Wall clock time and date at job start Mon Mar 30 2020 00:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46982 * 2 1 4 4 C 1.50702 * 109.47127 * 119.99659 * 2 1 3 5 5 H 1.07998 * 120.00106 * 119.99680 * 4 2 1 6 6 C 1.37879 * 119.99994 * 300.00217 * 4 2 1 7 7 N 1.31519 * 119.99942 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00076 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47149 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47181 * 119.99802 * 8 6 4 11 11 H 1.48501 * 109.47181 * 240.00069 * 8 6 4 12 12 N 1.46502 * 109.47095 * 239.99947 * 2 1 3 13 13 C 1.46497 * 119.99636 * 299.99453 * 12 2 1 14 14 S 1.65595 * 119.99932 * 120.00420 * 12 2 1 15 15 O 1.42101 * 106.40114 * 156.45853 * 14 12 2 16 16 O 1.42100 * 106.40818 * 23.53474 * 14 12 2 17 17 C 1.76198 * 107.21622 * 269.99314 * 14 12 2 18 18 C 1.34673 * 125.99195 * 149.99966 * 17 14 12 19 19 N 1.36877 * 106.81946 * 180.02562 * 18 17 14 20 20 C 1.46506 * 126.39525 * 179.97438 * 19 18 17 21 21 C 1.35035 * 107.20678 * 0.26506 * 19 18 17 22 22 N 1.30502 * 108.69990 * 359.56192 * 21 19 18 23 23 H 1.09003 * 109.46898 * 59.99889 * 1 2 3 24 24 H 1.08998 * 109.47291 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47338 * 300.00676 * 1 2 3 26 26 H 0.96997 * 119.99782 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.47617 * 270.00134 * 13 12 2 28 28 H 1.08999 * 109.47254 * 30.00874 * 13 12 2 29 29 H 1.09000 * 109.46944 * 150.00118 * 13 12 2 30 30 H 1.08001 * 126.58952 * 0.03958 * 18 17 14 31 31 H 1.08999 * 109.46892 * 90.00533 * 20 19 18 32 32 H 1.09000 * 109.46803 * 209.99707 * 20 19 18 33 33 H 1.09000 * 109.47214 * 330.00500 * 20 19 18 34 34 H 1.08000 * 125.65158 * 179.70892 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3213 -1.1201 4.0080 9 1 3.1454 -2.2875 3.6040 10 1 3.1465 -0.1871 4.8165 11 1 1.1660 -1.5864 4.8161 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4279 14 16 2.9705 0.1141 -2.2862 15 8 3.7119 -0.8790 -2.9813 16 8 3.5795 1.1829 -1.5749 17 6 1.8962 0.8533 -3.4711 18 6 2.1310 1.9922 -4.1504 19 7 1.0466 2.2021 -4.9587 20 6 0.8549 3.3228 -5.8826 21 6 0.1835 1.1866 -4.7409 22 7 0.7008 0.3808 -3.8543 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7095 1.1620 3.4843 27 1 2.4158 -2.7377 -0.9715 28 1 0.6905 -2.3002 -0.9846 29 1 1.6238 -2.2853 -2.5000 30 1 3.0069 2.6194 -4.0724 31 1 1.2607 3.0615 -6.8599 32 1 -0.2095 3.5380 -5.9769 33 1 1.3709 4.2027 -5.4984 34 1 -0.7749 1.0608 -5.2225 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095009.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:59 Heat of formation + Delta-G solvation = -28.996762 kcal Electronic energy + Delta-G solvation = -19775.430428 eV Core-core repulsion = 16643.081258 eV Total energy + Delta-G solvation = -3132.349171 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.12598 -38.22713 -37.84865 -36.87412 -35.09873 -34.48754 -30.98060 -30.82056 -28.04867 -27.25700 -26.94987 -23.47357 -22.64744 -22.15879 -19.79134 -18.94841 -18.49580 -18.05358 -17.18822 -16.83949 -16.69385 -16.28453 -15.37181 -15.15669 -15.05709 -14.72773 -14.51744 -13.92058 -13.67682 -13.50390 -13.34704 -13.17477 -13.12250 -12.94762 -12.75922 -12.60087 -12.53154 -12.17813 -12.11451 -11.85463 -11.20522 -11.09951 -10.80142 -10.47699 -10.02629 -9.59120 -8.08152 -6.21752 -0.42642 0.62260 1.44989 1.46862 1.58779 1.69505 1.78295 2.05545 2.47882 2.86439 3.19873 3.53084 3.78466 3.89515 3.96413 4.12039 4.28492 4.42953 4.70611 4.75981 4.88231 4.98247 5.05120 5.07522 5.18689 5.19238 5.20868 5.64223 5.78541 5.90841 6.09142 6.16143 6.33303 6.73265 6.86070 7.46820 8.96891 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.028973 B = 0.005902 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.181555 B = 4743.044997 C = 5004.225733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.274 3.726 3 H 0.025 0.975 4 C -0.535 4.535 5 H 0.059 0.941 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.960 3.040 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.275 1.275 12 N -0.980 5.980 13 C 0.111 3.889 14 S 2.727 3.273 15 O -0.992 6.992 16 O -0.990 6.990 17 C -0.581 4.581 18 C 0.059 3.941 19 N -0.451 5.451 20 C 0.058 3.942 21 C 0.190 3.810 22 N -0.459 5.459 23 H 0.025 0.975 24 H 0.042 0.958 25 H 0.067 0.933 26 H 0.264 0.736 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.212 0.788 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.729 4.781 -17.634 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.170 3.830 3 H 0.043 0.957 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.785 3.215 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.200 1.200 12 N -0.819 5.819 13 C -0.034 4.034 14 S 2.817 3.183 15 O -0.983 6.983 16 O -0.980 6.980 17 C -0.794 4.794 18 C -0.084 4.084 19 N -0.130 5.130 20 C -0.082 4.082 21 C -0.097 4.097 22 N -0.177 5.177 23 H 0.044 0.956 24 H 0.061 0.939 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.229 0.771 31 H 0.120 0.880 32 H 0.137 0.863 33 H 0.120 0.880 34 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -3.309 4.333 -17.332 18.169 hybrid contribution 0.026 0.631 0.409 0.753 sum -3.283 4.964 -16.923 17.939 Atomic orbital electron populations 1.21854 0.97186 1.00045 0.99857 1.18425 0.92113 0.91410 0.81021 0.95710 1.21684 1.31548 1.13001 0.91244 0.92277 1.25676 0.95185 0.95731 1.01721 1.70003 1.37497 1.23851 1.24279 0.85480 0.78236 0.78584 0.79161 1.19317 1.20821 1.20023 1.56998 1.70179 1.20717 1.34035 1.21271 1.01545 0.80042 1.00573 1.00556 0.73178 0.72414 0.72125 1.93482 1.69796 1.59671 1.75300 1.93527 1.75056 1.57402 1.72039 1.33120 1.11647 1.10547 1.24107 1.22952 0.94847 0.97367 0.93238 1.46015 1.14042 1.21813 1.31147 1.22635 1.06693 0.86377 0.92466 1.26160 0.99184 0.85653 0.98660 1.70218 1.05869 1.28883 1.12712 0.95605 0.93920 0.91417 0.92642 0.93534 0.90530 0.91003 0.77143 0.88045 0.86298 0.87952 0.72706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.40 8.95 71.98 0.64 -5.76 16 2 C 0.27 14.55 2.62 44.25 0.12 14.67 16 3 H 0.03 1.48 6.91 -2.39 -0.02 1.46 16 4 C -0.54 -30.31 8.37 25.60 0.21 -30.10 16 5 H 0.06 3.32 7.65 -2.91 -0.02 3.30 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.92 -53.10 11.32 21.45 0.24 -52.86 16 8 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 N -0.98 -45.32 3.06 -520.44 -1.59 -46.91 16 13 C 0.11 4.44 9.53 127.77 1.22 5.66 16 14 S 2.73 119.55 5.77 -56.49 -0.33 119.23 16 15 O -0.99 -45.35 17.09 -128.00 -2.19 -47.54 16 16 O -0.99 -48.75 16.52 -128.00 -2.11 -50.86 16 17 C -0.58 -21.08 7.08 83.52 0.59 -20.49 16 18 C 0.06 1.63 11.44 83.09 0.95 2.58 16 19 N -0.45 -8.84 3.15 -552.52 -1.74 -10.58 16 20 C 0.06 0.40 11.18 127.77 1.43 1.82 16 21 C 0.19 4.29 12.56 180.26 2.26 6.55 16 22 N -0.46 -15.46 11.25 -197.78 -2.23 -17.68 16 23 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.04 1.97 6.66 -2.39 -0.02 1.95 16 25 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 26 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 28 H 0.08 2.93 6.43 -2.39 -0.02 2.92 16 29 H 0.07 2.58 7.79 -2.39 -0.02 2.56 16 30 H 0.21 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.26 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -79.83 302.70 1.06 -78.77 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 1.10 Total: 5.69 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 7.88 Total: -23.70 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -5.32 Total: -128.03 kcal Atomic # 8 Polarization: -94.10 SS G_CDS: -4.30 Total: -98.40 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 119.55 SS G_CDS: -0.33 Total: 119.23 kcal Total: -79.83 1.06 -78.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095009.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.775 kcal (2) G-P(sol) polarization free energy of solvation -79.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds