Wall clock time and date at job start Mon Mar 30 2020 01:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47064 * 2 1 4 4 C 1.36879 * 126.39693 * 265.00301 * 3 2 1 5 5 C 1.34669 * 106.81514 * 180.02562 * 4 3 2 6 6 S 1.76199 * 125.98871 * 180.02562 * 5 4 3 7 7 O 1.42106 * 106.40103 * 23.52462 * 6 5 4 8 8 O 1.42104 * 106.40208 * 156.44002 * 6 5 4 9 9 N 1.65598 * 107.21838 * 269.98408 * 6 5 4 10 10 C 1.46500 * 119.99814 * 269.99637 * 9 6 5 11 11 C 1.36932 * 120.00016 * 90.00130 * 9 6 5 12 12 H 1.07994 * 120.00345 * 20.61599 * 11 9 6 13 13 C 1.38819 * 119.99850 * 200.60990 * 11 9 6 14 14 N 1.31617 * 119.99731 * 14.76499 * 13 11 9 15 15 Si 1.86792 * 120.00087 * 194.75948 * 13 11 9 16 16 H 1.48500 * 109.47033 * 85.00831 * 15 13 11 17 17 H 1.48497 * 109.47364 * 205.01148 * 15 13 11 18 18 H 1.48501 * 109.47219 * 325.01112 * 15 13 11 19 19 N 1.34127 * 108.02147 * 0.02562 * 5 4 3 20 20 C 1.30495 * 109.25532 * 359.97438 * 19 5 4 21 21 C 1.50704 * 125.64950 * 180.02562 * 20 19 5 22 22 H 1.09005 * 109.46710 * 299.99409 * 1 2 3 23 23 H 1.08991 * 109.47064 * 59.99632 * 1 2 3 24 24 H 1.09000 * 109.46708 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46385 * 240.00178 * 2 1 3 26 26 H 1.08998 * 109.47338 * 120.00631 * 2 1 3 27 27 H 1.08003 * 126.59458 * 0.02562 * 4 3 2 28 28 H 1.09004 * 109.46968 * 95.00272 * 10 9 6 29 29 H 1.09003 * 109.47297 * 214.99909 * 10 9 6 30 30 H 1.08999 * 109.47411 * 335.00581 * 10 9 6 31 31 H 0.97004 * 120.00283 * 179.97438 * 14 13 11 32 32 H 1.09004 * 109.46553 * 89.98140 * 21 20 19 33 33 H 1.09003 * 109.47326 * 209.97835 * 21 20 19 34 34 H 1.09001 * 109.47045 * 329.98176 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3796 2.1150 -1.0976 5 6 2.7660 3.3242 -0.6479 6 16 3.3318 4.6656 -1.6404 7 8 2.7980 4.4559 -2.9405 8 8 3.1006 5.8479 -0.8866 9 7 4.9750 4.5134 -1.7794 10 6 5.8554 5.1527 -0.7984 11 6 5.5107 3.7902 -2.8114 12 1 4.9263 3.6027 -3.7000 13 6 6.8051 3.2980 -2.7154 14 7 7.4123 3.2665 -1.5481 15 14 7.6852 2.6803 -4.2429 16 1 8.3241 3.8238 -4.9425 17 1 8.7256 1.6960 -3.8508 18 1 6.7053 2.0301 -5.1498 19 7 2.6445 3.3284 0.6879 20 6 2.1971 2.1679 1.0829 21 6 1.9246 1.7715 2.5112 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.3587 1.7873 -2.1265 28 1 6.1159 4.4341 -0.0213 29 1 6.7631 5.4965 -1.2944 30 1 5.3423 6.0032 -0.3495 31 1 8.3167 2.9223 -1.4808 32 1 0.8939 2.0180 2.7663 33 1 2.0809 0.6990 2.6267 34 1 2.6019 2.3108 3.1734 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050265712.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:57 Heat of formation + Delta-G solvation = -33.481761 kcal Electronic energy + Delta-G solvation = -19776.452533 eV Core-core repulsion = 16643.908879 eV Total energy + Delta-G solvation = -3132.543655 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.10063 -37.76661 -37.44710 -36.41278 -35.98056 -33.28095 -32.78180 -31.07297 -28.27789 -28.03771 -25.36617 -24.79497 -22.97930 -20.81989 -20.20735 -19.13956 -18.56451 -18.08583 -16.96002 -16.56157 -16.41249 -16.12720 -15.41461 -15.21691 -14.95283 -14.54312 -14.26395 -13.99365 -13.68754 -13.47298 -13.36877 -13.18291 -13.00493 -12.92425 -12.74261 -12.64986 -12.34310 -12.25543 -12.17851 -12.10836 -11.85572 -11.12622 -10.97815 -10.73657 -9.96789 -9.62611 -8.29976 -5.91200 -0.04385 0.78082 1.50442 1.55744 1.63156 1.72865 1.77394 2.33393 2.76284 2.98297 3.25846 3.46080 3.67540 3.77417 4.01445 4.03538 4.26006 4.39348 4.60475 4.62674 4.67271 4.69946 4.77134 4.96537 5.02618 5.16126 5.18953 5.26016 5.41691 5.42209 5.60071 6.23096 6.45049 6.88273 6.93885 7.31323 8.68780 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.019456 B = 0.007035 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.793208 B = 3979.027416 C = 4435.552465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.085 3.915 3 N -0.449 5.449 4 C 0.048 3.952 5 C -0.572 4.572 6 S 2.608 3.392 7 O -1.004 7.004 8 O -1.017 7.017 9 N -0.826 5.826 10 C 0.138 3.862 11 C -0.291 4.291 12 H 0.111 0.889 13 C -0.003 4.003 14 N -0.873 5.873 15 Si 0.991 3.009 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.259 1.259 19 N -0.472 5.472 20 C 0.189 3.811 21 C -0.061 4.061 22 H 0.062 0.938 23 H 0.047 0.953 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.121 0.879 27 H 0.199 0.801 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.276 0.724 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.515 -11.758 4.516 14.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.035 4.035 3 N -0.131 5.131 4 C -0.092 4.092 5 C -0.780 4.780 6 S 2.705 3.295 7 O -0.994 6.994 8 O -1.007 7.007 9 N -0.653 5.653 10 C -0.008 4.008 11 C -0.435 4.435 12 H 0.128 0.872 13 C -0.211 4.211 14 N -0.512 5.512 15 Si 0.814 3.186 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.182 1.182 19 N -0.191 5.191 20 C -0.077 4.077 21 C -0.119 4.119 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.127 0.873 25 H 0.126 0.874 26 H 0.139 0.861 27 H 0.216 0.784 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.963 -10.598 4.910 14.136 hybrid contribution 0.382 -1.276 -0.700 1.505 sum -7.581 -11.874 4.210 14.703 Atomic orbital electron populations 1.22147 0.92600 1.04825 1.02526 1.22398 0.96841 0.77432 1.06864 1.45966 1.47403 1.14051 1.05680 1.22801 1.00742 0.91380 0.94280 1.34430 1.21241 1.19085 1.03210 1.07683 0.74461 0.74933 0.72412 1.93325 1.80056 1.87290 1.38722 1.93301 1.85986 1.48292 1.73088 1.53762 1.20461 1.59011 1.32048 1.21097 0.93515 0.94726 0.91438 1.20052 0.99055 1.31301 0.93064 0.87181 1.26441 0.98439 0.95461 1.00752 1.70232 1.14332 1.41867 1.24797 0.84970 0.77985 0.78303 0.77389 1.19384 1.20143 1.18243 1.70175 1.17750 1.21725 1.09463 1.24517 1.02397 0.87277 0.93492 1.20385 1.04187 1.03517 0.83783 0.91891 0.93388 0.87276 0.87442 0.86101 0.78424 0.94265 0.91389 0.93355 0.91420 0.88385 0.87608 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 10.24 71.98 0.74 -1.58 16 2 C 0.08 1.49 6.61 86.38 0.57 2.06 16 3 N -0.45 -13.93 2.75 -514.28 -1.41 -15.35 16 4 C 0.05 1.90 11.31 83.09 0.94 2.84 16 5 C -0.57 -27.30 7.13 83.52 0.60 -26.70 16 6 S 2.61 137.09 5.81 -56.49 -0.33 136.76 16 7 O -1.00 -54.24 16.63 -128.00 -2.13 -56.37 16 8 O -1.02 -57.84 16.57 -128.00 -2.12 -59.96 16 9 N -0.83 -44.02 3.31 -364.89 -1.21 -45.23 16 10 C 0.14 7.08 8.94 127.77 1.14 8.22 16 11 C -0.29 -15.38 9.45 84.04 0.79 -14.58 16 12 H 0.11 5.71 7.16 -2.91 -0.02 5.69 16 13 C 0.00 -0.14 5.07 84.86 0.43 0.29 16 14 N -0.87 -45.06 10.67 21.65 0.23 -44.83 16 15 Si 0.99 38.87 29.58 68.60 2.03 40.90 16 16 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 17 H -0.28 -10.45 7.11 99.48 0.71 -9.74 16 18 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 19 N -0.47 -21.78 11.25 -185.63 -2.09 -23.87 16 20 C 0.19 6.55 7.90 138.13 1.09 7.64 16 21 C -0.06 -1.31 10.19 71.24 0.73 -0.58 16 22 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 23 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 24 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.12 1.46 7.21 -2.39 -0.02 1.44 16 27 H 0.20 6.91 8.06 -2.91 -0.02 6.89 16 28 H 0.04 2.06 7.40 -2.38 -0.02 2.04 16 29 H 0.07 3.42 7.22 -2.39 -0.02 3.40 16 30 H 0.05 2.37 6.91 -2.39 -0.02 2.36 16 31 H 0.28 13.23 8.31 -92.71 -0.77 12.46 16 32 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.11 1.48 7.17 -2.39 -0.02 1.46 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -76.23 303.00 1.10 -75.13 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.10 Total: 15.19 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 7.03 Total: -22.38 kcal Atomic # 7 Polarization: -124.79 SS G_CDS: -4.48 Total: -129.27 kcal Atomic # 8 Polarization: -112.08 SS G_CDS: -4.25 Total: -116.33 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Atomic # 16 Polarization: 137.09 SS G_CDS: -0.33 Total: 136.76 kcal Total: -76.23 1.10 -75.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050265712.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.647 kcal (2) G-P(sol) polarization free energy of solvation -76.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds