Wall clock time and date at job start Mon Mar 30 2020 01:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.37718 * 119.95985 * 2 1 4 4 C 1.39778 * 119.91704 * 180.27750 * 3 2 1 5 5 C 1.47484 * 120.08893 * 180.02562 * 4 3 2 6 6 O 1.21527 * 119.99800 * 359.97338 * 5 4 3 7 7 O 1.34751 * 120.00020 * 179.97438 * 5 4 3 8 8 C 1.34854 * 117.00348 * 179.97438 * 7 5 4 9 9 H 1.08007 * 119.99726 * 359.97438 * 8 7 5 10 10 C 1.38806 * 120.00479 * 180.02562 * 8 7 5 11 11 N 1.31425 * 120.00004 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99939 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.47010 * 90.00233 * 12 10 8 14 14 H 1.48501 * 109.47176 * 210.00339 * 12 10 8 15 15 H 1.48502 * 109.47310 * 330.00570 * 12 10 8 16 16 C 1.39813 * 119.82506 * 359.97438 * 4 3 2 17 17 C 1.37685 * 119.91492 * 0.02562 * 16 4 3 18 18 C 1.39050 * 119.95647 * 180.27751 * 2 1 3 19 19 N 1.39849 * 119.91352 * 359.72475 * 18 2 1 20 20 C 1.34811 * 126.84447 * 132.80991 * 19 18 2 21 21 N 1.30819 * 108.01724 * 180.02562 * 20 19 18 22 22 C 1.33295 * 109.84812 * 359.97438 * 21 20 19 23 23 N 1.30729 * 109.01351 * 359.71863 * 22 21 20 24 24 H 1.09008 * 109.47370 * 264.40337 * 1 2 3 25 25 H 1.09003 * 109.47465 * 24.39634 * 1 2 3 26 26 H 1.08997 * 109.47339 * 144.40447 * 1 2 3 27 27 H 1.08000 * 120.04286 * 0.25571 * 3 2 1 28 28 H 0.96993 * 119.99419 * 179.97438 * 11 10 8 29 29 H 1.08000 * 120.04903 * 180.02562 * 16 4 3 30 30 H 1.07995 * 119.95950 * 180.02562 * 17 16 4 31 31 H 1.07997 * 125.99246 * 359.97438 * 20 19 18 32 32 H 1.07998 * 125.49637 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1947 1.1932 0.0000 4 6 3.5924 1.1921 -0.0059 5 6 4.3328 2.4677 -0.0053 6 8 3.7275 3.5215 -0.0002 7 8 5.6803 2.4646 -0.0105 8 6 6.2953 3.6647 -0.0102 9 1 5.7092 4.5719 -0.0064 10 6 7.6816 3.7342 -0.0158 11 7 8.2810 4.9038 -0.0150 12 14 8.6954 2.1653 -0.0231 13 1 8.9582 1.7523 -1.4252 14 1 9.9853 2.4062 0.6720 15 1 7.9486 1.0900 0.6778 16 6 4.2869 -0.0213 -0.0112 17 6 3.5921 -1.2101 -0.0111 18 6 2.2012 -1.2047 -0.0058 19 7 1.4993 -2.4143 -0.0059 20 6 1.7243 -3.4795 -0.8009 21 7 0.8556 -4.4070 -0.4902 22 6 0.0645 -3.9753 0.4920 23 7 0.4234 -2.7637 0.8266 24 1 -0.3634 -0.1002 1.0228 25 1 -0.3634 0.9359 -0.4245 26 1 -0.3634 -0.8356 -0.5981 27 1 1.6547 2.1285 0.0042 28 1 9.2497 4.9523 -0.0186 29 1 5.3668 -0.0264 -0.0153 30 1 4.1278 -2.1478 -0.0148 31 1 2.4873 -3.5539 -1.5615 32 1 -0.7398 -4.5379 0.9425 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745410501.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:02 Heat of formation + Delta-G solvation = 46.388982 kcal Electronic energy + Delta-G solvation = -19709.298703 eV Core-core repulsion = 16444.774552 eV Total energy + Delta-G solvation = -3264.524151 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.49699 -39.92933 -38.70614 -35.56165 -34.21111 -32.98536 -32.46295 -31.49293 -29.95792 -27.18589 -26.03991 -24.27209 -22.68861 -22.08127 -21.44284 -20.00321 -18.36086 -18.13913 -17.16676 -16.27346 -15.82285 -15.42516 -14.91892 -14.81678 -14.43823 -14.38045 -14.07197 -13.78054 -13.33996 -13.02129 -12.66609 -12.57897 -12.28869 -12.08442 -11.82455 -11.48195 -11.28827 -10.69949 -10.54682 -10.42861 -10.32689 -10.06278 -9.86260 -9.39935 -8.99951 -8.84327 -8.62719 -6.54797 -4.24975 0.44033 1.20995 1.49568 2.03888 2.67722 2.94482 3.13207 3.15529 3.24226 3.88197 3.94034 4.04650 4.10056 4.43718 4.57009 4.65271 4.80965 4.98580 5.13159 5.23491 5.33922 5.41545 5.55107 5.62791 5.82052 5.91641 6.03187 6.17056 6.21017 6.26585 6.49935 6.52990 6.86140 7.55576 7.77661 7.86753 8.46445 8.81979 9.49416 10.52567 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.032067 B = 0.004269 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.969771 B = 6557.165431 C = 7330.058135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.072 4.072 3 C -0.058 4.058 4 C -0.068 4.068 5 C 0.438 3.562 6 O -0.533 6.533 7 O -0.238 6.238 8 C -0.372 4.372 9 H 0.113 0.887 10 C 0.066 3.934 11 N -0.862 5.862 12 Si 0.906 3.094 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.258 1.258 16 C -0.069 4.069 17 C -0.118 4.118 18 C 0.133 3.867 19 N -0.325 5.325 20 C 0.263 3.737 21 N -0.543 5.543 22 C 0.195 3.805 23 N -0.307 5.307 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.147 0.853 28 H 0.283 0.717 29 H 0.149 0.851 30 H 0.135 0.865 31 H 0.222 0.778 32 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.067 -16.351 -1.062 19.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.074 4.074 3 C -0.077 4.077 4 C -0.070 4.070 5 C 0.286 3.714 6 O -0.430 6.430 7 O -0.146 6.146 8 C -0.447 4.447 9 H 0.131 0.869 10 C -0.140 4.140 11 N -0.500 5.500 12 Si 0.730 3.270 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.182 1.182 16 C -0.088 4.088 17 C -0.138 4.138 18 C 0.041 3.959 19 N -0.110 5.110 20 C -0.032 4.032 21 N -0.270 5.270 22 C -0.107 4.107 23 N -0.133 5.133 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.165 0.835 28 H 0.093 0.907 29 H 0.166 0.834 30 H 0.153 0.847 31 H 0.238 0.762 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -11.365 -15.844 -0.641 19.510 hybrid contribution 0.846 -0.458 -0.105 0.968 sum -10.519 -16.302 -0.746 19.416 Atomic orbital electron populations 1.20710 0.89788 1.02450 1.03143 1.19662 0.96892 0.90744 1.00145 1.21069 0.92455 0.97859 0.96273 1.19540 0.93233 0.92198 1.02009 1.20298 0.82107 0.88247 0.80786 1.90694 1.69154 1.32982 1.50165 1.83513 1.18979 1.36149 1.76006 1.20761 0.90612 0.82592 1.50756 0.86945 1.24610 0.95660 0.98298 0.95389 1.69589 1.10894 1.23795 1.45699 0.86210 0.79119 0.82500 0.79134 1.19558 1.20488 1.18223 1.21394 1.01294 0.90191 0.95910 1.20921 0.90958 0.99464 1.02499 1.17387 0.90029 0.82138 1.06322 1.47555 1.24846 1.12112 1.26474 1.26285 0.98646 0.82617 0.95685 1.70608 1.08410 1.30224 1.17748 1.26133 0.99539 0.91037 0.94005 1.78251 1.02965 1.16608 1.15450 0.90219 0.91106 0.91998 0.83522 0.90656 0.83365 0.84692 0.76221 0.76435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 8.86 36.00 0.32 -0.87 16 2 C -0.07 -0.97 5.89 -104.52 -0.62 -1.58 16 3 C -0.06 -0.89 9.21 -39.20 -0.36 -1.25 16 4 C -0.07 -1.20 5.88 -104.97 -0.62 -1.82 16 5 C 0.44 10.12 7.83 34.50 0.27 10.39 16 6 O -0.53 -13.86 15.59 -19.29 -0.30 -14.16 16 7 O -0.24 -6.01 7.81 -21.69 -0.17 -6.17 16 8 C -0.37 -10.62 10.11 30.94 0.31 -10.31 16 9 H 0.11 3.55 7.09 -52.48 -0.37 3.18 16 10 C 0.07 1.80 5.50 -17.52 -0.10 1.70 16 11 N -0.86 -24.48 13.96 55.49 0.77 -23.70 16 12 Si 0.91 20.13 28.62 -169.99 -4.86 15.27 16 13 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 16 C -0.07 -1.02 9.61 -39.19 -0.38 -1.39 16 17 C -0.12 -1.42 9.63 -39.47 -0.38 -1.80 16 18 C 0.13 1.68 6.27 -83.58 -0.52 1.16 16 19 N -0.33 -3.85 3.11 -11.76 -0.04 -3.89 16 20 C 0.26 2.62 12.31 -90.32 -1.11 1.51 16 21 N -0.54 -6.03 11.19 -15.73 -0.18 -6.20 16 22 C 0.20 2.01 13.03 -91.75 -1.20 0.82 16 23 N -0.31 -3.77 11.10 29.30 0.33 -3.45 16 24 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 25 H 0.07 0.71 8.05 -51.93 -0.42 0.30 16 26 H 0.06 0.72 7.23 -51.93 -0.38 0.34 16 27 H 0.15 2.23 7.64 -52.49 -0.40 1.83 16 28 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.15 2.17 7.60 -52.49 -0.40 1.77 16 30 H 0.14 1.24 8.03 -52.49 -0.42 0.82 16 31 H 0.22 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.22 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 295.01 15.07 4.45 4.45 Total: -1.00 -32.75 295.01 -7.17 -39.92 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -2.79 Total: 1.38 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -4.38 Total: -3.44 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.89 Total: -37.24 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.47 Total: -20.33 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.86 Total: 15.27 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.75 -7.17 -39.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745410501.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.306 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds