Wall clock time and date at job start Mon Mar 30 2020 01:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.37718 * 119.95985 * 2 1 4 4 C 1.39778 * 119.91704 * 180.27750 * 3 2 1 5 5 C 1.47484 * 120.08893 * 180.02562 * 4 3 2 6 6 O 1.21527 * 119.99800 * 359.97338 * 5 4 3 7 7 O 1.34751 * 120.00020 * 179.97438 * 5 4 3 8 8 C 1.34854 * 117.00348 * 179.97438 * 7 5 4 9 9 H 1.08007 * 119.99726 * 359.97438 * 8 7 5 10 10 C 1.38806 * 120.00479 * 180.02562 * 8 7 5 11 11 N 1.31425 * 120.00004 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99939 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.47010 * 90.00233 * 12 10 8 14 14 H 1.48501 * 109.47176 * 210.00339 * 12 10 8 15 15 H 1.48502 * 109.47310 * 330.00570 * 12 10 8 16 16 C 1.39813 * 119.82506 * 359.97438 * 4 3 2 17 17 C 1.37685 * 119.91492 * 0.02562 * 16 4 3 18 18 C 1.39050 * 119.95647 * 180.27751 * 2 1 3 19 19 N 1.39849 * 119.91352 * 359.72475 * 18 2 1 20 20 C 1.34811 * 126.84447 * 132.80991 * 19 18 2 21 21 N 1.30819 * 108.01724 * 180.02562 * 20 19 18 22 22 C 1.33295 * 109.84812 * 359.97438 * 21 20 19 23 23 N 1.30729 * 109.01351 * 359.71863 * 22 21 20 24 24 H 1.09008 * 109.47370 * 264.40337 * 1 2 3 25 25 H 1.09003 * 109.47465 * 24.39634 * 1 2 3 26 26 H 1.08997 * 109.47339 * 144.40447 * 1 2 3 27 27 H 1.08000 * 120.04286 * 0.25571 * 3 2 1 28 28 H 0.96993 * 119.99419 * 179.97438 * 11 10 8 29 29 H 1.08000 * 120.04903 * 180.02562 * 16 4 3 30 30 H 1.07995 * 119.95950 * 180.02562 * 17 16 4 31 31 H 1.07997 * 125.99246 * 359.97438 * 20 19 18 32 32 H 1.07998 * 125.49637 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1947 1.1932 0.0000 4 6 3.5924 1.1921 -0.0059 5 6 4.3328 2.4677 -0.0053 6 8 3.7275 3.5215 -0.0002 7 8 5.6803 2.4646 -0.0105 8 6 6.2953 3.6647 -0.0102 9 1 5.7092 4.5719 -0.0064 10 6 7.6816 3.7342 -0.0158 11 7 8.2810 4.9038 -0.0150 12 14 8.6954 2.1653 -0.0231 13 1 8.9582 1.7523 -1.4252 14 1 9.9853 2.4062 0.6720 15 1 7.9486 1.0900 0.6778 16 6 4.2869 -0.0213 -0.0112 17 6 3.5921 -1.2101 -0.0111 18 6 2.2012 -1.2047 -0.0058 19 7 1.4993 -2.4143 -0.0059 20 6 1.7243 -3.4795 -0.8009 21 7 0.8556 -4.4070 -0.4902 22 6 0.0645 -3.9753 0.4920 23 7 0.4234 -2.7637 0.8266 24 1 -0.3634 -0.1002 1.0228 25 1 -0.3634 0.9359 -0.4245 26 1 -0.3634 -0.8356 -0.5981 27 1 1.6547 2.1285 0.0042 28 1 9.2497 4.9523 -0.0186 29 1 5.3668 -0.0264 -0.0153 30 1 4.1278 -2.1478 -0.0148 31 1 2.4873 -3.5539 -1.5615 32 1 -0.7398 -4.5379 0.9425 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745410501.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:01 Heat of formation + Delta-G solvation = 28.397219 kcal Electronic energy + Delta-G solvation = -19710.078884 eV Core-core repulsion = 16444.774552 eV Total energy + Delta-G solvation = -3265.304332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.32456 -41.50278 -40.16380 -37.49434 -35.31654 -34.55559 -33.97772 -32.32890 -31.09720 -28.41776 -27.67130 -25.61257 -23.64626 -23.21594 -22.39178 -21.51112 -20.23460 -19.27666 -18.82335 -17.43401 -17.12902 -16.81606 -16.56776 -16.11586 -15.71480 -15.40109 -15.13268 -14.81641 -14.67364 -14.41492 -14.34114 -13.72963 -13.57362 -13.42690 -13.07735 -12.84136 -12.47054 -12.44678 -12.28092 -11.86681 -11.47304 -11.32513 -11.14111 -10.88880 -10.86770 -10.09104 -9.74889 -8.59054 -6.44671 -0.72045 0.11059 0.61464 1.14142 1.34509 1.35424 1.54220 1.60004 1.92546 2.19859 2.28417 2.49736 2.92911 3.42521 3.50550 3.55735 3.81052 3.90334 3.96506 4.08808 4.21322 4.43426 4.53140 4.64855 4.72221 4.90825 5.05730 5.08015 5.19548 5.24347 5.35753 5.42864 5.51141 5.83646 5.93442 6.43491 6.75093 6.98983 7.47349 8.53362 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.032067 B = 0.004269 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.969771 B = 6557.165431 C = 7330.058135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.076 4.076 3 C -0.055 4.055 4 C -0.102 4.102 5 C 0.446 3.554 6 O -0.572 6.572 7 O -0.241 6.241 8 C -0.408 4.408 9 H 0.058 0.942 10 C 0.017 3.983 11 N -0.912 5.912 12 Si 0.982 3.018 13 H -0.255 1.255 14 H -0.267 1.267 15 H -0.241 1.241 16 C -0.059 4.059 17 C -0.100 4.100 18 C 0.154 3.846 19 N -0.341 5.341 20 C 0.274 3.726 21 N -0.562 5.562 22 C 0.203 3.797 23 N -0.338 5.338 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.138 0.862 28 H 0.292 0.708 29 H 0.154 0.846 30 H 0.176 0.824 31 H 0.259 0.741 32 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.333 -20.979 -1.339 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.078 4.078 3 C -0.074 4.074 4 C -0.103 4.103 5 C 0.295 3.705 6 O -0.469 6.469 7 O -0.149 6.149 8 C -0.484 4.484 9 H 0.076 0.924 10 C -0.184 4.184 11 N -0.550 5.550 12 Si 0.801 3.199 13 H -0.179 1.179 14 H -0.192 1.192 15 H -0.164 1.164 16 C -0.078 4.078 17 C -0.120 4.120 18 C 0.062 3.938 19 N -0.126 5.126 20 C -0.021 4.021 21 N -0.288 5.288 22 C -0.099 4.099 23 N -0.163 5.163 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.082 0.918 27 H 0.156 0.844 28 H 0.102 0.898 29 H 0.171 0.829 30 H 0.194 0.806 31 H 0.275 0.725 32 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -11.672 -20.476 -0.916 23.587 hybrid contribution 0.591 0.815 -0.034 1.007 sum -11.081 -19.661 -0.950 22.589 Atomic orbital electron populations 1.20682 0.88394 1.03047 1.03296 1.19798 0.97864 0.90300 0.99830 1.21014 0.91591 0.98624 0.96142 1.19282 0.93663 0.90473 1.06909 1.21494 0.81587 0.89987 0.77408 1.90663 1.69730 1.35345 1.51183 1.83512 1.19830 1.34030 1.77558 1.20373 0.91272 0.82216 1.54528 0.92439 1.25653 0.96270 1.02647 0.93797 1.69690 1.11797 1.26553 1.46998 0.85100 0.77228 0.77412 0.80187 1.17924 1.19156 1.16398 1.21449 1.01613 0.89820 0.94915 1.21183 0.90615 0.99845 1.00400 1.17509 0.90473 0.82429 1.03407 1.47565 1.25377 1.12113 1.27532 1.27118 0.98484 0.81297 0.95152 1.70687 1.09112 1.30737 1.18267 1.26817 0.99464 0.90509 0.93144 1.78255 1.03659 1.17752 1.16620 0.90109 0.90181 0.91801 0.84385 0.89822 0.82883 0.80622 0.72548 0.73456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.03 8.86 71.23 0.63 -1.40 16 2 C -0.08 -1.87 5.89 -19.80 -0.12 -1.98 16 3 C -0.05 -1.66 9.21 22.52 0.21 -1.45 16 4 C -0.10 -3.56 5.88 -20.09 -0.12 -3.67 16 5 C 0.45 21.49 7.83 70.26 0.55 22.04 16 6 O -0.57 -31.72 15.59 19.75 0.31 -31.41 16 7 O -0.24 -12.52 7.81 11.15 0.09 -12.43 16 8 C -0.41 -24.74 10.11 67.96 0.69 -24.06 16 9 H 0.06 3.99 7.09 -2.91 -0.02 3.97 16 10 C 0.02 0.97 5.50 84.89 0.47 1.43 16 11 N -0.91 -54.01 13.96 21.63 0.30 -53.71 16 12 Si 0.98 41.12 28.62 68.60 1.96 43.09 16 13 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 14 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 15 H -0.24 -9.31 7.11 99.48 0.71 -8.60 16 16 C -0.06 -1.59 9.61 22.52 0.22 -1.38 16 17 C -0.10 -1.98 9.63 22.34 0.22 -1.76 16 18 C 0.15 3.35 6.27 38.26 0.24 3.59 16 19 N -0.34 -6.71 3.11 -191.13 -0.59 -7.30 16 20 C 0.27 4.17 12.31 180.24 2.22 6.39 16 21 N -0.56 -10.19 11.19 -203.68 -2.28 -12.47 16 22 C 0.20 3.44 13.03 180.74 2.35 5.80 16 23 N -0.34 -7.18 11.10 -61.21 -0.68 -7.85 16 24 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 25 H 0.08 1.50 8.05 -2.39 -0.02 1.48 16 26 H 0.06 1.32 7.23 -2.39 -0.02 1.30 16 27 H 0.14 4.34 7.64 -2.91 -0.02 4.32 16 28 H 0.29 15.49 8.31 -92.71 -0.77 14.71 16 29 H 0.15 4.03 7.60 -2.91 -0.02 4.01 16 30 H 0.18 2.10 8.03 -2.91 -0.02 2.08 16 31 H 0.26 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.25 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -76.78 295.01 7.82 -68.96 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 1.16 Total: 9.59 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 7.55 Total: 3.54 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -3.25 Total: -81.33 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: 0.39 Total: -43.85 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.96 Total: 43.09 kcal Total: -76.78 7.82 -68.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745410501.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.362 kcal (2) G-P(sol) polarization free energy of solvation -76.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds