Wall clock time and date at job start Mon Mar 30 2020 00:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47068 * 2 1 4 4 C 1.50701 * 109.46688 * 240.00548 * 2 1 3 5 5 H 1.08005 * 119.99816 * 275.01321 * 4 2 1 6 6 C 1.37873 * 120.00618 * 95.01659 * 4 2 1 7 7 N 1.31508 * 120.00618 * 184.89611 * 6 4 2 8 8 Si 1.86807 * 119.99480 * 4.89187 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.80368 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.79994 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.80306 * 8 6 4 12 12 N 1.46495 * 109.47193 * 120.00550 * 2 1 3 13 13 C 1.46502 * 120.00012 * 59.99841 * 12 2 1 14 14 S 1.65602 * 119.99774 * 239.99795 * 12 2 1 15 15 O 1.42099 * 106.40284 * 203.53742 * 14 12 2 16 16 O 1.42100 * 106.40102 * 336.46145 * 14 12 2 17 17 C 1.76205 * 107.21570 * 90.00166 * 14 12 2 18 18 C 1.34662 * 125.99402 * 90.00037 * 17 14 12 19 19 N 1.36875 * 106.82115 * 179.97438 * 18 17 14 20 20 C 1.46506 * 126.39738 * 179.97438 * 19 18 17 21 21 C 1.35046 * 107.20516 * 0.02562 * 19 18 17 22 22 N 1.30501 * 108.69801 * 359.76446 * 21 19 18 23 23 H 1.09001 * 109.47057 * 54.84000 * 1 2 3 24 24 H 1.08999 * 109.46784 * 294.83905 * 1 2 3 25 25 H 1.08994 * 109.47023 * 174.83560 * 1 2 3 26 26 H 0.96999 * 120.00117 * 180.02562 * 7 6 4 27 27 H 1.08996 * 109.47248 * 90.00098 * 13 12 2 28 28 H 1.09008 * 109.46740 * 210.00147 * 13 12 2 29 29 H 1.08995 * 109.47148 * 329.99869 * 13 12 2 30 30 H 1.08005 * 126.58924 * 359.94155 * 18 17 14 31 31 H 1.08995 * 109.46632 * 90.00321 * 20 19 18 32 32 H 1.09007 * 109.46639 * 210.00171 * 20 19 18 33 33 H 1.08994 * 109.47045 * 330.00026 * 20 19 18 34 34 H 1.08000 * 125.64851 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1352 -1.7855 -1.2293 6 6 2.3605 0.0122 -2.3580 7 7 2.7065 -0.6129 -3.4621 8 14 2.3137 1.8792 -2.3173 9 1 3.5988 2.3950 -1.7809 10 1 2.1071 2.3993 -3.6928 11 1 1.1980 2.3275 -1.4457 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4278 14 16 2.9705 0.1140 2.2861 15 8 3.7119 -0.8791 2.9813 16 8 3.5795 1.1829 1.5747 17 6 1.8961 0.8533 3.4711 18 6 1.4714 0.2865 4.6164 19 7 0.6597 1.1999 5.2331 20 6 -0.0334 1.0234 6.5117 21 6 0.6162 2.2938 4.4423 22 7 1.3618 2.0810 3.3926 23 1 -0.3633 0.5918 -0.8402 24 1 -0.3633 0.4317 0.9326 25 1 -0.3633 -1.0234 -0.0925 26 1 2.9377 -0.1045 -4.2552 27 1 2.4157 -2.7378 0.9714 28 1 1.6239 -2.2854 2.5000 29 1 0.6905 -2.3003 0.9845 30 1 1.7224 -0.6996 4.9784 31 1 0.6076 1.3683 7.3230 32 1 -0.9570 1.6023 6.5072 33 1 -0.2665 -0.0315 6.6560 34 1 0.0596 3.1965 4.6467 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095011.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:03 Heat of formation + Delta-G solvation = -1.253110 kcal Electronic energy + Delta-G solvation = -19905.334145 eV Core-core repulsion = 16774.188029 eV Total energy + Delta-G solvation = -3131.146116 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 273.093 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.17210 -36.56326 -36.20381 -35.09955 -34.27477 -32.37321 -29.91606 -29.81750 -27.41564 -25.66919 -25.02648 -22.29698 -21.47863 -20.44867 -18.44697 -17.59271 -17.26366 -16.40039 -15.92612 -15.61094 -15.33890 -14.54810 -14.25194 -14.00068 -13.51337 -13.34165 -13.15119 -13.08465 -12.51031 -12.39118 -11.84193 -11.73024 -11.41240 -11.23964 -11.08682 -11.03500 -10.76509 -10.51452 -10.21531 -10.05665 -9.94781 -9.67574 -9.22737 -8.98336 -8.49595 -7.96597 -6.07955 -4.07740 1.04554 1.62915 2.49945 2.70668 3.42315 3.49534 3.60501 3.83243 4.27460 4.42949 4.49899 4.54270 4.58445 4.67738 4.93209 4.96111 5.26084 5.49517 5.61582 5.86949 6.10115 6.18767 6.30789 6.45224 6.49045 6.63949 6.69990 6.88746 7.04812 7.30406 7.58259 7.74330 7.78706 8.52646 8.96707 9.54473 11.03623 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.026199 B = 0.006826 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.468835 B = 4101.014270 C = 4332.896961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.234 3.766 3 H 0.063 0.937 4 C -0.513 4.513 5 H 0.082 0.918 6 C 0.079 3.921 7 N -0.889 5.889 8 Si 0.864 3.136 9 H -0.262 1.262 10 H -0.288 1.288 11 H -0.261 1.261 12 N -0.972 5.972 13 C 0.107 3.893 14 S 2.702 3.298 15 O -0.973 6.973 16 O -0.943 6.943 17 C -0.549 4.549 18 C 0.056 3.944 19 N -0.462 5.462 20 C 0.069 3.931 21 C 0.176 3.824 22 N -0.410 5.410 23 H 0.054 0.946 24 H 0.025 0.975 25 H 0.051 0.949 26 H 0.266 0.734 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.191 0.809 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.259 1.823 19.804 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.131 3.869 3 H 0.080 0.920 4 C -0.553 4.553 5 H 0.100 0.900 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.690 3.310 9 H -0.187 1.187 10 H -0.214 1.214 11 H -0.185 1.185 12 N -0.812 5.812 13 C -0.039 4.039 14 S 2.788 3.212 15 O -0.963 6.963 16 O -0.933 6.933 17 C -0.758 4.758 18 C -0.084 4.084 19 N -0.144 5.144 20 C -0.074 4.074 21 C -0.110 4.110 22 N -0.126 5.126 23 H 0.073 0.927 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.208 0.792 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -7.266 2.485 19.162 20.644 hybrid contribution -0.957 0.615 1.073 1.564 sum -8.223 3.100 20.235 22.061 Atomic orbital electron populations 1.22212 0.98454 1.00888 0.98966 1.19171 0.91156 0.93676 0.82923 0.91958 1.21147 1.44019 0.95954 0.94196 0.89992 1.24975 0.93741 0.98511 0.95265 1.69886 1.44948 1.36099 1.01738 0.87045 0.80708 0.86255 0.77017 1.18693 1.21381 1.18539 1.57732 1.70562 1.19332 1.33601 1.21203 1.01827 0.81982 0.98899 1.02037 0.73642 0.73142 0.72354 1.93513 1.67951 1.59119 1.75682 1.93552 1.73029 1.55902 1.70789 1.34133 1.23669 1.02507 1.15489 1.22693 0.95034 0.96626 0.94036 1.45763 1.35884 1.14074 1.18642 1.22152 0.97832 1.04607 0.82800 1.25389 1.03309 0.93134 0.89122 1.70371 1.08274 1.13394 1.20580 0.92685 0.95606 0.92969 0.92382 0.92436 0.93235 0.91120 0.79200 0.90114 0.89022 0.89223 0.77134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.04 37.16 0.34 -2.74 16 2 C 0.23 5.70 2.28 -69.08 -0.16 5.54 16 3 H 0.06 1.64 4.06 -51.93 -0.21 1.43 16 4 C -0.51 -14.36 8.82 -34.44 -0.30 -14.66 16 5 H 0.08 2.41 7.67 -52.48 -0.40 2.01 16 6 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 7 N -0.89 -27.12 13.96 55.43 0.77 -26.34 16 8 Si 0.86 22.61 26.99 -169.99 -4.59 18.02 16 9 H -0.26 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.26 -6.50 6.82 56.52 0.39 -6.12 16 12 N -0.97 -20.77 3.06 -115.85 -0.35 -21.12 16 13 C 0.11 1.88 9.39 59.85 0.56 2.44 16 14 S 2.70 57.20 5.80 -107.50 -0.62 56.58 16 15 O -0.97 -20.38 16.91 -57.17 -0.97 -21.35 16 16 O -0.94 -23.93 16.58 -57.17 -0.95 -24.88 16 17 C -0.55 -9.75 7.13 -17.81 -0.13 -9.87 16 18 C 0.06 0.75 11.31 -16.57 -0.19 0.56 16 19 N -0.46 -4.88 3.15 -125.99 -0.40 -5.28 16 20 C 0.07 0.33 11.18 59.85 0.67 0.99 16 21 C 0.18 2.21 12.56 -90.37 -1.14 1.07 16 22 N -0.41 -7.38 11.25 -13.86 -0.16 -7.53 16 23 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 1.02 6.88 -51.93 -0.36 0.67 16 26 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.69 7.79 -51.92 -0.40 0.29 16 29 H 0.07 1.16 6.53 -51.93 -0.34 0.82 16 30 H 0.19 1.92 8.06 -52.48 -0.42 1.50 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.21 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 302.15 15.07 4.55 4.55 Total: -1.00 -37.79 302.15 -7.40 -45.19 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -4.25 Total: -3.40 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -0.44 Total: -14.44 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -0.13 Total: -60.28 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -1.92 Total: -46.22 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.59 Total: 18.02 kcal Atomic # 16 Polarization: 57.20 SS G_CDS: -0.62 Total: 56.58 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -37.79 -7.40 -45.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095011.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.937 kcal (2) G-P(sol) polarization free energy of solvation -37.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds