Wall clock time and date at job start Mon Mar 30 2020 01:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47040 * 206.01455 * 3 2 1 5 5 C 1.36780 * 120.00215 * 128.00807 * 4 3 2 6 6 H 1.08001 * 120.00195 * 117.53033 * 5 4 3 7 7 C 1.39112 * 120.00106 * 297.80816 * 5 4 3 8 8 N 1.31320 * 119.99812 * 44.63000 * 7 5 4 9 9 Si 1.86796 * 120.00136 * 224.63222 * 7 5 4 10 10 H 1.48509 * 109.47355 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47260 * 119.99916 * 9 7 5 12 12 H 1.48505 * 109.47226 * 240.00042 * 9 7 5 13 13 C 1.34780 * 120.00326 * 308.01033 * 4 3 2 14 14 O 1.21608 * 120.00630 * 185.87363 * 13 4 3 15 15 C 1.47604 * 119.99534 * 5.86658 * 13 4 3 16 16 C 1.39795 * 120.02481 * 338.98695 * 15 13 4 17 17 C 1.37585 * 120.03174 * 179.72000 * 16 15 13 18 18 C 1.39795 * 120.07188 * 0.55079 * 17 16 15 19 19 C 1.43197 * 119.97944 * 179.69928 * 18 17 16 20 20 N 6.26660 * 56.18479 * 120.73946 * 2 1 3 21 21 C 1.39586 * 120.04181 * 359.72153 * 18 17 16 22 22 C 1.38048 * 119.97200 * 0.02562 * 21 18 17 23 23 F 1.35101 * 120.03693 * 179.97438 * 22 21 18 24 24 H 1.09000 * 109.47558 * 86.01467 * 3 2 1 25 25 H 1.08999 * 109.47305 * 326.01113 * 3 2 1 26 26 H 0.96997 * 120.00191 * 180.02562 * 8 7 5 27 27 H 1.08004 * 119.98695 * 359.97438 * 16 15 13 28 28 H 1.07993 * 119.96381 * 180.25502 * 17 16 15 29 29 H 1.08004 * 120.01680 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.2421 0.6058 5 6 4.0114 1.1942 1.6207 6 1 4.9881 1.6356 1.4882 7 6 3.6866 0.5718 2.8217 8 7 3.0770 -0.5912 2.8147 9 14 4.1177 1.3906 4.4444 10 1 4.7965 2.6849 4.1810 11 1 2.8761 1.6316 5.2225 12 1 5.0239 0.5058 5.2199 13 6 2.6422 2.4316 0.1631 14 8 3.1239 3.4633 0.5902 15 6 1.5608 2.4820 -0.8403 16 6 1.3046 1.3708 -1.6489 17 6 0.2929 1.4156 -2.5803 18 6 -0.4728 2.5759 -2.7276 19 6 -1.5211 2.6226 -3.7020 20 7 -2.3514 2.6612 -4.4750 21 6 -0.2159 3.6892 -1.9257 22 6 0.7953 3.6444 -0.9870 23 9 1.0455 4.7213 -0.2105 24 1 2.9714 -0.0706 -1.0252 25 1 2.9717 -0.8512 0.5745 26 1 2.8502 -1.0251 3.6520 27 1 1.8983 0.4753 -1.5397 28 1 0.0932 0.5552 -3.2016 29 1 -0.8080 4.5853 -2.0395 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584455505.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:37 Heat of formation + Delta-G solvation = 75.573657 kcal Electronic energy + Delta-G solvation = -20219.582094 eV Core-core repulsion = 16832.863181 eV Total energy + Delta-G solvation = -3386.718913 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.065 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.58571 -40.42063 -38.22465 -36.75395 -36.16199 -34.65597 -32.57091 -31.20789 -30.61519 -27.97392 -25.90038 -23.94332 -22.78087 -20.29681 -19.38251 -17.81366 -17.53398 -16.47785 -16.36039 -15.88951 -15.47480 -15.30087 -14.83421 -14.30510 -14.04429 -13.95479 -13.73906 -13.47868 -13.19141 -12.91705 -12.59629 -12.34612 -12.16662 -12.10943 -11.82421 -11.69295 -11.54613 -11.08981 -10.87998 -10.50434 -10.37328 -8.98866 -8.85057 -8.71767 -8.67548 -7.82481 -6.92986 -4.35811 0.40895 1.12257 2.51372 2.59353 3.04788 3.08433 3.24763 3.33268 3.37588 3.54057 3.63458 3.90706 4.06593 4.31042 4.39182 4.55045 4.62020 4.65144 4.87241 5.14917 5.17720 5.45765 5.73942 5.89735 5.93502 6.05747 6.08516 6.39940 6.70024 7.22429 7.32031 8.01336 8.14783 8.15840 8.79305 8.88291 9.59588 10.14225 Molecular weight = 273.07amu Principal moments of inertia in cm(-1) A = 0.027576 B = 0.006250 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.125659 B = 4478.794525 C = 5093.667616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.212 3.788 3 C 0.167 3.833 4 N -0.428 5.428 5 C -0.368 4.368 6 H 0.098 0.902 7 C 0.093 3.907 8 N -0.815 5.815 9 Si 0.883 3.117 10 H -0.257 1.257 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.512 3.488 14 O -0.532 6.532 15 C -0.125 4.125 16 C -0.110 4.110 17 C -0.084 4.084 18 C 0.006 3.994 19 C 0.263 3.737 20 N -0.418 5.418 21 C -0.122 4.122 22 C 0.150 3.850 23 F -0.112 7.112 24 H 0.095 0.905 25 H 0.151 0.849 26 H 0.278 0.722 27 H 0.184 0.816 28 H 0.139 0.861 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.131 -0.450 -7.333 7.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.104 4.104 3 C 0.042 3.958 4 N -0.150 5.150 5 C -0.493 4.493 6 H 0.115 0.885 7 C -0.122 4.122 8 N -0.444 5.444 9 Si 0.706 3.294 10 H -0.181 1.181 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.300 3.700 14 O -0.411 6.411 15 C -0.131 4.131 16 C -0.128 4.128 17 C -0.105 4.105 18 C 0.002 3.998 19 C -0.052 4.052 20 N -0.093 5.093 21 C -0.144 4.144 22 C 0.129 3.871 23 F -0.090 7.090 24 H 0.112 0.888 25 H 0.168 0.832 26 H 0.089 0.911 27 H 0.200 0.800 28 H 0.157 0.843 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.892 -0.032 -8.139 9.022 hybrid contribution 0.690 0.340 1.375 1.575 sum -3.202 0.308 -6.764 7.490 Atomic orbital electron populations 1.81160 1.13148 1.08514 1.09720 1.29387 0.96213 0.92971 0.91790 1.20253 0.79967 0.95643 0.99892 1.43073 1.38138 1.00787 1.33051 1.18834 0.97203 1.43410 0.89826 0.88451 1.25667 0.93479 0.92873 1.00170 1.69986 1.34913 1.09637 1.29864 0.86676 0.78883 0.81820 0.81974 1.18087 1.20269 1.20743 1.18171 0.83054 0.85394 0.83395 1.90721 1.58849 1.32417 1.59149 1.20783 0.99336 0.93598 0.99357 1.22788 0.97785 0.99210 0.92992 1.21021 0.94642 0.96569 0.98282 1.15695 0.93843 0.95488 0.94795 1.25519 0.92999 0.93618 0.93075 1.81194 1.10248 1.07559 1.10343 1.20926 0.98339 0.99224 0.95927 1.17310 0.95030 0.83775 0.90954 1.91601 1.93105 1.51967 1.72330 0.88821 0.83202 0.91095 0.80023 0.84335 0.83675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.32 17.23 41.93 0.72 -7.60 15 2 C 0.21 3.71 10.43 -20.76 -0.22 3.49 15 3 C 0.17 2.81 5.25 -6.83 -0.04 2.77 15 4 N -0.43 -9.15 2.75 -123.29 -0.34 -9.49 15 5 C -0.37 -8.73 8.35 -15.02 -0.13 -8.86 15 6 H 0.10 2.39 8.06 -52.49 -0.42 1.97 15 7 C 0.09 2.17 5.40 -17.45 -0.09 2.08 15 8 N -0.81 -18.55 11.82 55.50 0.66 -17.90 15 9 Si 0.88 18.93 29.69 -169.99 -5.05 13.88 15 10 H -0.26 -5.76 7.11 56.52 0.40 -5.36 15 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 12 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15 13 C 0.51 11.24 7.29 -12.44 -0.09 11.15 15 14 O -0.53 -13.61 15.57 5.27 0.08 -13.53 15 15 C -0.12 -2.23 5.14 -104.85 -0.54 -2.77 15 16 C -0.11 -1.58 5.62 -39.24 -0.22 -1.80 15 17 C -0.08 -1.05 9.29 -39.24 -0.36 -1.41 15 18 C 0.01 0.07 5.73 -106.89 -0.61 -0.54 15 19 C 0.26 3.48 15.31 -22.50 -0.34 3.13 15 20 N -0.42 -6.18 18.53 41.80 0.77 -5.40 15 21 C -0.12 -1.67 9.71 -39.15 -0.38 -2.05 15 22 C 0.15 2.56 7.24 -39.01 -0.28 2.28 15 23 F -0.11 -2.15 15.75 2.25 0.04 -2.11 15 24 H 0.09 1.14 6.20 -51.93 -0.32 0.82 15 25 H 0.15 2.68 6.30 -51.93 -0.33 2.35 15 26 H 0.28 6.05 8.31 -40.82 -0.34 5.71 15 27 H 0.18 2.31 2.66 -59.98 -0.16 2.15 15 28 H 0.14 1.37 8.06 -52.49 -0.42 0.95 15 29 H 0.15 1.62 8.06 -52.48 -0.42 1.19 15 LS Contribution 275.06 15.07 4.15 4.15 Total: -1.00 -28.38 275.06 -3.49 -31.87 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -1.21 Total: -1.34 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -3.31 Total: 7.47 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 1.81 Total: -40.38 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.08 Total: -13.53 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.05 Total: 13.88 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.38 -3.49 -31.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584455505.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.441 kcal (2) G-P(sol) polarization free energy of solvation -28.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds