Wall clock time and date at job start Mon Mar 30 2020 01:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47040 * 206.01455 * 3 2 1 5 5 C 1.36780 * 120.00215 * 128.00807 * 4 3 2 6 6 H 1.08001 * 120.00195 * 117.53033 * 5 4 3 7 7 C 1.39112 * 120.00106 * 297.80816 * 5 4 3 8 8 N 1.31320 * 119.99812 * 44.63000 * 7 5 4 9 9 Si 1.86796 * 120.00136 * 224.63222 * 7 5 4 10 10 H 1.48509 * 109.47355 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47260 * 119.99916 * 9 7 5 12 12 H 1.48505 * 109.47226 * 240.00042 * 9 7 5 13 13 C 1.34780 * 120.00326 * 308.01033 * 4 3 2 14 14 O 1.21608 * 120.00630 * 185.87363 * 13 4 3 15 15 C 1.47604 * 119.99534 * 5.86658 * 13 4 3 16 16 C 1.39795 * 120.02481 * 338.98695 * 15 13 4 17 17 C 1.37585 * 120.03174 * 179.72000 * 16 15 13 18 18 C 1.39795 * 120.07188 * 0.55079 * 17 16 15 19 19 C 1.43197 * 119.97944 * 179.69928 * 18 17 16 20 20 N 6.26660 * 56.18479 * 120.73946 * 2 1 3 21 21 C 1.39586 * 120.04181 * 359.72153 * 18 17 16 22 22 C 1.38048 * 119.97200 * 0.02562 * 21 18 17 23 23 F 1.35101 * 120.03693 * 179.97438 * 22 21 18 24 24 H 1.09000 * 109.47558 * 86.01467 * 3 2 1 25 25 H 1.08999 * 109.47305 * 326.01113 * 3 2 1 26 26 H 0.96997 * 120.00191 * 180.02562 * 8 7 5 27 27 H 1.08004 * 119.98695 * 359.97438 * 16 15 13 28 28 H 1.07993 * 119.96381 * 180.25502 * 17 16 15 29 29 H 1.08004 * 120.01680 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.2421 0.6058 5 6 4.0114 1.1942 1.6207 6 1 4.9881 1.6356 1.4882 7 6 3.6866 0.5718 2.8217 8 7 3.0770 -0.5912 2.8147 9 14 4.1177 1.3906 4.4444 10 1 4.7965 2.6849 4.1810 11 1 2.8761 1.6316 5.2225 12 1 5.0239 0.5058 5.2199 13 6 2.6422 2.4316 0.1631 14 8 3.1239 3.4633 0.5902 15 6 1.5608 2.4820 -0.8403 16 6 1.3046 1.3708 -1.6489 17 6 0.2929 1.4156 -2.5803 18 6 -0.4728 2.5759 -2.7276 19 6 -1.5211 2.6226 -3.7020 20 7 -2.3514 2.6612 -4.4750 21 6 -0.2159 3.6892 -1.9257 22 6 0.7953 3.6444 -0.9870 23 9 1.0455 4.7213 -0.2105 24 1 2.9714 -0.0706 -1.0252 25 1 2.9717 -0.8512 0.5745 26 1 2.8502 -1.0251 3.6520 27 1 1.8983 0.4753 -1.5397 28 1 0.0932 0.5552 -3.2016 29 1 -0.8080 4.5853 -2.0395 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584455505.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:37 Heat of formation + Delta-G solvation = 59.179097 kcal Electronic energy + Delta-G solvation = -20220.293016 eV Core-core repulsion = 16832.863181 eV Total energy + Delta-G solvation = -3387.429835 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.065 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.94850 -41.80210 -39.59222 -38.21106 -37.39167 -36.28409 -34.21890 -32.55169 -31.80003 -29.44577 -27.43483 -25.37813 -23.99488 -21.80497 -20.59425 -19.46312 -18.98040 -17.84494 -17.64722 -17.26527 -16.86177 -16.73451 -16.30898 -15.83154 -15.57032 -15.36179 -15.07106 -14.74496 -14.49910 -14.18930 -13.95929 -13.85033 -13.58309 -13.45493 -13.32548 -13.17814 -13.01911 -12.56083 -12.36852 -12.15853 -11.83409 -10.70295 -10.49684 -10.08542 -9.88120 -9.51486 -8.70234 -6.15854 -0.78655 -0.02201 1.30828 1.37642 1.44415 1.47695 1.55692 1.71525 1.96169 2.19336 2.26445 2.49749 2.62893 2.70438 2.97525 3.17691 3.18642 3.52013 3.80510 3.84528 4.00281 4.27241 4.54794 4.70170 4.83517 4.91453 4.94715 5.02116 5.45562 5.51297 6.25858 6.33009 6.50206 6.62903 7.08774 7.13615 7.89392 8.36070 Molecular weight = 273.07amu Principal moments of inertia in cm(-1) A = 0.027576 B = 0.006250 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.125659 B = 4478.794525 C = 5093.667616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.223 3.777 3 C 0.170 3.830 4 N -0.438 5.438 5 C -0.391 4.391 6 H 0.076 0.924 7 C 0.072 3.928 8 N -0.817 5.817 9 Si 0.919 3.081 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.502 3.498 14 O -0.585 6.585 15 C -0.146 4.146 16 C -0.104 4.104 17 C -0.067 4.067 18 C 0.018 3.982 19 C 0.284 3.716 20 N -0.438 5.438 21 C -0.106 4.106 22 C 0.125 3.875 23 F -0.133 7.133 24 H 0.151 0.849 25 H 0.144 0.856 26 H 0.283 0.717 27 H 0.201 0.799 28 H 0.176 0.824 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.361 -1.813 -9.015 9.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.092 4.092 3 C 0.046 3.954 4 N -0.159 5.159 5 C -0.516 4.516 6 H 0.094 0.906 7 C -0.143 4.143 8 N -0.446 5.446 9 Si 0.743 3.257 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.189 1.189 13 C 0.292 3.708 14 O -0.468 6.468 15 C -0.152 4.152 16 C -0.121 4.121 17 C -0.088 4.088 18 C 0.014 3.986 19 C -0.031 4.031 20 N -0.113 5.113 21 C -0.128 4.128 22 C 0.104 3.896 23 F -0.112 7.112 24 H 0.168 0.832 25 H 0.161 0.839 26 H 0.094 0.906 27 H 0.217 0.783 28 H 0.194 0.806 29 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.126 -1.443 -9.823 11.174 hybrid contribution 1.006 0.782 1.810 2.214 sum -4.120 -0.661 -8.013 9.035 Atomic orbital electron populations 1.81170 1.13594 1.09022 1.10439 1.29373 0.96135 0.92406 0.91251 1.20438 0.79515 0.92925 1.02547 1.43132 1.37747 1.02155 1.32832 1.18650 0.97165 1.44150 0.91643 0.90638 1.25930 0.94032 0.93181 1.01112 1.69970 1.35000 1.09306 1.30365 0.86127 0.78355 0.80550 0.80633 1.20413 1.21047 1.18881 1.18801 0.83347 0.84859 0.83744 1.90671 1.60678 1.34163 1.61305 1.20549 0.99009 0.95553 1.00073 1.22911 0.98349 0.98392 0.92483 1.21416 0.92819 0.97375 0.97209 1.15710 0.93411 0.95378 0.94076 1.25270 0.92437 0.92918 0.92487 1.81246 1.10843 1.08240 1.11007 1.21092 0.96983 1.00418 0.94285 1.17624 0.96543 0.83282 0.92159 1.91544 1.93474 1.52933 1.73204 0.83244 0.83895 0.90589 0.78346 0.80625 0.81205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -16.05 17.23 19.30 0.33 -15.71 15 2 C 0.22 7.27 10.43 89.44 0.93 8.21 15 3 C 0.17 5.35 5.25 84.57 0.44 5.79 15 4 N -0.44 -18.65 2.75 -662.22 -1.82 -20.47 15 5 C -0.39 -18.94 8.35 84.13 0.70 -18.24 15 6 H 0.08 3.90 8.06 -2.91 -0.02 3.88 15 7 C 0.07 3.36 5.40 84.98 0.46 3.82 15 8 N -0.82 -36.64 11.82 21.69 0.26 -36.38 15 9 Si 0.92 39.33 29.69 68.60 2.04 41.37 15 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 15 12 H -0.26 -10.46 7.11 99.48 0.71 -9.75 15 13 C 0.50 22.37 7.29 86.72 0.63 23.01 15 14 O -0.59 -31.25 15.57 -4.06 -0.06 -31.32 15 15 C -0.15 -5.08 5.14 -20.01 -0.10 -5.18 15 16 C -0.10 -2.65 5.62 22.49 0.13 -2.53 15 17 C -0.07 -1.39 9.29 22.49 0.21 -1.18 15 18 C 0.02 0.40 5.73 -21.33 -0.12 0.28 15 19 C 0.28 6.43 15.31 88.34 1.35 7.78 15 20 N -0.44 -11.52 18.53 18.99 0.35 -11.17 15 21 C -0.11 -2.63 9.71 22.55 0.22 -2.41 15 22 C 0.12 4.15 7.24 22.64 0.16 4.32 15 23 F -0.13 -5.23 15.75 44.97 0.71 -4.52 15 24 H 0.15 3.06 6.20 -2.39 -0.01 3.04 15 25 H 0.14 4.84 6.30 -2.39 -0.02 4.83 15 26 H 0.28 12.03 8.31 -92.71 -0.77 11.26 15 27 H 0.20 4.25 2.66 -9.95 -0.03 4.23 15 28 H 0.18 2.41 8.06 -2.91 -0.02 2.39 15 29 H 0.17 3.29 8.06 -2.91 -0.02 3.27 15 Total: -1.00 -63.31 275.06 8.04 -55.27 By element: Atomic # 1 Polarization: -1.95 SS G_CDS: 1.22 Total: -0.73 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: 5.02 Total: 23.67 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -0.88 Total: -83.74 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.06 Total: -31.32 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.71 Total: -4.52 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.04 Total: 41.37 kcal Total: -63.31 8.04 -55.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584455505.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.445 kcal (2) G-P(sol) polarization free energy of solvation -63.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds