Wall clock time and date at job start Mon Mar 30 2020 01:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38973 * 124.28884 * 2 1 4 4 C 1.39033 * 131.65437 * 0.02562 * 3 2 1 5 5 C 1.38054 * 120.14256 * 180.02562 * 4 3 2 6 6 C 1.38567 * 120.65492 * 359.95971 * 5 4 3 7 7 C 1.37975 * 120.09535 * 0.02562 * 6 5 4 8 8 C 1.39248 * 119.71571 * 359.71615 * 7 6 5 9 9 C 1.47872 * 133.23542 * 179.53759 * 8 7 6 10 10 N 1.31441 * 127.50717 * 0.77591 * 9 8 7 11 11 N 1.28996 * 120.00320 * 6.46007 * 10 9 8 12 12 C 1.34775 * 120.00175 * 185.83696 * 11 10 9 13 13 O 1.21800 * 119.99887 * 0.02562 * 12 11 10 14 14 C 1.41399 * 119.99898 * 180.02562 * 12 11 10 15 15 H 1.07996 * 119.99856 * 350.84370 * 14 12 11 16 16 C 1.40259 * 119.99691 * 170.84755 * 14 12 11 17 17 N 1.30575 * 119.99403 * 165.83353 * 16 14 12 18 18 Si 1.86798 * 120.00357 * 345.83661 * 16 14 12 19 19 H 1.48498 * 109.47255 * 89.99657 * 18 16 14 20 20 H 1.48499 * 109.47054 * 210.00254 * 18 16 14 21 21 H 1.48504 * 109.46948 * 329.99670 * 18 16 14 22 22 C 1.34394 * 124.29206 * 180.02562 * 2 1 3 23 23 O 1.21653 * 126.05668 * 359.93568 * 22 2 1 24 24 H 1.09008 * 109.47004 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47047 * 299.99821 * 1 2 3 26 26 H 1.08995 * 109.47811 * 60.00106 * 1 2 3 27 27 H 1.08001 * 119.92762 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.67286 * 179.97438 * 5 4 3 29 29 H 1.07999 * 119.95183 * 180.02562 * 6 5 4 30 30 H 1.07995 * 120.13779 * 180.02562 * 7 6 5 31 31 H 0.97007 * 119.99563 * 5.84215 * 11 10 9 32 32 H 0.96998 * 120.00835 * 5.26237 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2479 1.1482 0.0000 4 6 1.9102 2.4969 0.0005 5 6 2.9000 3.4594 -0.0002 6 6 4.2375 3.0973 -0.0005 7 6 4.5934 1.7643 -0.0006 8 6 3.6031 0.7854 0.0055 9 6 3.6399 -0.6928 -0.0016 10 7 4.7022 -1.4669 -0.0023 11 7 5.8769 -0.9503 0.1293 12 6 6.9718 -1.7272 0.0110 13 8 6.8523 -2.9170 -0.2206 14 6 8.2594 -1.1609 0.1558 15 1 8.3744 -0.0886 0.2131 16 6 9.3872 -1.9920 0.2249 17 7 10.5816 -1.4847 0.0802 18 14 9.1804 -3.8242 0.5238 19 1 9.0504 -4.5266 -0.7780 20 1 10.3665 -4.3441 1.2506 21 1 7.9599 -4.0585 1.3368 22 6 2.2222 -1.1103 -0.0005 23 8 1.8131 -2.2560 0.0001 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.8714 2.7923 0.0013 28 1 2.6291 4.5048 -0.0002 29 1 5.0025 3.8597 -0.0006 30 1 5.6357 1.4813 -0.0005 31 1 5.9721 -0.0026 0.3134 32 1 10.6947 -0.5246 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012416825.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:27 Heat of formation + Delta-G solvation = 6.826979 kcal Electronic energy + Delta-G solvation = -20059.823298 eV Core-core repulsion = 16793.583610 eV Total energy + Delta-G solvation = -3266.239688 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.50290 -39.50307 -38.22895 -36.46654 -35.73494 -33.39780 -32.49851 -30.58596 -29.90456 -27.82870 -26.87275 -24.41344 -22.47031 -21.86361 -20.62679 -20.22080 -18.54752 -17.68424 -16.95539 -16.17550 -16.04542 -15.91196 -15.36695 -14.65269 -14.26674 -14.15864 -13.95909 -13.60122 -13.52551 -13.23725 -12.88311 -12.60710 -12.52211 -12.22026 -11.94093 -11.50892 -10.87874 -10.47282 -10.44567 -10.27830 -9.75487 -9.61419 -9.43081 -9.24667 -8.40945 -8.22008 -7.60389 -7.51048 -5.52417 0.67966 1.20449 1.93078 2.56944 3.21566 3.34423 3.45118 3.54929 3.74286 3.87757 4.05423 4.25536 4.29606 4.65532 4.76472 4.86958 5.08138 5.09814 5.12588 5.16639 5.21875 5.46551 5.51540 5.60912 5.78226 6.05957 6.27409 6.39086 6.56448 6.69083 6.95211 7.03568 7.21748 7.47565 8.02524 8.11100 8.25797 8.50237 9.63625 9.82618 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.024437 B = 0.005280 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.550692 B = 5302.246065 C = 6413.026805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.549 5.549 3 C 0.152 3.848 4 C -0.134 4.134 5 C -0.092 4.092 6 C -0.134 4.134 7 C -0.081 4.081 8 C -0.111 4.111 9 C -0.081 4.081 10 N -0.065 5.065 11 N -0.490 5.490 12 C 0.531 3.469 13 O -0.570 6.570 14 C -0.572 4.572 15 H 0.081 0.919 16 C 0.070 3.930 17 N -0.791 5.791 18 Si 1.115 2.885 19 H -0.279 1.279 20 H -0.311 1.311 21 H -0.271 1.271 22 C 0.594 3.406 23 O -0.498 6.498 24 H 0.092 0.908 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.379 0.621 32 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.174 12.745 0.935 19.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.271 5.271 3 C 0.052 3.948 4 C -0.155 4.155 5 C -0.111 4.111 6 C -0.153 4.153 7 C -0.102 4.102 8 C -0.117 4.117 9 C -0.258 4.258 10 N 0.103 4.897 11 N -0.240 5.240 12 C 0.347 3.653 13 O -0.459 6.459 14 C -0.607 4.607 15 H 0.099 0.901 16 C -0.153 4.153 17 N -0.416 5.416 18 Si 0.944 3.056 19 H -0.205 1.205 20 H -0.241 1.241 21 H -0.197 1.197 22 C 0.383 3.617 23 O -0.370 6.370 24 H 0.110 0.890 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.140 0.860 31 H 0.221 0.779 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.350 8.939 0.805 16.086 hybrid contribution -0.929 3.251 -0.072 3.382 sum -14.279 12.190 0.733 18.789 Atomic orbital electron populations 1.21790 0.76831 1.04739 1.02348 1.45073 1.06897 1.05148 1.69960 1.18169 0.89371 0.87909 0.99337 1.20208 1.00066 0.88953 1.06297 1.20881 0.92259 0.98842 0.99152 1.20950 0.96447 0.95255 1.02630 1.20653 0.97631 0.92266 0.99622 1.19509 0.93470 0.92844 1.05916 1.22246 0.93329 0.88920 1.21341 1.71512 0.91583 1.29874 0.96696 1.45795 1.02569 1.13053 1.62546 1.17341 0.82207 0.85819 0.79907 1.90343 1.84110 1.15678 1.55729 1.21207 0.90612 0.97052 1.51816 0.90121 1.27443 0.90245 1.09600 0.88059 1.70568 1.24262 1.16853 1.29925 0.82654 0.73673 0.70526 0.78777 1.20504 1.24114 1.19700 1.17410 0.84867 0.83560 0.75825 1.90838 1.78687 1.18539 1.48902 0.88973 0.91180 0.91161 0.85672 0.85302 0.85260 0.86000 0.77911 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.93 59.85 0.65 1.48 16 2 N -0.55 -7.95 3.13 -121.79 -0.38 -8.33 16 3 C 0.15 2.10 6.74 -83.56 -0.56 1.54 16 4 C -0.13 -1.40 9.88 -39.35 -0.39 -1.79 16 5 C -0.09 -0.87 10.01 -39.53 -0.40 -1.27 16 6 C -0.13 -1.45 10.04 -39.56 -0.40 -1.85 16 7 C -0.08 -1.13 9.38 -39.30 -0.37 -1.50 16 8 C -0.11 -1.80 6.12 -104.81 -0.64 -2.45 16 9 C -0.08 -1.61 7.51 -80.19 -0.60 -2.21 16 10 N -0.07 -1.51 10.67 34.76 0.37 -1.14 16 11 N -0.49 -11.11 5.84 29.05 0.17 -10.94 16 12 C 0.53 13.97 7.37 -15.06 -0.11 13.86 16 13 O -0.57 -16.66 12.49 5.10 0.06 -16.60 16 14 C -0.57 -14.78 9.68 -37.62 -0.36 -15.15 16 15 H 0.08 1.95 8.06 -52.49 -0.42 1.53 16 16 C 0.07 1.85 5.52 -17.33 -0.10 1.76 16 17 N -0.79 -20.57 13.64 55.56 0.76 -19.81 16 18 Si 1.12 27.58 26.31 -169.99 -4.47 23.10 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 20 H -0.31 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.27 -7.03 6.56 56.52 0.37 -6.66 16 22 C 0.59 11.25 8.07 -12.52 -0.10 11.15 16 23 O -0.50 -10.76 17.46 5.23 0.09 -10.67 16 24 H 0.09 0.94 7.58 -51.92 -0.39 0.55 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 28 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 29 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.12 1.70 5.70 -52.49 -0.30 1.40 16 31 H 0.38 7.28 4.78 -190.11 -0.91 6.37 16 32 H 0.29 7.01 8.72 -40.82 -0.36 6.65 16 LS Contribution 286.87 15.07 4.32 4.32 Total: -1.00 -32.50 286.87 -5.77 -38.27 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -3.32 Total: -1.77 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -3.37 Total: 3.57 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.92 Total: -40.23 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: 0.16 Total: -27.27 kcal Atomic # 14 Polarization: 27.58 SS G_CDS: -4.47 Total: 23.10 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.50 -5.77 -38.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012416825.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.099 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds