Wall clock time and date at job start Mon Mar 30 2020 00:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.46746 * 239.99818 * 2 1 3 13 13 C 1.46498 * 120.00302 * 299.99454 * 12 2 1 14 14 S 1.65605 * 119.99763 * 120.00700 * 12 2 1 15 15 O 1.42094 * 106.39865 * 203.53455 * 14 12 2 16 16 O 1.42097 * 106.39888 * 336.45428 * 14 12 2 17 17 C 1.76201 * 107.21878 * 89.99213 * 14 12 2 18 18 C 1.39866 * 126.04189 * 269.68920 * 17 14 12 19 19 N 1.30841 * 108.19995 * 179.81813 * 18 17 14 20 20 N 1.40078 * 108.20541 * 0.44484 * 19 18 17 21 21 C 1.46507 * 126.03793 * 179.69840 * 20 19 18 22 22 C 1.34952 * 107.93034 * 359.71195 * 20 19 18 23 23 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 25 25 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 26 26 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.46952 * 90.00255 * 13 12 2 28 28 H 1.08996 * 109.47624 * 210.00774 * 13 12 2 29 29 H 1.09005 * 109.46962 * 330.01182 * 13 12 2 30 30 H 1.07996 * 125.89384 * 0.02562 * 18 17 14 31 31 H 1.08997 * 109.46867 * 270.01964 * 21 20 19 32 32 H 1.09000 * 109.46888 * 30.01801 * 21 20 19 33 33 H 1.08997 * 109.47329 * 150.01450 * 21 20 19 34 34 H 1.07998 * 126.12879 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.3426 -2.1615 4.4119 10 1 3.6292 -1.7582 3.7123 11 1 2.4864 -0.1412 5.1123 12 7 2.0183 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4279 14 16 2.9705 0.1141 -2.2862 15 8 2.8228 -0.5647 -3.5258 16 8 2.6904 1.4972 -2.1192 17 6 4.6445 -0.1183 -1.7879 18 6 5.3683 0.7095 -0.9235 19 7 6.5709 0.2112 -0.7921 20 7 6.6536 -0.9455 -1.5779 21 6 7.8298 -1.8070 -1.7224 22 6 5.4588 -1.1260 -2.1786 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 0.7088 1.1615 3.4843 27 1 0.7375 -2.1445 -1.9993 28 1 2.4628 -2.5820 -1.9862 29 1 1.5294 -2.5969 -0.4707 30 1 4.9973 1.6035 -0.4445 31 1 8.4373 -1.4555 -2.5563 32 1 8.4182 -1.7753 -0.8054 33 1 7.5089 -2.8311 -1.9129 34 1 5.1992 -1.9302 -2.8510 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095000.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:05 Heat of formation + Delta-G solvation = -14.559951 kcal Electronic energy + Delta-G solvation = -19906.450048 eV Core-core repulsion = 16774.726904 eV Total energy + Delta-G solvation = -3131.723144 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.23993 -38.16832 -37.79812 -36.74561 -34.46359 -34.34921 -31.50229 -30.85127 -27.90226 -27.19160 -26.90678 -23.01644 -22.45897 -22.24327 -19.80404 -18.82562 -18.36026 -18.21154 -16.98955 -16.68124 -16.49212 -16.25201 -15.49315 -15.13970 -14.79988 -14.36766 -14.13374 -13.74271 -13.66311 -13.62303 -13.30012 -13.13499 -13.05808 -12.93675 -12.67046 -12.64445 -12.60220 -12.18641 -12.09074 -11.85306 -11.68516 -11.11072 -10.62199 -10.46544 -10.21470 -9.54985 -8.06461 -6.19979 -0.32067 0.58689 1.23555 1.43403 1.45501 1.51613 1.53598 2.33097 2.48965 2.99084 3.21858 3.28830 3.69978 3.82620 4.15685 4.22714 4.39268 4.49381 4.59015 4.65909 4.80167 4.89268 5.05488 5.09191 5.22561 5.29912 5.34940 5.66078 5.77552 5.87459 5.93361 6.16626 6.34298 6.36249 6.88960 7.48845 8.97989 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.016572 B = 0.008368 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.218960 B = 3345.471150 C = 4313.840374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.272 3.728 3 H 0.029 0.971 4 C -0.526 4.526 5 H 0.064 0.936 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.953 3.047 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.289 1.289 12 N -0.989 5.989 13 C 0.097 3.903 14 S 2.732 3.268 15 O -0.985 6.985 16 O -1.001 7.001 17 C -0.825 4.825 18 C 0.125 3.875 19 N -0.323 5.323 20 N -0.362 5.362 21 C 0.081 3.919 22 C 0.182 3.818 23 H 0.044 0.956 24 H 0.069 0.931 25 H 0.022 0.978 26 H 0.263 0.737 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.189 0.811 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.023 -8.942 -8.751 16.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.167 3.833 3 H 0.047 0.953 4 C -0.565 4.565 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.215 1.215 12 N -0.828 5.828 13 C -0.049 4.049 14 S 2.824 3.176 15 O -0.975 6.975 16 O -0.992 6.992 17 C -0.925 4.925 18 C -0.064 4.064 19 N -0.143 5.143 20 N -0.140 5.140 21 C -0.058 4.058 22 C 0.027 3.973 23 H 0.063 0.937 24 H 0.087 0.913 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.206 0.794 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.144 0.856 34 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 11.020 -8.346 -8.778 16.376 hybrid contribution -0.156 -0.246 1.254 1.287 sum 10.864 -8.592 -7.525 15.763 Atomic orbital electron populations 1.21935 0.97650 1.00137 1.00064 1.18409 0.92015 0.91623 0.81229 0.95294 1.21615 1.31183 1.12906 0.90842 0.91753 1.25612 0.95349 0.95641 1.01569 1.70008 1.37497 1.23829 1.24192 0.85641 0.78649 0.78332 0.79439 1.19868 1.19866 1.21453 1.57319 1.64141 1.22665 1.38704 1.21447 1.00854 0.80308 1.02242 1.00293 0.72724 0.72300 0.72332 1.93469 1.86878 1.75783 1.41392 1.93481 1.84847 1.33974 1.86856 1.31613 1.26836 1.10645 1.23413 1.23572 0.90237 0.98572 0.93985 1.77312 1.20702 0.99506 1.16818 1.49441 1.11901 1.19913 1.32739 1.22503 0.84367 0.93667 1.05271 1.22986 0.84014 0.96974 0.93320 0.93688 0.91280 0.95884 0.92774 0.92567 0.90009 0.90823 0.79412 0.88180 0.88685 0.85554 0.75225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.57 8.97 71.98 0.65 -5.93 16 2 C 0.27 13.30 2.62 44.24 0.12 13.42 16 3 H 0.03 1.61 6.91 -2.39 -0.02 1.59 16 4 C -0.53 -26.98 7.99 25.60 0.20 -26.78 16 5 H 0.06 3.19 7.33 -2.91 -0.02 3.17 16 6 C 0.02 0.95 5.30 84.66 0.45 1.40 16 7 N -0.92 -51.16 11.32 21.45 0.24 -50.92 16 8 Si 0.95 42.22 29.54 68.60 2.03 44.24 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 12 N -0.99 -39.86 3.06 -520.45 -1.59 -41.46 16 13 C 0.10 3.13 9.28 127.77 1.19 4.32 16 14 S 2.73 105.49 5.78 -56.49 -0.33 105.16 16 15 O -0.98 -36.75 16.92 -128.00 -2.17 -38.92 16 16 O -1.00 -46.33 16.43 -128.00 -2.10 -48.44 16 17 C -0.82 -28.27 6.17 21.99 0.14 -28.14 16 18 C 0.12 4.60 11.81 85.23 1.01 5.61 16 19 N -0.32 -10.97 12.58 -57.03 -0.72 -11.69 16 20 N -0.36 -9.20 4.01 -369.55 -1.48 -10.68 16 21 C 0.08 1.03 11.47 127.77 1.47 2.49 16 22 C 0.18 4.69 11.24 83.54 0.94 5.63 16 23 H 0.04 1.96 7.67 -2.39 -0.02 1.94 16 24 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 25 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 27 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.08 2.07 7.79 -2.39 -0.02 2.06 16 29 H 0.07 2.46 7.02 -2.38 -0.02 2.45 16 30 H 0.19 6.93 8.06 -2.91 -0.02 6.90 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.23 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -72.07 303.75 1.13 -70.94 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 1.10 Total: 9.74 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 6.15 Total: -27.99 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -3.55 Total: -114.75 kcal Atomic # 8 Polarization: -83.09 SS G_CDS: -4.27 Total: -87.36 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 105.49 SS G_CDS: -0.33 Total: 105.16 kcal Total: -72.07 1.13 -70.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095000.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.381 kcal (2) G-P(sol) polarization free energy of solvation -72.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds