Wall clock time and date at job start Mon Mar 30 2020 01:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46922 * 2 1 4 4 C 1.36934 * 119.99712 * 293.50829 * 3 2 1 5 5 H 1.08007 * 119.99618 * 149.22483 * 4 3 2 6 6 C 1.38809 * 120.00583 * 329.22561 * 4 3 2 7 7 N 1.31622 * 119.99813 * 337.61147 * 6 4 3 8 8 Si 1.86803 * 120.00034 * 157.60702 * 6 4 3 9 9 H 1.48498 * 109.46880 * 90.00164 * 8 6 4 10 10 H 1.48499 * 109.46831 * 210.00077 * 8 6 4 11 11 H 1.48495 * 109.47255 * 330.00150 * 8 6 4 12 12 S 1.65593 * 119.99855 * 113.79017 * 3 2 1 13 13 O 1.42098 * 106.40226 * 203.53564 * 12 3 2 14 14 O 1.42102 * 106.40428 * 336.45831 * 12 3 2 15 15 C 1.76202 * 107.21968 * 89.99610 * 12 3 2 16 16 C 1.39871 * 126.03827 * 90.02502 * 15 12 3 17 17 C 1.50699 * 125.89965 * 359.97438 * 16 15 12 18 18 N 1.30840 * 108.20297 * 179.97438 * 16 15 12 19 19 N 1.40085 * 108.20355 * 359.97438 * 18 16 15 20 20 H 0.96999 * 126.03543 * 179.97438 * 19 18 16 21 21 C 1.34946 * 107.92559 * 359.75932 * 19 18 16 22 22 C 1.50701 * 126.12516 * 180.23755 * 21 19 18 23 23 H 1.08998 * 109.46853 * 60.00351 * 1 2 3 24 24 H 1.08998 * 109.47092 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47126 * 300.00280 * 1 2 3 26 26 H 1.08997 * 109.47126 * 239.99720 * 2 1 3 27 27 H 1.08998 * 109.46853 * 119.99648 * 2 1 3 28 28 H 0.97000 * 119.99500 * 179.97438 * 7 6 4 29 29 H 1.09011 * 109.47035 * 90.00294 * 17 16 15 30 30 H 1.08995 * 109.47457 * 210.00152 * 17 16 15 31 31 H 1.09002 * 109.47326 * 330.00833 * 17 16 15 32 32 H 1.08996 * 109.47011 * 270.17680 * 22 21 19 33 33 H 1.08994 * 109.47305 * 30.17604 * 22 21 19 34 34 H 1.09002 * 109.46836 * 150.17684 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.8005 2.1844 -1.0875 5 1 1.6839 3.2502 -0.9570 6 6 1.7295 1.6289 -2.3576 7 7 2.2868 0.4608 -2.5970 8 14 0.8431 2.5392 -3.7270 9 1 1.8033 3.4217 -4.4371 10 1 0.2713 1.5582 -4.6840 11 1 -0.2499 3.3611 -3.1483 12 16 2.8397 1.9691 1.3122 13 8 2.6922 3.3820 1.2780 14 8 2.4459 1.1731 2.4216 15 6 4.5504 1.6408 1.0467 16 6 5.4609 2.4872 0.4057 17 6 5.1485 3.8404 -0.1793 18 7 6.6307 1.9012 0.4017 19 7 6.5015 0.6618 1.0416 20 1 7.2108 0.0152 1.1816 21 6 5.2169 0.5284 1.4330 22 6 4.6291 -0.6503 2.1653 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.2368 0.0724 -3.4845 29 1 5.2973 4.6079 0.5804 30 1 5.8098 4.0325 -1.0242 31 1 4.1123 3.8598 -0.5172 32 1 4.2627 -1.3804 1.4436 33 1 5.3958 -1.1095 2.7893 34 1 3.8037 -0.3135 2.7925 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049859.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:07 Heat of formation + Delta-G solvation = -5.808226 kcal Electronic energy + Delta-G solvation = -20544.607332 eV Core-core repulsion = 17413.263691 eV Total energy + Delta-G solvation = -3131.343640 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.68256 -36.02775 -35.86445 -34.37037 -32.83985 -31.72049 -31.16356 -29.17890 -27.44710 -26.57272 -24.81525 -21.49838 -20.85307 -19.55748 -18.32025 -17.27569 -16.72130 -16.28544 -15.14899 -14.76580 -14.52995 -14.25349 -13.58873 -13.29454 -12.92484 -12.83595 -12.73265 -12.24498 -12.02658 -11.96158 -11.89883 -11.49522 -11.20390 -10.93831 -10.88612 -10.70612 -10.63752 -10.46114 -10.37129 -10.12533 -9.77706 -9.63611 -9.26228 -8.79689 -8.43027 -7.79617 -6.41725 -4.02315 1.90634 2.21697 3.00809 3.13564 3.20819 3.25947 3.29465 4.08001 4.62270 4.84432 4.98324 5.12266 5.27896 5.36582 5.64645 5.78930 5.95466 6.14357 6.27472 6.29348 6.33433 6.44158 6.46073 6.54704 6.72284 6.73781 7.01855 7.15224 7.29625 7.39111 7.65107 7.67987 8.07633 8.38712 8.82264 9.27324 10.49645 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.019162 B = 0.009391 C = 0.008179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.855131 B = 2980.742690 C = 3422.418301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.111 3.889 3 N -0.808 5.808 4 C -0.254 4.254 5 H 0.109 0.891 6 C 0.040 3.960 7 N -0.834 5.834 8 Si 0.915 3.085 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.264 1.264 12 S 2.586 3.414 13 O -0.984 6.984 14 O -1.009 7.009 15 C -0.787 4.787 16 C 0.167 3.833 17 C -0.084 4.084 18 N -0.316 5.316 19 N -0.480 5.480 20 H 0.430 0.570 21 C 0.188 3.812 22 C -0.128 4.128 23 H 0.060 0.940 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.104 0.896 27 H 0.054 0.946 28 H 0.271 0.729 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.319 -2.979 2.720 4.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.015 4.015 3 N -0.633 5.633 4 C -0.400 4.400 5 H 0.126 0.874 6 C -0.172 4.172 7 N -0.473 5.473 8 Si 0.740 3.260 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.188 1.188 12 S 2.685 3.315 13 O -0.974 6.974 14 O -0.999 6.999 15 C -0.878 4.878 16 C -0.002 4.002 17 C -0.143 4.143 18 N -0.139 5.139 19 N -0.185 5.185 20 H 0.273 0.727 21 C 0.056 3.944 22 C -0.186 4.186 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.121 0.879 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.403 -2.610 3.196 5.348 hybrid contribution 0.191 -0.519 -0.824 0.993 sum 3.594 -3.129 2.372 5.323 Atomic orbital electron populations 1.21890 0.97225 0.99618 1.01761 1.21393 0.93717 0.83593 1.02824 1.53619 1.55705 1.20102 1.33906 1.19638 1.42614 0.93151 0.84574 0.87371 1.25626 0.96619 0.96563 0.98398 1.69915 1.37593 1.17418 1.22343 0.86104 0.80209 0.79438 0.80206 1.19949 1.20651 1.18806 1.08604 0.72410 0.74235 0.76284 1.93339 1.85851 1.30684 1.87510 1.93253 1.82118 1.70620 1.53919 1.32476 1.29952 1.03165 1.22225 1.21799 0.89079 0.96074 0.93243 1.20446 1.04532 0.89228 1.00070 1.77156 1.22553 0.93697 1.20465 1.46574 1.08680 1.16714 1.46551 0.72722 1.20863 0.84692 0.95693 0.93189 1.21087 1.02923 0.93961 1.00644 0.92116 0.93750 0.93818 0.87904 0.92756 0.91893 0.90373 0.91368 0.87924 0.89328 0.91209 0.85746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.96 37.16 0.37 -2.45 16 2 C 0.11 2.39 5.84 -4.04 -0.02 2.36 16 3 N -0.81 -18.94 2.98 -59.91 -0.18 -19.11 16 4 C -0.25 -6.17 8.67 -15.06 -0.13 -6.30 16 5 H 0.11 2.63 7.35 -52.48 -0.39 2.25 16 6 C 0.04 0.94 4.66 -17.43 -0.08 0.86 16 7 N -0.83 -20.11 11.06 55.49 0.61 -19.50 16 8 Si 0.91 18.52 29.61 -169.99 -5.03 13.49 16 9 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 10 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 11 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 12 S 2.59 60.19 5.60 -107.50 -0.60 59.59 16 13 O -0.98 -24.66 14.77 -57.17 -0.84 -25.50 16 14 O -1.01 -23.59 13.88 -57.17 -0.79 -24.39 16 15 C -0.79 -17.32 6.17 -40.01 -0.25 -17.57 16 16 C 0.17 3.62 7.21 -82.40 -0.59 3.03 16 17 C -0.08 -1.65 9.53 36.00 0.34 -1.30 16 18 N -0.32 -6.51 12.70 33.67 0.43 -6.09 16 19 N -0.48 -8.47 7.36 33.48 0.25 -8.22 16 20 H 0.43 5.66 8.96 -182.61 -1.64 4.02 16 21 C 0.19 3.58 7.20 -82.26 -0.59 2.99 16 22 C -0.13 -1.96 10.10 36.01 0.36 -1.60 16 23 H 0.06 1.22 7.44 -51.93 -0.39 0.84 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.10 2.34 5.52 -51.93 -0.29 2.05 16 27 H 0.05 1.08 7.03 -51.93 -0.37 0.72 16 28 H 0.27 6.18 8.31 -40.82 -0.34 5.84 16 29 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.10 2.15 6.88 -51.93 -0.36 1.80 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.12 2.13 5.54 -51.93 -0.29 1.84 16 LS Contribution 294.52 15.07 4.44 4.44 Total: -1.00 -29.86 294.52 -7.69 -37.55 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.38 Total: 7.71 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -0.59 Total: -19.98 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 1.11 Total: -52.92 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -1.64 Total: -49.89 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Atomic # 16 Polarization: 60.19 SS G_CDS: -0.60 Total: 59.59 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.86 -7.69 -37.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049859.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.744 kcal (2) G-P(sol) polarization free energy of solvation -29.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds