -32.09323 -31.04508 -30.85400 -27.34275 -25.56931 -23.26617 -22.42569 -19.71788 -19.15121 -18.67992 -18.17392 -17.80752 -17.01488 -16.23953 -15.37447 -14.73827 -14.54534 -14.51390 -14.07687 -13.93734 -13.91017 -13.72945 -13.31802 -13.04473 -12.74302 -12.69804 -12.25463 -11.48702 -11.34587 -11.05096 -10.72165 -10.66645 -10.12750 -9.97793 -9.67757 -9.03328 -8.71474 -8.36640 -7.82624 -6.53173 -3.95249 0.46583 0.88101 1.49202 1.61802 2.92416 2.96839 3.05065 3.34444 3.35540 3.93730 3.94619 4.02580 4.28402 4.46198 4.80621 4.87528 5.15548 5.39794 5.47632 5.61522 5.71925 6.02852 6.23448 6.39298 6.61434 6.89566 7.37427 7.97420 8.40370 8.75465 9.21725 9.67913 10.58149 Molecular weight = 273.04amu Principal moments of inertia in cm(-1) A = 0.024878 B = 0.005051 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.221997 B = 5541.949255 C = 6492.678048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.044 3.956 3 Si 0.877 3.123 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.297 4.297 8 H 0.126 0.874 9 N -0.565 5.565 10 C 0.470 3.530 11 O -0.579 6.579 12 C -0.084 4.084 13 C -0.062 4.062 14 C -0.090 4.090 15 C -0.102 4.102 16 S -0.104 6.104 17 C 0.272 3.728 18 F -0.180 7.180 19 F -0.180 7.180 20 C -0.119 4.119 21 C -0.093 4.093 22 H 0.279 0.721 23 H 0.372 0.628 24 H 0.143 0.857 25 H 0.131 0.869 26 H 0.155 0.845 27 H 0.126 0.874 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.339 1.201 -0.016 22.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.162 4.162 3 Si 0.703 3.297 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.192 1.192 7 C -0.426 4.426 8 H 0.143 0.857 9 N -0.202 5.202 10 C 0.259 3.741 11 O -0.464 6.464 12 C -0.089 4.089 13 C -0.083 4.083 14 C -0.113 4.113 15 C -0.215 4.215 16 S 0.133 5.867 17 C 0.109 3.891 18 F -0.162 7.162 19 F -0.162 7.162 20 C -0.142 4.142 21 C -0.114 4.114 22 H 0.089 0.911 23 H 0.206 0.794 24 H 0.161 0.839 25 H 0.149 0.851 26 H 0.172 0.828 27 H 0.144 0.856 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 22.502 -0.159 -0.014 22.503 hybrid contribution -0.389 2.599 0.020 2.628 sum 22.113 2.440 0.006 22.247 Atomic orbital electron populations 1.69602 1.05780 1.28182 1.46374 1.25137 0.95603 0.98324 0.97102 0.86692 0.80020 0.83639 0.79395 1.19050 1.19576 1.19228 1.19590 0.79203 0.97023 1.46777 0.85660 1.42263 1.07703 1.06505 1.63707 1.17456 0.85692 0.84620 0.86323 1.90656 1.69006 1.30565 1.56189 1.20501 0.94967 0.93485 0.99982 1.20926 0.92650 0.98501 0.96218 1.20392 0.94018 0.95787 1.01136 1.21499 0.94028 0.97190 1.08767 1.86103 1.03090 1.04313 1.93201 1.24287 0.99744 0.91504 0.73552 1.93128 1.88165 1.84856 1.50024 1.93125 1.88096 1.84900 1.50057 1.20943 0.95158 0.96194 1.01934 1.20985 0.93585 0.97861 0.98984 0.91074 0.79355 0.83915 0.85135 0.82814 0.85645 0.85583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.32 13.96 55.50 0.77 -23.55 15 2 C 0.04 1.18 5.50 -17.45 -0.10 1.08 15 3 Si 0.88 18.88 27.74 -169.99 -4.71 14.16 15 4 H -0.27 -5.58 7.11 56.52 0.40 -5.17 15 5 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 6 H -0.27 -5.28 6.52 56.52 0.37 -4.91 15 7 C -0.30 -8.30 10.16 -15.00 -0.15 -8.46 15 8 H 0.13 3.96 7.38 -52.49 -0.39 3.57 15 9 N -0.57 -13.75 5.03 -11.97 -0.06 -13.81 15 10 C 0.47 11.25 7.71 -12.55 -0.10 11.15 15 11 O -0.58 -15.92 15.91 5.24 0.08 -15.84 15 12 C -0.08 -1.60 5.88 -104.94 -0.62 -2.22 15 13 C -0.06 -1.03 9.54 -39.55 -0.38 -1.41 15 14 C -0.09 -1.27 9.73 -39.78 -0.39 -1.65 15 15 C -0.10 -1.41 6.13 -38.78 -0.24 -1.65 15 16 S -0.10 -1.08 22.16 -107.50 -2.38 -3.46 15 17 C 0.27 2.33 5.37 101.05 0.54 2.88 15 18 F -0.18 -1.90 15.65 2.25 0.04 -1.87 15 19 F -0.18 -1.91 15.62 2.25 0.04 -1.87 15 20 C -0.12 -1.77 8.62 -39.77 -0.34 -2.12 15 21 C -0.09 -1.56 9.49 -39.55 -0.38 -1.94 15 22 H 0.28 7.20 8.31 -40.82 -0.34 6.86 15 23 H 0.37 7.98 3.77 -40.82 -0.15 7.83 15 24 H 0.14 2.37 7.64 -52.49 -0.40 1.97 15 25 H 0.13 1.47 8.06 -52.49 -0.42 1.05 15 26 H 0.15 0.62 8.14 -51.92 -0.42 0.20 15 27 H 0.13 1.70 4.53 -52.49 -0.24 1.46 15 28 H 0.13 1.99 6.39 -52.49 -0.34 1.66 15 LS Contribution 269.15 15.07 4.06 4.06 Total: -1.00 -31.53 269.15 -5.84 -37.37 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -1.53 Total: 9.15 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -2.14 Total: -4.34 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.71 Total: -37.36 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.08 Total: -15.84 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.07 Total: -3.74 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.71 Total: 14.16 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -2.38 Total: -3.46 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.53 -5.84 -37.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749608374.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.370 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds