Wall clock time and date at job start Mon Mar 30 2020 01:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.46948 * 2 1 4 4 C 1.46496 * 120.00143 * 84.99730 * 3 2 1 5 5 C 1.50706 * 109.47106 * 84.99960 * 4 3 2 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00200 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00139 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47145 * 89.99836 * 9 7 5 11 11 H 1.48496 * 109.47547 * 210.00333 * 9 7 5 12 12 H 1.48499 * 109.47030 * 330.00237 * 9 7 5 13 13 S 1.65602 * 119.99575 * 265.00178 * 3 2 1 14 14 O 1.42094 * 106.40564 * 23.53691 * 13 3 2 15 15 O 1.42101 * 106.39758 * 156.46134 * 13 3 2 16 16 C 1.76201 * 107.21409 * 269.99554 * 13 3 2 17 17 C 1.39866 * 126.03701 * 90.03098 * 16 13 3 18 18 N 1.30841 * 108.20571 * 179.97438 * 17 16 13 19 19 N 1.40093 * 108.20092 * 0.02562 * 18 17 16 20 20 C 1.46493 * 126.03502 * 180.02562 * 19 18 17 21 21 C 1.34943 * 107.92321 * 359.75303 * 19 18 17 22 22 H 1.09008 * 109.47451 * 299.99920 * 1 2 3 23 23 H 1.08996 * 109.47456 * 60.00170 * 1 2 3 24 24 H 1.09004 * 109.47242 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47473 * 239.99986 * 2 1 3 26 26 H 1.09003 * 109.47077 * 119.99787 * 2 1 3 27 27 H 1.09001 * 109.47001 * 325.00251 * 4 3 2 28 28 H 1.09000 * 109.47574 * 205.00467 * 4 3 2 29 29 H 0.96999 * 120.00061 * 179.97438 * 8 7 5 30 30 H 1.08006 * 125.90286 * 359.97438 * 17 16 13 31 31 H 1.09005 * 109.47582 * 89.97045 * 20 19 18 32 32 H 1.08999 * 109.47396 * 209.97254 * 20 19 18 33 33 H 1.09000 * 109.47847 * 329.97298 * 20 19 18 34 34 H 1.08006 * 126.12495 * 180.24237 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1581 2.1088 1.2638 5 6 3.4947 1.7890 1.8823 6 1 4.1723 1.1119 1.3836 7 6 3.8524 2.3607 3.0848 8 7 5.0189 2.0820 3.6243 9 14 2.6807 3.5324 3.9472 10 1 1.7952 2.7649 4.8593 11 1 3.4599 4.5236 4.7318 12 1 1.8553 4.2404 2.9359 13 16 2.4120 2.1202 -1.4288 14 8 1.6868 1.4415 -2.4448 15 8 2.3055 3.5186 -1.1999 16 6 4.1169 1.7942 -1.7320 17 6 4.6330 0.7022 -2.4373 18 7 5.9373 0.8049 -2.4524 19 7 6.2929 1.9670 -1.7554 20 6 7.6558 2.4569 -1.5353 21 6 5.1578 2.5585 -1.3279 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.3616 1.8098 1.9452 28 1 2.0920 3.1804 1.0756 29 1 5.2707 2.4846 4.4701 30 1 4.0549 -0.0891 -2.8913 31 1 7.9411 3.1177 -2.3539 32 1 7.6972 3.0053 -0.5943 33 1 8.3434 1.6121 -1.4940 34 1 5.0921 3.4764 -0.7626 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050253772.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:39 Heat of formation + Delta-G solvation = -17.829674 kcal Electronic energy + Delta-G solvation = -19946.096707 eV Core-core repulsion = 16814.231778 eV Total energy + Delta-G solvation = -3131.864929 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.22200 -38.16951 -37.67968 -36.75987 -34.62157 -34.34067 -31.75887 -31.43908 -28.86455 -27.93762 -24.52758 -23.20058 -22.78973 -22.26244 -19.78943 -19.03857 -18.71936 -18.29051 -17.08615 -16.67746 -16.49727 -16.15751 -15.63112 -15.37360 -14.70269 -14.51464 -14.19953 -14.04188 -13.75395 -13.70227 -13.64237 -13.40186 -13.09653 -12.95715 -12.67272 -12.64669 -12.59063 -12.22416 -11.95008 -11.73595 -11.64686 -11.52631 -10.73262 -10.60683 -10.21994 -9.66215 -8.24795 -6.28494 -0.33398 0.61145 1.26398 1.40248 1.44601 1.49340 1.54356 2.29269 2.38994 2.94779 3.10856 3.26304 3.70004 3.82042 4.04550 4.14908 4.34435 4.44927 4.53675 4.56621 4.58748 4.61352 4.78898 5.00288 5.07920 5.12793 5.36458 5.47962 5.51522 5.53525 5.81263 5.89776 6.36600 6.37777 6.76735 7.35931 8.90348 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.009831 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.479862 B = 2847.576415 C = 4067.240428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.983 5.983 4 C 0.219 3.781 5 C -0.530 4.530 6 H 0.046 0.954 7 C 0.024 3.976 8 N -0.940 5.940 9 Si 0.922 3.078 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.246 1.246 13 S 2.737 3.263 14 O -0.979 6.979 15 O -0.995 6.995 16 C -0.824 4.824 17 C 0.124 3.876 18 N -0.319 5.319 19 N -0.366 5.366 20 C 0.083 3.917 21 C 0.186 3.814 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.265 0.735 30 H 0.218 0.782 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.220 -0.566 -8.471 8.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.008 4.008 3 N -0.821 5.821 4 C 0.094 3.906 5 C -0.569 4.569 6 H 0.065 0.935 7 C -0.175 4.175 8 N -0.580 5.580 9 Si 0.746 3.254 10 H -0.189 1.189 11 H -0.210 1.210 12 H -0.169 1.169 13 S 2.827 3.173 14 O -0.970 6.970 15 O -0.986 6.986 16 C -0.924 4.924 17 C -0.065 4.065 18 N -0.139 5.139 19 N -0.143 5.143 20 C -0.056 4.056 21 C 0.032 3.968 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.234 0.766 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.337 -0.545 -9.217 9.240 hybrid contribution 0.016 0.530 1.306 1.410 sum -0.322 -0.015 -7.911 7.918 Atomic orbital electron populations 1.22208 0.95012 1.03445 1.01991 1.21320 0.95110 0.81027 1.03370 1.57186 1.78901 1.24265 1.21726 1.19388 0.96279 0.92609 0.82313 1.21621 1.01922 1.27466 1.05930 0.93530 1.25600 0.96416 0.97780 0.97717 1.70026 1.22715 1.45720 1.19572 0.86079 0.79887 0.79720 0.79708 1.18917 1.21043 1.16934 1.00234 0.72870 0.72347 0.71855 1.93481 1.70668 1.75880 1.56941 1.93468 1.87156 1.32061 1.85886 1.31591 1.25224 1.10253 1.25305 1.23853 0.91383 0.96532 0.94748 1.77229 1.15218 1.03116 1.18317 1.49313 1.07968 1.17386 1.39618 1.22395 0.76779 1.01751 1.04707 1.22691 0.84996 0.97436 0.91719 0.92565 0.92782 0.89248 0.89578 0.90599 0.93470 0.93784 0.92551 0.76604 0.87676 0.87725 0.88147 0.78446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.53 10.24 71.98 0.74 -3.80 16 2 C 0.12 3.73 6.06 86.38 0.52 4.26 16 3 N -0.98 -37.79 2.77 -519.84 -1.44 -39.23 16 4 C 0.22 9.64 4.50 85.64 0.39 10.03 16 5 C -0.53 -27.41 9.94 25.60 0.25 -27.15 16 6 H 0.05 2.67 8.06 -2.91 -0.02 2.64 16 7 C 0.02 1.26 5.47 84.65 0.46 1.73 16 8 N -0.94 -54.18 13.96 21.44 0.30 -53.88 16 9 Si 0.92 40.71 27.47 68.60 1.88 42.60 16 10 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.25 -10.29 6.54 99.48 0.65 -9.64 16 13 S 2.74 103.91 5.79 -56.49 -0.33 103.59 16 14 O -0.98 -36.87 16.84 -128.00 -2.16 -39.02 16 15 O -1.00 -42.61 16.40 -128.00 -2.10 -44.71 16 16 C -0.82 -29.93 6.17 21.99 0.14 -29.80 16 17 C 0.12 4.13 11.81 85.23 1.01 5.13 16 18 N -0.32 -10.95 12.58 -57.02 -0.72 -11.66 16 19 N -0.37 -11.70 4.01 -369.58 -1.48 -13.19 16 20 C 0.08 1.78 11.47 127.77 1.47 3.25 16 21 C 0.19 6.55 11.23 83.54 0.94 7.49 16 22 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 23 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 25 H 0.09 2.42 7.61 -2.39 -0.02 2.40 16 26 H 0.08 2.50 8.11 -2.39 -0.02 2.48 16 27 H 0.05 1.96 7.54 -2.39 -0.02 1.94 16 28 H 0.04 2.01 5.97 -2.39 -0.01 1.99 16 29 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 30 H 0.22 5.68 8.06 -2.91 -0.02 5.66 16 31 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.20 6.45 8.06 -2.91 -0.02 6.43 16 Total: -1.00 -69.52 308.02 0.91 -68.61 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 1.04 Total: 15.77 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: 5.91 Total: -28.87 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -3.34 Total: -117.96 kcal Atomic # 8 Polarization: -79.48 SS G_CDS: -4.25 Total: -83.73 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 1.88 Total: 42.60 kcal Atomic # 16 Polarization: 103.91 SS G_CDS: -0.33 Total: 103.59 kcal Total: -69.52 0.91 -68.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050253772.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.776 kcal (2) G-P(sol) polarization free energy of solvation -69.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds