Wall clock time and date at job start Mon Mar 30 2020 00:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46982 * 2 1 4 4 C 1.50702 * 109.47127 * 119.99659 * 2 1 3 5 5 H 1.07998 * 120.00106 * 119.99680 * 4 2 1 6 6 C 1.37879 * 119.99994 * 300.00217 * 4 2 1 7 7 N 1.31519 * 119.99942 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00076 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47149 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47181 * 119.99802 * 8 6 4 11 11 H 1.48501 * 109.47181 * 240.00069 * 8 6 4 12 12 N 1.46502 * 109.47095 * 239.99947 * 2 1 3 13 13 C 1.46497 * 119.99636 * 299.99453 * 12 2 1 14 14 S 1.65595 * 119.99932 * 120.00420 * 12 2 1 15 15 O 1.42101 * 106.40114 * 156.45853 * 14 12 2 16 16 O 1.42100 * 106.40818 * 23.53474 * 14 12 2 17 17 C 1.76198 * 107.21622 * 269.99314 * 14 12 2 18 18 C 1.34673 * 125.99195 * 149.99966 * 17 14 12 19 19 N 1.36877 * 106.81946 * 180.02562 * 18 17 14 20 20 C 1.46506 * 126.39525 * 179.97438 * 19 18 17 21 21 C 1.35035 * 107.20678 * 0.26506 * 19 18 17 22 22 N 1.30502 * 108.69990 * 359.56192 * 21 19 18 23 23 H 1.09003 * 109.46898 * 59.99889 * 1 2 3 24 24 H 1.08998 * 109.47291 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47338 * 300.00676 * 1 2 3 26 26 H 0.96997 * 119.99782 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.47617 * 270.00134 * 13 12 2 28 28 H 1.08999 * 109.47254 * 30.00874 * 13 12 2 29 29 H 1.09000 * 109.46944 * 150.00118 * 13 12 2 30 30 H 1.08001 * 126.58952 * 0.03958 * 18 17 14 31 31 H 1.08999 * 109.46892 * 90.00533 * 20 19 18 32 32 H 1.09000 * 109.46803 * 209.99707 * 20 19 18 33 33 H 1.09000 * 109.47214 * 330.00500 * 20 19 18 34 34 H 1.08000 * 125.65158 * 179.70892 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3213 -1.1201 4.0080 9 1 3.1454 -2.2875 3.6040 10 1 3.1465 -0.1871 4.8165 11 1 1.1660 -1.5864 4.8161 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4279 14 16 2.9705 0.1141 -2.2862 15 8 3.7119 -0.8790 -2.9813 16 8 3.5795 1.1829 -1.5749 17 6 1.8962 0.8533 -3.4711 18 6 2.1310 1.9922 -4.1504 19 7 1.0466 2.2021 -4.9587 20 6 0.8549 3.3228 -5.8826 21 6 0.1835 1.1866 -4.7409 22 7 0.7008 0.3808 -3.8543 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7095 1.1620 3.4843 27 1 2.4158 -2.7377 -0.9715 28 1 0.6905 -2.3002 -0.9846 29 1 1.6238 -2.2853 -2.5000 30 1 3.0069 2.6194 -4.0724 31 1 1.2607 3.0615 -6.8599 32 1 -0.2095 3.5380 -5.9769 33 1 1.3709 4.2027 -5.4984 34 1 -0.7749 1.0608 -5.2225 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095009.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:59 Heat of formation + Delta-G solvation = -2.659427 kcal Electronic energy + Delta-G solvation = -19774.288356 eV Core-core repulsion = 16643.081258 eV Total energy + Delta-G solvation = -3131.207098 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.08307 -36.47168 -35.98997 -35.12411 -34.19693 -32.45475 -29.81983 -28.91371 -27.34762 -25.38891 -25.00734 -22.22431 -21.48471 -20.44381 -18.37506 -17.54717 -16.61868 -16.22386 -15.94235 -15.61633 -15.11196 -14.51388 -14.25371 -14.06732 -13.38414 -13.20616 -13.07288 -12.92370 -12.64736 -11.84253 -11.57672 -11.39263 -11.21185 -11.07752 -11.06728 -10.86353 -10.66387 -10.33673 -10.13397 -10.05709 -9.87222 -9.82706 -9.08905 -8.86886 -8.35564 -7.77903 -5.97066 -4.02838 1.18902 1.73115 2.59403 2.81729 3.35036 3.42580 3.47595 3.68377 4.34049 4.47388 4.52276 4.65485 4.69890 4.75620 5.01394 5.17431 5.34496 5.50468 5.86567 5.94676 6.26832 6.42131 6.57075 6.82624 6.95509 6.98259 7.02488 7.20342 7.62156 7.77558 7.81918 7.92741 8.17302 8.40353 9.00095 9.62161 11.08767 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.028973 B = 0.005902 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.181555 B = 4743.044997 C = 5004.225733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.514 4.514 5 H 0.064 0.936 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.968 5.968 13 C 0.114 3.886 14 S 2.714 3.286 15 O -0.973 6.973 16 O -0.955 6.955 17 C -0.544 4.544 18 C 0.053 3.947 19 N -0.461 5.461 20 C 0.069 3.931 21 C 0.177 3.823 22 N -0.413 5.413 23 H 0.013 0.987 24 H 0.034 0.966 25 H 0.090 0.910 26 H 0.261 0.739 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.189 0.811 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 4.256 -16.026 16.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.554 4.554 5 H 0.082 0.918 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.808 5.808 13 C -0.032 4.032 14 S 2.799 3.201 15 O -0.963 6.963 16 O -0.945 6.945 17 C -0.753 4.753 18 C -0.087 4.087 19 N -0.143 5.143 20 C -0.074 4.074 21 C -0.108 4.108 22 N -0.129 5.129 23 H 0.032 0.968 24 H 0.053 0.947 25 H 0.108 0.892 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.206 0.794 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -2.314 3.829 -15.736 16.359 hybrid contribution -0.232 0.689 0.098 0.734 sum -2.546 4.518 -15.638 16.476 Atomic orbital electron populations 1.22076 0.98245 0.99777 1.00464 1.18761 0.91460 0.93009 0.80239 0.92380 1.21406 1.31226 1.12856 0.89934 0.91752 1.24910 0.95069 0.95052 0.98951 1.69891 1.36873 1.22874 1.23484 0.86441 0.78542 0.79680 0.82738 1.19670 1.21001 1.21102 1.57116 1.70136 1.19574 1.34023 1.21149 1.01406 0.81317 0.99369 1.01472 0.73261 0.73160 0.72196 1.93520 1.68645 1.58879 1.75233 1.93582 1.73529 1.56624 1.70722 1.34070 1.10491 1.08199 1.22505 1.22566 0.93481 0.98606 0.94036 1.45692 1.15762 1.21067 1.31761 1.22148 1.04380 0.87959 0.92886 1.25300 0.98246 0.86739 1.00524 1.70328 1.05781 1.26569 1.10267 0.96827 0.94735 0.89195 0.92901 0.93411 0.91021 0.92759 0.79424 0.90152 0.89023 0.89215 0.77200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.95 37.16 0.33 -3.22 16 2 C 0.27 6.92 2.62 -69.08 -0.18 6.74 16 3 H 0.06 1.64 6.91 -51.93 -0.36 1.28 16 4 C -0.51 -14.28 8.37 -34.44 -0.29 -14.57 16 5 H 0.06 1.77 7.65 -52.49 -0.40 1.37 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.47 11.32 55.43 0.63 -24.85 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.97 -21.89 3.06 -115.85 -0.35 -22.24 16 13 C 0.11 2.26 9.53 59.85 0.57 2.83 16 14 S 2.71 58.02 5.77 -107.50 -0.62 57.40 16 15 O -0.97 -21.77 17.09 -57.17 -0.98 -22.75 16 16 O -0.95 -22.61 16.52 -57.17 -0.94 -23.55 16 17 C -0.54 -9.97 7.08 -17.81 -0.13 -10.10 16 18 C 0.05 0.77 11.44 -16.56 -0.19 0.58 16 19 N -0.46 -5.30 3.15 -125.99 -0.40 -5.70 16 20 C 0.07 0.39 11.18 59.85 0.67 1.06 16 21 C 0.18 2.28 12.56 -90.38 -1.14 1.15 16 22 N -0.41 -7.22 11.25 -13.86 -0.16 -7.38 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.03 0.79 6.66 -51.93 -0.35 0.44 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.37 6.43 -51.93 -0.33 1.04 16 29 H 0.05 0.97 7.79 -51.93 -0.40 0.57 16 30 H 0.19 2.17 8.06 -52.49 -0.42 1.75 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.21 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 302.70 15.07 4.56 4.56 Total: -1.00 -35.99 302.70 -7.98 -43.97 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -4.25 Total: -2.09 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -0.44 Total: -13.91 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.28 Total: -60.16 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -1.92 Total: -46.30 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 58.02 SS G_CDS: -0.62 Total: 57.40 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.99 -7.98 -43.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095009.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.312 kcal (2) G-P(sol) polarization free energy of solvation -35.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds