Wall clock time and date at job start Mon Mar 30 2020 01:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31386 * 1 3 3 Si 1.86809 * 119.99872 * 2 1 4 4 H 1.48502 * 109.47031 * 270.00190 * 3 2 1 5 5 H 1.48506 * 109.46854 * 30.00108 * 3 2 1 6 6 H 1.48492 * 109.47021 * 150.00050 * 3 2 1 7 7 C 1.39014 * 120.00661 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99614 * 0.02562 * 7 2 1 9 9 N 1.36906 * 120.00433 * 179.97438 * 7 2 1 10 10 C 1.34778 * 119.99911 * 180.02562 * 9 7 2 11 11 O 1.21643 * 120.00189 * 359.97438 * 10 9 7 12 12 C 1.47367 * 119.99980 * 180.02562 * 10 9 7 13 13 C 1.39902 * 120.07070 * 180.02562 * 12 10 9 14 14 C 1.36599 * 119.92598 * 180.02562 * 13 12 10 15 15 C 1.39308 * 120.07203 * 0.02562 * 14 13 12 16 16 S 1.76207 * 119.92791 * 179.97438 * 15 14 13 17 17 C 1.81399 * 102.99967 * 179.97438 * 16 15 14 18 18 F 1.39905 * 109.47243 * 300.00158 * 17 16 15 19 19 F 1.39898 * 109.47339 * 59.99959 * 17 16 15 20 20 C 1.39315 * 120.14265 * 0.23133 * 15 14 13 21 21 C 1.36601 * 120.07162 * 359.48424 * 20 15 14 22 22 H 0.96993 * 120.00097 * 359.97438 * 1 2 3 23 23 H 0.97003 * 120.00089 * 359.97438 * 9 7 2 24 24 H 1.07998 * 120.02955 * 359.97438 * 13 12 10 25 25 H 1.08002 * 119.96067 * 179.97438 * 14 13 12 26 26 H 1.09001 * 109.47190 * 179.97438 * 17 16 15 27 27 H 1.08001 * 119.96418 * 179.72204 * 20 15 14 28 28 H 1.07997 * 120.03824 * 180.22776 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.4953 2.0465 -1.4001 5 1 1.4452 2.6527 0.7001 6 1 3.5454 1.4403 0.7000 7 6 2.0091 -1.2038 0.0005 8 1 1.4691 -2.1392 0.0005 9 7 3.3781 -1.2038 0.0000 10 6 4.0520 -2.3710 0.0000 11 8 3.4439 -3.4244 0.0010 12 6 5.5257 -2.3709 0.0000 13 6 6.2268 -3.5816 -0.0005 14 6 7.5927 -3.5781 0.0000 15 6 8.2877 -2.3708 0.0016 16 16 10.0498 -2.3707 0.0030 17 6 10.4578 -0.6032 0.0041 18 9 9.9209 0.0001 -1.1384 19 9 9.9192 -0.0010 1.1462 20 6 7.5926 -1.1635 0.0076 21 6 6.2266 -1.1601 0.0012 22 1 -0.4850 0.8400 0.0004 23 1 3.8631 -0.3637 -0.0011 24 1 5.6884 -4.5179 -0.0005 25 1 8.1345 -4.5125 0.0000 26 1 11.5408 -0.4803 0.0054 27 1 8.1343 -0.2292 0.0133 28 1 5.6883 -0.2238 0.0021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749608374.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:28 Heat of formation + Delta-G solvation = -115.916973 kcal Electronic energy + Delta-G solvation = -17959.000065 eV Core-core repulsion = 14543.668390 eV Total energy + Delta-G solvation = -3415.331675 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 273.038 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.34679 -48.34990 -41.09274 -39.23853 -36.23667 -34.03943 -32.33517 -32.28618 -28.01787 -27.44119 -24.76965 -23.70496 -21.54384 -20.77928 -19.74368 -18.99037 -18.52377 -18.37859 -17.57259 -17.13083 -16.25700 -15.83424 -15.76699 -15.36032 -15.25424 -15.06322 -14.68186 -14.67675 -14.56114 -14.24500 -14.07348 -13.73931 -13.08346 -12.60357 -12.48105 -12.20767 -12.03508 -11.67608 -11.50527 -11.08799 -10.70097 -10.39589 -10.26031 -8.83890 -8.54561 -6.11839 -0.43933 -0.29024 0.25656 0.61280 1.23060 1.29082 1.36986 1.80626 2.12754 2.65204 2.71871 2.79546 3.15216 3.34379 3.42021 3.60216 3.72350 3.91679 4.16694 4.31582 4.44551 4.81203 4.98201 5.05955 5.26113 5.44782 5.63397 5.82640 6.43106 6.70811 7.20594 7.75780 8.61842 Molecular weight = 273.04amu Principal moments of inertia in cm(-1) A = 0.024878 B = 0.005051 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.221997 B = 5541.949255 C = 6492.678048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.954 3.046 4 H -0.251 1.251 5 H -0.264 1.264 6 H -0.236 1.236 7 C -0.333 4.333 8 H 0.064 0.936 9 N -0.568 5.568 10 C 0.477 3.523 11 O -0.624 6.624 12 C -0.120 4.120 13 C -0.061 4.061 14 C -0.087 4.087 15 C -0.094 4.094 16 S -0.072 6.072 17 C 0.267 3.733 18 F -0.190 7.190 19 F -0.190 7.190 20 C -0.125 4.125 21 C -0.085 4.085 22 H 0.285 0.715 23 H 0.388 0.612 24 H 0.135 0.865 25 H 0.163 0.837 26 H 0.209 0.791 27 H 0.144 0.856 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.310 2.975 0.014 27.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.206 4.206 3 Si 0.773 3.227 4 H -0.175 1.175 5 H -0.188 1.188 6 H -0.160 1.160 7 C -0.462 4.462 8 H 0.082 0.918 9 N -0.207 5.207 10 C 0.267 3.733 11 O -0.512 6.512 12 C -0.125 4.125 13 C -0.082 4.082 14 C -0.109 4.109 15 C -0.207 4.207 16 S 0.166 5.834 17 C 0.104 3.896 18 F -0.172 7.172 19 F -0.172 7.172 20 C -0.147 4.147 21 C -0.106 4.106 22 H 0.095 0.905 23 H 0.225 0.775 24 H 0.153 0.847 25 H 0.181 0.819 26 H 0.226 0.774 27 H 0.162 0.838 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 27.523 1.607 0.016 27.569 hybrid contribution -1.629 1.857 0.007 2.470 sum 25.894 3.463 0.023 26.124 Atomic orbital electron populations 1.69753 1.07973 1.29815 1.47913 1.26115 0.96515 1.02557 0.95441 0.85528 0.79621 0.77054 0.80512 1.17471 1.18820 1.15977 1.19117 0.80964 0.95581 1.50546 0.91787 1.41989 1.06272 1.07404 1.65019 1.18346 0.87883 0.83702 0.83396 1.90613 1.70889 1.32339 1.57394 1.20127 0.91730 0.95735 1.04911 1.20994 0.94082 0.97420 0.95729 1.20663 0.92787 0.97468 1.00021 1.21993 0.97209 0.96714 1.04797 1.86088 0.98628 1.06470 1.92218 1.24921 1.02227 0.89802 0.72619 1.93113 1.88548 1.84889 1.50641 1.93110 1.88480 1.84934 1.50678 1.21138 0.94323 0.97455 1.01830 1.21067 0.94584 0.97083 0.97851 0.90519 0.77469 0.84710 0.81910 0.77447 0.83836 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.41 13.96 21.68 0.30 -54.11 15 2 C -0.01 -0.29 5.50 84.95 0.47 0.18 15 3 Si 0.95 38.64 27.74 68.60 1.90 40.54 15 4 H -0.25 -9.56 7.11 99.48 0.71 -8.85 15 5 H -0.26 -10.35 7.11 99.48 0.71 -9.64 15 6 H -0.24 -8.28 6.52 99.48 0.65 -7.63 15 7 C -0.33 -19.88 10.16 84.09 0.85 -19.03 15 8 H 0.06 4.49 7.38 -2.91 -0.02 4.46 15 9 N -0.57 -28.58 5.03 -310.02 -1.56 -30.14 15 10 C 0.48 23.79 7.71 86.65 0.67 24.46 15 11 O -0.62 -36.68 15.91 -4.17 -0.07 -36.75 15 12 C -0.12 -4.56 5.88 -20.07 -0.12 -4.68 15 13 C -0.06 -2.00 9.54 22.29 0.21 -1.79 15 14 C -0.09 -2.17 9.73 22.14 0.22 -1.96 15 15 C -0.09 -2.25 6.13 22.79 0.14 -2.11 15 16 S -0.07 -1.14 22.16 -56.49 -1.25 -2.39 15 17 C 0.27 3.16 5.37 113.37 0.61 3.77 15 18 F -0.19 -3.14 15.65 44.97 0.70 -2.43 15 19 F -0.19 -3.14 15.62 44.97 0.70 -2.44 15 20 C -0.12 -3.27 8.62 22.15 0.19 -3.08 15 21 C -0.09 -2.68 9.49 22.29 0.21 -2.47 15 22 H 0.28 15.31 8.31 -92.71 -0.77 14.54 15 23 H 0.39 16.49 3.77 -92.71 -0.35 16.14 15 24 H 0.14 4.56 7.64 -2.91 -0.02 4.54 15 25 H 0.16 3.02 8.06 -2.91 -0.02 3.00 15 26 H 0.21 0.32 8.14 -2.39 -0.02 0.30 15 27 H 0.14 3.28 4.53 -2.91 -0.01 3.27 15 28 H 0.14 3.93 6.39 -2.91 -0.02 3.91 15 Total: -1.00 -75.41 269.15 5.01 -70.40 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.82 Total: 24.03 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 3.45 Total: -6.71 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -1.26 Total: -84.25 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -0.07 Total: -36.75 kcal Atomic # 9 Polarization: -6.28 SS G_CDS: 1.41 Total: -4.87 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.90 Total: 40.54 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -1.25 Total: -2.39 kcal Total: -75.41 5.01 -70.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749608374.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.517 kcal (2) G-P(sol) polarization free energy of solvation -75.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds