Wall clock time and date at job start Mon Mar 30 2020 01:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46922 * 2 1 4 4 C 1.36934 * 119.99712 * 293.50829 * 3 2 1 5 5 H 1.08007 * 119.99618 * 149.22483 * 4 3 2 6 6 C 1.38809 * 120.00583 * 329.22561 * 4 3 2 7 7 N 1.31622 * 119.99813 * 337.61147 * 6 4 3 8 8 Si 1.86803 * 120.00034 * 157.60702 * 6 4 3 9 9 H 1.48498 * 109.46880 * 90.00164 * 8 6 4 10 10 H 1.48499 * 109.46831 * 210.00077 * 8 6 4 11 11 H 1.48495 * 109.47255 * 330.00150 * 8 6 4 12 12 S 1.65593 * 119.99855 * 113.79017 * 3 2 1 13 13 O 1.42098 * 106.40226 * 203.53564 * 12 3 2 14 14 O 1.42102 * 106.40428 * 336.45831 * 12 3 2 15 15 C 1.76202 * 107.21968 * 89.99610 * 12 3 2 16 16 C 1.39871 * 126.03827 * 90.02502 * 15 12 3 17 17 C 1.50699 * 125.89965 * 359.97438 * 16 15 12 18 18 N 1.30840 * 108.20297 * 179.97438 * 16 15 12 19 19 N 1.40085 * 108.20355 * 359.97438 * 18 16 15 20 20 H 0.96999 * 126.03543 * 179.97438 * 19 18 16 21 21 C 1.34946 * 107.92559 * 359.75932 * 19 18 16 22 22 C 1.50701 * 126.12516 * 180.23755 * 21 19 18 23 23 H 1.08998 * 109.46853 * 60.00351 * 1 2 3 24 24 H 1.08998 * 109.47092 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47126 * 300.00280 * 1 2 3 26 26 H 1.08997 * 109.47126 * 239.99720 * 2 1 3 27 27 H 1.08998 * 109.46853 * 119.99648 * 2 1 3 28 28 H 0.97000 * 119.99500 * 179.97438 * 7 6 4 29 29 H 1.09011 * 109.47035 * 90.00294 * 17 16 15 30 30 H 1.08995 * 109.47457 * 210.00152 * 17 16 15 31 31 H 1.09002 * 109.47326 * 330.00833 * 17 16 15 32 32 H 1.08996 * 109.47011 * 270.17680 * 22 21 19 33 33 H 1.08994 * 109.47305 * 30.17604 * 22 21 19 34 34 H 1.09002 * 109.46836 * 150.17684 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.8005 2.1844 -1.0875 5 1 1.6839 3.2502 -0.9570 6 6 1.7295 1.6289 -2.3576 7 7 2.2868 0.4608 -2.5970 8 14 0.8431 2.5392 -3.7270 9 1 1.8033 3.4217 -4.4371 10 1 0.2713 1.5582 -4.6840 11 1 -0.2499 3.3611 -3.1483 12 16 2.8397 1.9691 1.3122 13 8 2.6922 3.3820 1.2780 14 8 2.4459 1.1731 2.4216 15 6 4.5504 1.6408 1.0467 16 6 5.4609 2.4872 0.4057 17 6 5.1485 3.8404 -0.1793 18 7 6.6307 1.9012 0.4017 19 7 6.5015 0.6618 1.0416 20 1 7.2108 0.0152 1.1816 21 6 5.2169 0.5284 1.4330 22 6 4.6291 -0.6503 2.1653 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.2368 0.0724 -3.4845 29 1 5.2973 4.6079 0.5804 30 1 5.8098 4.0325 -1.0242 31 1 4.1123 3.8598 -0.5172 32 1 4.2627 -1.3804 1.4436 33 1 5.3958 -1.1095 2.7893 34 1 3.8037 -0.3135 2.7925 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049859.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:06 Heat of formation + Delta-G solvation = -26.807266 kcal Electronic energy + Delta-G solvation = -20545.517918 eV Core-core repulsion = 17413.263691 eV Total energy + Delta-G solvation = -3132.254227 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.22253 -37.80113 -37.69097 -36.26476 -34.35586 -33.48810 -32.63961 -30.85089 -28.98502 -27.99811 -26.59371 -23.18178 -22.44319 -21.12581 -20.09568 -18.88766 -18.47420 -18.03673 -16.87503 -16.41693 -16.12395 -16.00854 -15.22652 -14.88447 -14.53772 -14.24846 -14.19054 -13.90804 -13.63383 -13.48206 -13.30837 -13.04343 -12.90948 -12.64503 -12.52833 -12.50535 -12.44226 -12.07637 -12.01717 -11.83981 -11.47134 -11.33836 -11.01755 -10.32551 -10.02827 -9.56622 -8.18293 -5.86562 0.14477 0.68491 1.35083 1.52211 1.56223 1.68065 1.87881 2.39799 2.86991 3.04979 3.39251 3.58368 3.65326 3.97526 4.15438 4.43670 4.51369 4.64478 4.76318 4.78895 4.82617 4.86566 4.90835 5.10299 5.16072 5.22102 5.39019 5.52042 5.56181 5.73813 5.94708 6.31565 6.54481 6.58923 7.02524 7.47605 8.73260 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.019162 B = 0.009391 C = 0.008179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.855131 B = 2980.742690 C = 3422.418301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.106 3.894 3 N -0.819 5.819 4 C -0.280 4.280 5 H 0.096 0.904 6 C 0.015 3.985 7 N -0.856 5.856 8 Si 0.966 3.034 9 H -0.274 1.274 10 H -0.275 1.275 11 H -0.263 1.263 12 S 2.604 3.396 13 O -1.008 7.008 14 O -1.014 7.014 15 C -0.826 4.826 16 C 0.148 3.852 17 C -0.086 4.086 18 N -0.328 5.328 19 N -0.462 5.462 20 H 0.451 0.549 21 C 0.200 3.800 22 C -0.129 4.129 23 H 0.047 0.953 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.273 0.727 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 -4.144 2.939 5.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 N -0.645 5.645 4 C -0.423 4.423 5 H 0.114 0.886 6 C -0.195 4.195 7 N -0.495 5.495 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.200 1.200 11 H -0.187 1.187 12 S 2.705 3.295 13 O -0.999 6.999 14 O -1.004 7.004 15 C -0.920 4.920 16 C -0.021 4.021 17 C -0.144 4.144 18 N -0.151 5.151 19 N -0.169 5.169 20 H 0.298 0.702 21 C 0.065 3.935 22 C -0.187 4.187 23 H 0.066 0.934 24 H 0.092 0.908 25 H 0.061 0.939 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.964 -3.785 3.398 6.448 hybrid contribution 0.132 -0.222 -0.768 0.810 sum 4.095 -4.007 2.630 6.304 Atomic orbital electron populations 1.21860 0.95890 1.01360 1.01024 1.21501 0.94959 0.82742 1.02787 1.53546 1.56786 1.20718 1.33448 1.19610 1.44486 0.92895 0.85345 0.88615 1.26139 0.96689 0.97120 0.99587 1.69976 1.38359 1.18340 1.22836 0.85341 0.79201 0.78530 0.77990 1.19936 1.20013 1.18727 1.07380 0.72799 0.73495 0.75867 1.93306 1.86563 1.32167 1.87842 1.93251 1.82635 1.70520 1.53962 1.32258 1.29462 1.05315 1.24994 1.22098 0.89440 0.96861 0.93663 1.20474 1.03706 0.89133 1.01131 1.77080 1.22163 0.94797 1.21054 1.46532 1.09027 1.16216 1.45161 0.70162 1.21337 0.84748 0.95659 0.91778 1.21234 1.03651 0.92846 1.00986 0.93402 0.90769 0.93938 0.89064 0.91507 0.91668 0.89108 0.89521 0.89901 0.87866 0.86758 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.38 9.96 71.98 0.72 -4.66 16 2 C 0.11 4.50 5.84 86.38 0.50 5.00 16 3 N -0.82 -38.58 2.98 -343.44 -1.02 -39.60 16 4 C -0.28 -13.78 8.67 84.03 0.73 -13.05 16 5 H 0.10 4.83 7.35 -2.91 -0.02 4.81 16 6 C 0.01 0.68 4.66 84.86 0.40 1.08 16 7 N -0.86 -41.24 11.06 21.65 0.24 -41.00 16 8 Si 0.97 37.91 29.61 68.60 2.03 39.94 16 9 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 10 H -0.28 -10.45 7.11 99.48 0.71 -9.74 16 11 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 12 S 2.60 121.50 5.60 -56.49 -0.32 121.18 16 13 O -1.01 -51.49 14.77 -128.00 -1.89 -53.38 16 14 O -1.01 -46.78 13.88 -128.00 -1.78 -48.56 16 15 C -0.83 -35.81 6.17 21.99 0.14 -35.67 16 16 C 0.15 6.35 7.21 43.10 0.31 6.66 16 17 C -0.09 -3.37 9.53 71.24 0.68 -2.69 16 18 N -0.33 -13.03 12.70 -47.38 -0.60 -13.63 16 19 N -0.46 -15.14 7.36 -48.00 -0.35 -15.49 16 20 H 0.45 10.38 8.96 -213.33 -1.91 8.47 16 21 C 0.20 7.17 7.20 41.41 0.30 7.47 16 22 C -0.13 -3.56 10.10 71.24 0.72 -2.84 16 23 H 0.05 1.91 7.44 -2.39 -0.02 1.89 16 24 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.09 4.12 5.52 -2.39 -0.01 4.11 16 27 H 0.07 2.59 7.03 -2.39 -0.02 2.57 16 28 H 0.27 12.40 8.31 -92.71 -0.77 11.63 16 29 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 30 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.08 3.57 6.88 -2.39 -0.02 3.56 16 32 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.11 3.45 5.54 -2.39 -0.01 3.43 16 Total: -1.00 -63.31 294.52 0.02 -63.29 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: -0.78 Total: 25.96 kcal Atomic # 6 Polarization: -43.20 SS G_CDS: 4.49 Total: -38.71 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -1.74 Total: -109.72 kcal Atomic # 8 Polarization: -98.27 SS G_CDS: -3.67 Total: -101.94 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Atomic # 16 Polarization: 121.50 SS G_CDS: -0.32 Total: 121.18 kcal Total: -63.31 0.02 -63.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049859.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.481 kcal (2) G-P(sol) polarization free energy of solvation -63.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds