Wall clock time and date at job start Mon Mar 30 2020 01:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.46948 * 2 1 4 4 C 1.46496 * 120.00143 * 84.99730 * 3 2 1 5 5 C 1.50706 * 109.47106 * 84.99960 * 4 3 2 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00200 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00139 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47145 * 89.99836 * 9 7 5 11 11 H 1.48496 * 109.47547 * 210.00333 * 9 7 5 12 12 H 1.48499 * 109.47030 * 330.00237 * 9 7 5 13 13 S 1.65602 * 119.99575 * 265.00178 * 3 2 1 14 14 O 1.42094 * 106.40564 * 23.53691 * 13 3 2 15 15 O 1.42101 * 106.39758 * 156.46134 * 13 3 2 16 16 C 1.76201 * 107.21409 * 269.99554 * 13 3 2 17 17 C 1.39866 * 126.03701 * 90.03098 * 16 13 3 18 18 N 1.30841 * 108.20571 * 179.97438 * 17 16 13 19 19 N 1.40093 * 108.20092 * 0.02562 * 18 17 16 20 20 C 1.46493 * 126.03502 * 180.02562 * 19 18 17 21 21 C 1.34943 * 107.92321 * 359.75303 * 19 18 17 22 22 H 1.09008 * 109.47451 * 299.99920 * 1 2 3 23 23 H 1.08996 * 109.47456 * 60.00170 * 1 2 3 24 24 H 1.09004 * 109.47242 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47473 * 239.99986 * 2 1 3 26 26 H 1.09003 * 109.47077 * 119.99787 * 2 1 3 27 27 H 1.09001 * 109.47001 * 325.00251 * 4 3 2 28 28 H 1.09000 * 109.47574 * 205.00467 * 4 3 2 29 29 H 0.96999 * 120.00061 * 179.97438 * 8 7 5 30 30 H 1.08006 * 125.90286 * 359.97438 * 17 16 13 31 31 H 1.09005 * 109.47582 * 89.97045 * 20 19 18 32 32 H 1.08999 * 109.47396 * 209.97254 * 20 19 18 33 33 H 1.09000 * 109.47847 * 329.97298 * 20 19 18 34 34 H 1.08006 * 126.12495 * 180.24237 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1581 2.1088 1.2638 5 6 3.4947 1.7890 1.8823 6 1 4.1723 1.1119 1.3836 7 6 3.8524 2.3607 3.0848 8 7 5.0189 2.0820 3.6243 9 14 2.6807 3.5324 3.9472 10 1 1.7952 2.7649 4.8593 11 1 3.4599 4.5236 4.7318 12 1 1.8553 4.2404 2.9359 13 16 2.4120 2.1202 -1.4288 14 8 1.6868 1.4415 -2.4448 15 8 2.3055 3.5186 -1.1999 16 6 4.1169 1.7942 -1.7320 17 6 4.6330 0.7022 -2.4373 18 7 5.9373 0.8049 -2.4524 19 7 6.2929 1.9670 -1.7554 20 6 7.6558 2.4569 -1.5353 21 6 5.1578 2.5585 -1.3279 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.3616 1.8098 1.9452 28 1 2.0920 3.1804 1.0756 29 1 5.2707 2.4846 4.4701 30 1 4.0549 -0.0891 -2.8913 31 1 7.9411 3.1177 -2.3539 32 1 7.6972 3.0053 -0.5943 33 1 8.3434 1.6121 -1.4940 34 1 5.0921 3.4764 -0.7626 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050253772.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:40 Heat of formation + Delta-G solvation = 6.421841 kcal Electronic energy + Delta-G solvation = -19945.045083 eV Core-core repulsion = 16814.231778 eV Total energy + Delta-G solvation = -3130.813305 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.90951 -36.59434 -36.11853 -35.17029 -33.15491 -32.66161 -30.24472 -30.06534 -27.13510 -26.80713 -22.88902 -21.74288 -21.30520 -20.98011 -18.32689 -17.42307 -16.92557 -16.72179 -15.48389 -15.32458 -15.28525 -14.36332 -14.22229 -13.92955 -13.35912 -12.94308 -12.73535 -12.70037 -12.56298 -12.43458 -12.04832 -11.85346 -11.50340 -11.36145 -11.27415 -11.10509 -10.97036 -10.58116 -10.39482 -10.16945 -10.12541 -9.62354 -9.30022 -8.88161 -8.67977 -8.05501 -6.19140 -4.19362 1.17967 1.96998 2.61728 2.67487 3.22686 3.31103 3.36483 3.79634 4.32497 4.45174 4.59515 4.93437 5.12663 5.16850 5.18533 5.28597 5.42600 5.46111 5.72031 5.78651 5.82208 5.93942 6.07803 6.29699 6.55425 6.65403 6.66901 6.86492 7.05594 7.15057 7.42253 7.54075 7.70120 8.39266 8.86040 9.42051 10.93246 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.009831 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.479862 B = 2847.576415 C = 4067.240428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.128 3.872 3 N -0.979 5.979 4 C 0.213 3.787 5 C -0.539 4.539 6 H 0.079 0.921 7 C 0.075 3.925 8 N -0.897 5.897 9 Si 0.866 3.134 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.258 1.258 13 S 2.725 3.275 14 O -0.978 6.978 15 O -0.970 6.970 16 C -0.808 4.808 17 C 0.129 3.871 18 N -0.304 5.304 19 N -0.367 5.367 20 C 0.095 3.905 21 C 0.202 3.798 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.034 0.966 28 H 0.049 0.951 29 H 0.264 0.736 30 H 0.192 0.808 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.399 -0.581 -8.169 8.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.817 5.817 4 C 0.089 3.911 5 C -0.578 4.578 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.692 3.308 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.182 1.182 13 S 2.813 3.187 14 O -0.968 6.968 15 O -0.960 6.960 16 C -0.906 4.906 17 C -0.061 4.061 18 N -0.123 5.123 19 N -0.145 5.145 20 C -0.046 4.046 21 C 0.049 3.951 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.209 0.791 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 0.500 -0.545 -8.897 8.927 hybrid contribution -0.343 0.599 1.276 1.451 sum 0.157 0.054 -7.620 7.622 Atomic orbital electron populations 1.22225 0.96845 1.01590 1.02326 1.21038 0.93516 0.82505 1.02761 1.57199 1.78492 1.23157 1.22807 1.19604 0.97844 0.92538 0.81081 1.21496 1.01135 1.28866 1.06302 0.90288 1.24855 0.95017 0.96071 0.96823 1.69899 1.20728 1.43992 1.18876 0.86986 0.81669 0.81615 0.80492 1.19987 1.21024 1.18250 1.00757 0.72754 0.73060 0.72135 1.93494 1.70214 1.76025 1.57065 1.93508 1.86580 1.30399 1.85542 1.31694 1.25683 1.09164 1.24064 1.23390 0.91328 0.96283 0.95086 1.77279 1.14926 1.02393 1.17748 1.48933 1.06746 1.18062 1.40735 1.21988 0.78887 1.00769 1.02974 1.22457 0.84353 0.96948 0.91359 0.92336 0.92381 0.92139 0.91305 0.89999 0.94802 0.93273 0.92572 0.79121 0.90589 0.88617 0.89053 0.79131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 10.24 37.16 0.38 -2.13 16 2 C 0.13 2.14 6.06 -4.04 -0.02 2.12 16 3 N -0.98 -19.27 2.77 -115.66 -0.32 -19.59 16 4 C 0.21 4.79 4.50 -5.19 -0.02 4.77 16 5 C -0.54 -13.91 9.94 -34.44 -0.34 -14.25 16 6 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 7 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 8 N -0.90 -25.57 13.96 55.43 0.77 -24.80 16 9 Si 0.87 20.12 27.47 -169.99 -4.67 15.45 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 13 S 2.72 52.72 5.79 -107.50 -0.62 52.10 16 14 O -0.98 -19.06 16.84 -57.17 -0.96 -20.02 16 15 O -0.97 -20.96 16.40 -57.17 -0.94 -21.90 16 16 C -0.81 -14.87 6.17 -40.01 -0.25 -15.11 16 17 C 0.13 2.21 11.81 -17.36 -0.21 2.00 16 18 N -0.30 -5.36 12.58 30.63 0.39 -4.97 16 19 N -0.37 -6.02 4.01 -68.17 -0.27 -6.30 16 20 C 0.10 1.08 11.47 59.84 0.69 1.77 16 21 C 0.20 3.57 11.23 -17.23 -0.19 3.38 16 22 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 1.03 7.61 -51.93 -0.40 0.63 16 26 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 27 H 0.03 0.74 7.54 -51.93 -0.39 0.34 16 28 H 0.05 1.15 5.97 -51.93 -0.31 0.84 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.19 2.66 8.06 -52.48 -0.42 2.24 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.19 3.08 8.06 -52.48 -0.42 2.66 16 LS Contribution 308.02 15.07 4.64 4.64 Total: -1.00 -33.09 308.02 -6.54 -39.63 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.49 Total: 1.30 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -0.07 Total: -15.54 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.57 Total: -55.66 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -1.90 Total: -41.93 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.67 Total: 15.45 kcal Atomic # 16 Polarization: 52.72 SS G_CDS: -0.62 Total: 52.10 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.09 -6.54 -39.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050253772.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.048 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds