Wall clock time and date at job start Mon Mar 30 2020 00:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.46746 * 239.99818 * 2 1 3 13 13 C 1.46498 * 120.00302 * 299.99454 * 12 2 1 14 14 S 1.65605 * 119.99763 * 120.00700 * 12 2 1 15 15 O 1.42094 * 106.39865 * 203.53455 * 14 12 2 16 16 O 1.42097 * 106.39888 * 336.45428 * 14 12 2 17 17 C 1.76201 * 107.21878 * 89.99213 * 14 12 2 18 18 C 1.39866 * 126.04189 * 269.68920 * 17 14 12 19 19 N 1.30841 * 108.19995 * 179.81813 * 18 17 14 20 20 N 1.40078 * 108.20541 * 0.44484 * 19 18 17 21 21 C 1.46507 * 126.03793 * 179.69840 * 20 19 18 22 22 C 1.34952 * 107.93034 * 359.71195 * 20 19 18 23 23 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 25 25 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 26 26 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.46952 * 90.00255 * 13 12 2 28 28 H 1.08996 * 109.47624 * 210.00774 * 13 12 2 29 29 H 1.09005 * 109.46962 * 330.01182 * 13 12 2 30 30 H 1.07996 * 125.89384 * 0.02562 * 18 17 14 31 31 H 1.08997 * 109.46867 * 270.01964 * 21 20 19 32 32 H 1.09000 * 109.46888 * 30.01801 * 21 20 19 33 33 H 1.08997 * 109.47329 * 150.01450 * 21 20 19 34 34 H 1.07998 * 126.12879 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.3426 -2.1615 4.4119 10 1 3.6292 -1.7582 3.7123 11 1 2.4864 -0.1412 5.1123 12 7 2.0183 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4279 14 16 2.9705 0.1141 -2.2862 15 8 2.8228 -0.5647 -3.5258 16 8 2.6904 1.4972 -2.1192 17 6 4.6445 -0.1183 -1.7879 18 6 5.3683 0.7095 -0.9235 19 7 6.5709 0.2112 -0.7921 20 7 6.6536 -0.9455 -1.5779 21 6 7.8298 -1.8070 -1.7224 22 6 5.4588 -1.1260 -2.1786 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 0.7088 1.1615 3.4843 27 1 0.7375 -2.1445 -1.9993 28 1 2.4628 -2.5820 -1.9862 29 1 1.5294 -2.5969 -0.4707 30 1 4.9973 1.6035 -0.4445 31 1 8.4373 -1.4555 -2.5563 32 1 8.4182 -1.7753 -0.8054 33 1 7.5089 -2.8311 -1.9129 34 1 5.1992 -1.9302 -2.8510 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095000.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:06 Heat of formation + Delta-G solvation = 9.978547 kcal Electronic energy + Delta-G solvation = -19905.385979 eV Core-core repulsion = 16774.726904 eV Total energy + Delta-G solvation = -3130.659074 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.03674 -36.55607 -36.08824 -35.13345 -33.31543 -32.56704 -30.25654 -29.03848 -26.96102 -25.45616 -25.14309 -21.69996 -21.12410 -20.63170 -18.39064 -17.41669 -16.72755 -16.36184 -15.51246 -15.42273 -15.17671 -14.55459 -14.27918 -13.46496 -13.23425 -13.03545 -12.89127 -12.70481 -12.62874 -11.92898 -11.72280 -11.54214 -11.31535 -11.24560 -11.17427 -10.92981 -10.83147 -10.39874 -10.36862 -10.17395 -10.02023 -9.42700 -9.26534 -8.95866 -8.45612 -7.89688 -6.06984 -4.14748 1.18295 1.74560 2.49884 2.62326 3.25476 3.33185 3.35221 3.86826 4.37783 4.39240 4.55190 4.67195 4.93505 4.97748 5.20096 5.23726 5.31487 5.65479 5.69271 5.82310 6.20510 6.35484 6.62996 6.70246 6.87731 6.91386 6.93853 7.15804 7.51719 7.61359 7.65964 7.82086 8.08380 8.29264 8.88057 9.51286 10.98033 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.016572 B = 0.008368 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.218960 B = 3345.471150 C = 4313.840374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.267 3.733 3 H 0.062 0.938 4 C -0.524 4.524 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.276 1.276 11 H -0.286 1.286 12 N -0.982 5.982 13 C 0.107 3.893 14 S 2.717 3.283 15 O -0.985 6.985 16 O -0.962 6.962 17 C -0.800 4.800 18 C 0.147 3.853 19 N -0.302 5.302 20 N -0.371 5.371 21 C 0.095 3.905 22 C 0.166 3.834 23 H 0.032 0.968 24 H 0.092 0.908 25 H 0.014 0.986 26 H 0.263 0.737 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.199 0.801 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.555 -6.334 -7.953 13.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.201 1.201 11 H -0.211 1.211 12 N -0.822 5.822 13 C -0.040 4.040 14 S 2.805 3.195 15 O -0.975 6.975 16 O -0.952 6.952 17 C -0.897 4.897 18 C -0.042 4.042 19 N -0.121 5.121 20 N -0.149 5.149 21 C -0.046 4.046 22 C 0.014 3.986 23 H 0.051 0.949 24 H 0.111 0.889 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.215 0.785 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 9.559 -5.716 -7.964 13.692 hybrid contribution 0.173 -0.997 1.090 1.487 sum 9.733 -6.713 -6.874 13.676 Atomic orbital electron populations 1.22054 0.97829 0.99670 1.00835 1.18757 0.91869 0.92915 0.80054 0.92015 1.21376 1.31691 1.13070 0.90238 0.92079 1.24894 0.94999 0.94968 0.98870 1.69877 1.36290 1.22518 1.23756 0.86571 0.79099 0.79401 0.82735 1.20688 1.20132 1.21144 1.57434 1.63321 1.21411 1.40008 1.21189 0.98942 0.82015 1.01824 1.01054 0.72372 0.73387 0.72696 1.93483 1.86419 1.76048 1.41582 1.93534 1.83800 1.31498 1.86380 1.31983 1.27654 1.08616 1.21494 1.23556 0.89450 0.98073 0.93100 1.77396 1.21164 0.97868 1.15667 1.49026 1.10549 1.20840 1.34480 1.21952 0.85789 0.92734 1.04119 1.22368 0.84763 0.97355 0.94133 0.94905 0.88906 0.96717 0.92654 0.93659 0.93304 0.90267 0.78475 0.90442 0.88961 0.89188 0.79601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.97 37.16 0.33 -3.06 16 2 C 0.27 6.44 2.62 -69.08 -0.18 6.26 16 3 H 0.06 1.63 6.91 -51.93 -0.36 1.27 16 4 C -0.52 -13.44 7.99 -34.44 -0.28 -13.71 16 5 H 0.06 1.54 7.33 -52.49 -0.38 1.16 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.25 11.32 55.43 0.63 -23.63 16 8 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.98 -20.10 3.06 -115.86 -0.35 -20.46 16 13 C 0.11 1.84 9.28 59.85 0.56 2.40 16 14 S 2.72 53.05 5.78 -107.50 -0.62 52.43 16 15 O -0.99 -19.33 16.92 -57.17 -0.97 -20.30 16 16 O -0.96 -21.58 16.43 -57.17 -0.94 -22.52 16 17 C -0.80 -14.14 6.17 -40.01 -0.25 -14.39 16 18 C 0.15 2.68 11.81 -17.36 -0.21 2.48 16 19 N -0.30 -5.26 12.58 30.62 0.39 -4.88 16 20 N -0.37 -5.27 4.01 -68.16 -0.27 -5.54 16 21 C 0.10 0.81 11.47 59.85 0.69 1.49 16 22 C 0.17 2.42 11.24 -17.22 -0.19 2.23 16 23 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 24 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.70 7.79 -51.93 -0.40 0.30 16 29 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 30 H 0.20 3.39 8.06 -52.49 -0.42 2.97 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.19 1.98 8.06 -52.49 -0.42 1.55 16 LS Contribution 303.75 15.07 4.58 4.58 Total: -1.00 -33.13 303.75 -6.53 -39.66 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -4.32 Total: -0.28 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 0.38 Total: -14.68 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.38 Total: -54.50 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -1.91 Total: -42.82 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 53.05 SS G_CDS: -0.62 Total: 52.43 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.13 -6.53 -39.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095000.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.638 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds