Wall clock time and date at job start Mon Mar 30 2020 01:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38973 * 124.28884 * 2 1 4 4 C 1.39033 * 131.65437 * 0.02562 * 3 2 1 5 5 C 1.38054 * 120.14256 * 180.02562 * 4 3 2 6 6 C 1.38567 * 120.65492 * 359.95971 * 5 4 3 7 7 C 1.37975 * 120.09535 * 0.02562 * 6 5 4 8 8 C 1.39248 * 119.71571 * 359.71615 * 7 6 5 9 9 C 1.47872 * 133.23542 * 179.53759 * 8 7 6 10 10 N 1.31441 * 127.50717 * 0.77591 * 9 8 7 11 11 N 1.28996 * 120.00320 * 6.46007 * 10 9 8 12 12 C 1.34775 * 120.00175 * 185.83696 * 11 10 9 13 13 O 1.21800 * 119.99887 * 0.02562 * 12 11 10 14 14 C 1.41399 * 119.99898 * 180.02562 * 12 11 10 15 15 H 1.07996 * 119.99856 * 350.84370 * 14 12 11 16 16 C 1.40259 * 119.99691 * 170.84755 * 14 12 11 17 17 N 1.30575 * 119.99403 * 165.83353 * 16 14 12 18 18 Si 1.86798 * 120.00357 * 345.83661 * 16 14 12 19 19 H 1.48498 * 109.47255 * 89.99657 * 18 16 14 20 20 H 1.48499 * 109.47054 * 210.00254 * 18 16 14 21 21 H 1.48504 * 109.46948 * 329.99670 * 18 16 14 22 22 C 1.34394 * 124.29206 * 180.02562 * 2 1 3 23 23 O 1.21653 * 126.05668 * 359.93568 * 22 2 1 24 24 H 1.09008 * 109.47004 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47047 * 299.99821 * 1 2 3 26 26 H 1.08995 * 109.47811 * 60.00106 * 1 2 3 27 27 H 1.08001 * 119.92762 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.67286 * 179.97438 * 5 4 3 29 29 H 1.07999 * 119.95183 * 180.02562 * 6 5 4 30 30 H 1.07995 * 120.13779 * 180.02562 * 7 6 5 31 31 H 0.97007 * 119.99563 * 5.84215 * 11 10 9 32 32 H 0.96998 * 120.00835 * 5.26237 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2479 1.1482 0.0000 4 6 1.9102 2.4969 0.0005 5 6 2.9000 3.4594 -0.0002 6 6 4.2375 3.0973 -0.0005 7 6 4.5934 1.7643 -0.0006 8 6 3.6031 0.7854 0.0055 9 6 3.6399 -0.6928 -0.0016 10 7 4.7022 -1.4669 -0.0023 11 7 5.8769 -0.9503 0.1293 12 6 6.9718 -1.7272 0.0110 13 8 6.8523 -2.9170 -0.2206 14 6 8.2594 -1.1609 0.1558 15 1 8.3744 -0.0886 0.2131 16 6 9.3872 -1.9920 0.2249 17 7 10.5816 -1.4847 0.0802 18 14 9.1804 -3.8242 0.5238 19 1 9.0504 -4.5266 -0.7780 20 1 10.3665 -4.3441 1.2506 21 1 7.9599 -4.0585 1.3368 22 6 2.2222 -1.1103 -0.0005 23 8 1.8131 -2.2560 0.0001 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.8714 2.7923 0.0013 28 1 2.6291 4.5048 -0.0002 29 1 5.0025 3.8597 -0.0006 30 1 5.6357 1.4813 -0.0005 31 1 5.9721 -0.0026 0.3134 32 1 10.6947 -0.5246 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012416825.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:27 Heat of formation + Delta-G solvation = -16.957347 kcal Electronic energy + Delta-G solvation = -20060.854663 eV Core-core repulsion = 16793.583610 eV Total energy + Delta-G solvation = -3267.271054 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.090 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.77240 -41.21910 -39.46838 -38.30079 -36.96273 -35.42081 -33.86675 -31.75820 -31.15273 -29.16216 -28.40714 -25.72168 -23.59264 -23.19862 -22.16386 -21.72838 -20.33403 -19.06961 -18.21201 -17.73489 -17.38639 -17.31150 -16.61334 -16.37240 -16.02298 -15.51091 -15.23589 -15.05019 -14.87612 -14.47423 -14.40570 -14.11287 -13.55066 -13.40749 -13.12004 -12.88880 -12.54658 -12.31577 -11.89069 -11.63377 -11.45797 -11.33478 -11.06493 -10.67870 -10.41255 -9.57364 -9.44273 -8.90336 -7.54676 -0.68685 0.23621 0.73789 1.28017 1.29762 1.48728 1.77741 1.86007 1.98548 2.15515 2.35809 2.77352 3.02844 3.06786 3.51845 3.63689 3.92783 4.02999 4.23129 4.32484 4.51147 4.51895 4.61968 4.75752 4.81631 4.99272 5.08114 5.22220 5.35793 5.47115 5.53207 5.54661 5.60477 5.99357 6.22928 6.23894 6.67807 6.83591 7.75361 7.81793 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.024437 B = 0.005280 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.550692 B = 5302.246065 C = 6413.026805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.537 5.537 3 C 0.144 3.856 4 C -0.118 4.118 5 C -0.067 4.067 6 C -0.129 4.129 7 C -0.090 4.090 8 C -0.159 4.159 9 C -0.054 4.054 10 N -0.139 5.139 11 N -0.501 5.501 12 C 0.530 3.470 13 O -0.612 6.612 14 C -0.584 4.584 15 H 0.092 0.908 16 C 0.048 3.952 17 N -0.798 5.798 18 Si 1.140 2.860 19 H -0.289 1.289 20 H -0.285 1.285 21 H -0.297 1.297 22 C 0.582 3.418 23 O -0.536 6.536 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.168 0.832 28 H 0.178 0.822 29 H 0.159 0.841 30 H 0.111 0.889 31 H 0.392 0.608 32 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.555 16.974 1.061 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.259 5.259 3 C 0.045 3.955 4 C -0.138 4.138 5 C -0.087 4.087 6 C -0.147 4.147 7 C -0.112 4.112 8 C -0.165 4.165 9 C -0.236 4.236 10 N 0.035 4.965 11 N -0.249 5.249 12 C 0.347 3.653 13 O -0.503 6.503 14 C -0.619 4.619 15 H 0.110 0.890 16 C -0.174 4.174 17 N -0.423 5.423 18 Si 0.969 3.031 19 H -0.216 1.216 20 H -0.214 1.214 21 H -0.225 1.225 22 C 0.370 3.630 23 O -0.410 6.410 24 H 0.100 0.900 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.186 0.814 28 H 0.195 0.805 29 H 0.177 0.823 30 H 0.128 0.872 31 H 0.236 0.764 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.711 13.242 0.941 20.568 hybrid contribution -0.525 2.277 -0.134 2.340 sum -16.236 15.519 0.807 22.474 Atomic orbital electron populations 1.22204 0.73642 1.05167 1.05392 1.45095 1.08529 1.03929 1.68318 1.18496 0.87977 0.89067 0.99912 1.20755 1.02644 0.86852 1.03590 1.21518 0.91027 1.01007 0.95110 1.21382 0.98431 0.94080 1.00828 1.20785 0.96829 0.93563 0.99988 1.19532 0.95787 0.90861 1.10313 1.22981 0.93207 0.91630 1.15736 1.71454 0.92279 1.31710 1.01089 1.44995 1.01908 1.13123 1.64921 1.17390 0.83360 0.85461 0.79131 1.90295 1.85226 1.17358 1.57458 1.21309 0.90647 0.97609 1.52290 0.89017 1.27813 0.90572 1.10769 0.88249 1.70547 1.24039 1.17422 1.30275 0.82313 0.73273 0.69575 0.77929 1.21627 1.21362 1.22482 1.17583 0.85128 0.84235 0.76044 1.90801 1.79251 1.20288 1.50704 0.90042 0.88015 0.88057 0.81429 0.80499 0.82343 0.87166 0.76409 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.93 127.77 1.40 2.60 16 2 N -0.54 -14.49 3.13 -657.68 -2.06 -16.55 16 3 C 0.14 3.53 6.74 38.70 0.26 3.79 16 4 C -0.12 -1.72 9.88 22.42 0.22 -1.50 16 5 C -0.07 -0.82 10.01 22.30 0.22 -0.60 16 6 C -0.13 -2.20 10.04 22.29 0.22 -1.98 16 7 C -0.09 -2.39 9.38 22.45 0.21 -2.18 16 8 C -0.16 -5.03 6.12 -19.98 -0.12 -5.15 16 9 C -0.05 -2.22 7.51 44.28 0.33 -1.89 16 10 N -0.14 -6.88 10.67 -43.94 -0.47 -7.35 16 11 N -0.50 -24.07 5.84 -180.17 -1.05 -25.13 16 12 C 0.53 29.42 7.37 85.02 0.63 30.05 16 13 O -0.61 -37.86 12.49 -4.67 -0.06 -37.92 16 14 C -0.58 -31.16 9.68 23.54 0.23 -30.93 16 15 H 0.09 4.54 8.06 -2.91 -0.02 4.52 16 16 C 0.05 2.60 5.52 85.37 0.47 3.07 16 17 N -0.80 -41.58 13.64 21.87 0.30 -41.28 16 18 Si 1.14 57.72 26.31 68.60 1.80 59.52 16 19 H -0.29 -14.97 7.11 99.48 0.71 -14.27 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 21 H -0.30 -16.23 6.56 99.48 0.65 -15.57 16 22 C 0.58 22.46 8.07 86.83 0.70 23.16 16 23 O -0.54 -24.10 17.46 -4.20 -0.07 -24.17 16 24 H 0.08 1.53 7.58 -2.38 -0.02 1.51 16 25 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 28 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 29 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 30 H 0.11 3.10 5.70 -2.91 -0.02 3.08 16 31 H 0.39 15.90 4.78 -219.71 -1.05 14.85 16 32 H 0.29 14.31 8.72 -92.71 -0.81 13.50 16 Total: -1.00 -76.72 286.87 3.21 -73.51 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: 0.04 Total: 0.92 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 4.77 Total: 18.44 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -3.28 Total: -90.31 kcal Atomic # 8 Polarization: -61.96 SS G_CDS: -0.13 Total: -62.09 kcal Atomic # 14 Polarization: 57.72 SS G_CDS: 1.80 Total: 59.52 kcal Total: -76.72 3.21 -73.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012416825.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.557 kcal (2) G-P(sol) polarization free energy of solvation -76.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds